Jean-Yves Roignant

Publications | Mémoires et thèses

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48 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2014 | 2010 | 2009 | 2008 | 2006 | 2003 | 1999 |
2024
 
Enhanced detection of RNA modifications and read mapping with high-accuracy nanopore RNA basecalling models.
Diensthuber G., Pryszcz L.P., Llovera L., Lucas M.C., Delgado-Tejedor A., Cruciani S., Roignant J.Y., Begik O., Novoa E.M., 2024/11/20. Genome research, 34 (11) pp. 1865-1877. Peer-reviewed.
[DOI][Pmid][serval:BIB_5FBE407DE554]
Exploring pseudouridylation: dysregulation in disease and therapeutic potential.
Guillen-Angel M., Roignant J.Y., 2024/08. Current opinion in genetics & development, 87 p. 102210. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5728369E0696]
 
DDX21: The link between m6A and R-loops.
Lavergne G., Roignant J.Y., 2024/05/02. Molecular cell, 84 (9) pp. 1631-1632. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_424674BF9C11]
Comprehensive map of ribosomal 2'-O-methylation and C/D box snoRNAs in Drosophila melanogaster.
Sklias A., Cruciani S., Marchand V., Spagnuolo M., Lavergne G., Bourguignon V., Brambilla A., Dreos R., Marygold S.J., Novoa E.M. et al., 2024/04/12. Nucleic acids research, 52 (6) pp. 2848-2864. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6F7BAC3B84B8]
2023
 
Experience with German Research Consortia in the Field of Chemical Biology of Native Nucleic Acid Modifications.
Helm M., Bohnsack M.T., Carell T., Dalpke A., Entian K.D., Ehrenhofer-Murray A., Ficner R., Hammann C., Höbartner C., Jäschke A. et al., 2023/12/15. ACS chemical biology, 18 (12) pp. 2441-2449. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6189C64F12A4]
Exploring the brain epitranscriptome: perspectives from the NSAS summit.
Lee S.M., Koo B., Carré C., Fischer A., He C., Kumar A., Liu K., Meyer K.D., Ming G.L., Peng J. et al., 2023/10. Frontiers in neuroscience, 17 p. 1291446. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_416B229518A8]
Biallelic variants in NSUN6 cause an autosomal recessive neurodevelopmental disorder.
Mattioli F., Worpenberg L., Li C.T., Ibrahim N., Naz S., Sharif S., Firouzabadi S.G., Vosoogh S., Saraeva-Lamri R., Raymond L. et al., 2023/09. Genetics in medicine, 25 (9) p. 100900. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D38F5D2EC77B]
The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance.
Brazane M., Dimitrova D.G., Pigeon J., Paolantoni C., Ye T., Marchand V., Da Silva B., Schaefer E., Angelova M.T., Stark Z. et al., 2023/04. Life science alliance, 6 (4) pp. e202201877. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_39AAE65032F8]
2022
 
Poly(m6A) tails stabilize transcripts.
Lavergne G., Roignant J.Y., 2022/06/02. Molecular cell, 82 (11) pp. 1979-1980. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F4D6B97820E7]
Functional interplay within the epitranscriptome: Reality or fiction?
Worpenberg L., Paolantoni C., Roignant J.Y., 2022/02. BioEssays, 44 (2) pp. e2100174. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0E71F94EA691]
Parallel evolution of a splicing program controlling neuronal excitability in flies and mammals.
Torres-Méndez A., Pop S., Bonnal S., Almudi I., Avola A., Roberts RJV, Paolantoni C., Alcaina-Caro A., Martín-Anduaga A., Haussmann I.U. et al., 2022/01/28. Science advances, 8 (4) pp. eabk0445. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2FFE761501C4]
 
An exon junction complex-independent function of Barentsz in neuromuscular synapse growth.
Ho C.H., Paolantoni C., Bawankar P., Tang Z., Brown S., Roignant J.Y., Treisman J.E., 2022/01/05. EMBO reports, 23 (1) pp. e53231. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CBC52F96717F]
2021
 
m6A RNA methylation regulates promoter- proximal pausing of RNA polymerase II.
Akhtar J., Renaud Y., Albrecht S., Ghavi-Helm Y., Roignant J.Y., Silies M., Junion G., 2021/08/19. Molecular cell, 81 (16) pp. 3356-3367.e6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A4D00990CF8F]
Hakai is required for stabilization of core components of the m6A mRNA methylation machinery.
Bawankar P., Lence T., Paolantoni C., Haussmann I.U., Kazlauskiene M., Jacob D., Heidelberger J.B., Richter F.M., Nallasivan M.P., Morin V. et al., 2021/06/18. Nature communications, 12 (1) p. 3778. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0C803938C71]
 
Anything but Ordinary - Emerging Splicing Mechanisms in Eukaryotic Gene Regulation.
Gehring N.H., Roignant J.Y., 2021/04. Trends in genetics, 37 (4) pp. 355-372. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E154CCF2414B]
NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination.
Werner S., Galliot A., Pichot F., Kemmer T., Marchand V., Sednev M.V., Lence T., Roignant J.Y., König J., Höbartner C. et al., 2021/02/26. Nucleic acids research, 49 (4) pp. e23. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3CBA60432C31]
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila.
Worpenberg L., Paolantoni C., Longhi S., Mulorz M.M., Lence T., Wessels H.H., Dassi E., Aiello G., Sutandy FXR, Scheibe M. et al., 2021/02/15. The EMBO journal, 40 (4) pp. e104975. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F8F35D8782DA]
2020
NineTeen Complex-subunit Salsa is required for efficient splicing of a subset of introns and dorsal-ventral patterning.
Rathore O.S., Silva R.D., Ascensão-Ferreira M., Matos R., Carvalho C., Marques B., Tiago M.N., Prudêncio P., Andrade R.P., Roignant J.Y. et al., 2020/12. RNA, 26 (12) pp. 1935-1956. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A51FB6FD539B]
 
The 18S ribosomal RNA m6A methyltransferase Mettl5 is required for normal walking behavior in Drosophila.
Leismann J., Spagnuolo M., Pradhan M., Wacheul L., Vu M.A., Musheev M., Mier P., Andrade-Navarro M.A., Graille M., Niehrs C. et al., 2020/04/29. EMBO reports pp. e49443. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1615D8B34DDC]
tRNA 2'-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila.
Angelova M.T., Dimitrova D.G., Da Silva B., Marchand V., Jacquier C., Achour C., Brazane M., Goyenvalle C., Bourguignon-Igel V., Shehzada S. et al., 2020/02/28. Nucleic acids research, 48 (4) pp. 2050-2072. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_54F1E8540412]
Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation.
Dold A., Han H., Liu N., Hildebrandt A., Brüggemann M., Rücklé C., Hänel H., Busch A., Beli P., Zarnack K. et al., 2020/01. PLoS genetics, 16 (1) pp. e1008581. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BF729C36E100]
2019
The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation.
Hildebrandt A., Brüggemann M., Rücklé C., Boerner S., Heidelberger J.B., Busch A., Hänel H., Voigt A., Möckel M.M., Ebersberger S. et al., 2019/10/22. Genome biology, 20 (1) p. 216. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_35684127C4F1]
 
Absolute Quantification of Noncoding RNA by Microscale Thermophoresis.
Jacob D., Thüring K., Galliot A., Marchand V., Galvanin A., Ciftci A., Scharmann K., Stock M., Roignant J.Y., Leidel S.A. et al., 2019/07/08. Angewandte Chemie, 58 (28) pp. 9565-9569. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FBBD909C9238]
 
Mechanistic insights into m6A RNA enzymes.
Lence T., Paolantoni C., Worpenberg L., Roignant J.Y., 2019/03. Biochimica et biophysica acta. Gene regulatory mechanisms, 1862 (3) pp. 222-229. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_08184FD62D7B]
 
Tyramine action on motoneuron excitability and adaptable tyramine/octopamine ratios adjust Drosophila locomotion to nutritional state.
Schützler N., Girwert C., Hügli I., Mohana G., Roignant J.Y., Ryglewski S., Duch C., 2019/02/26. Proceedings of the National Academy of Sciences of the United States of America, 116 (9) pp. 3805-3810. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9445E73CE560]
 
Promoter-proximal pausing mediated by the exon junction complex regulates splicing.
Akhtar J., Kreim N., Marini F., Mohana G., Brüne D., Binder H., Roignant J.Y., 2019/01/31. Nature communications, 10 (1) p. 521. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5AD427061B62]
 
Identification of Methylated Transcripts Using the TRIBE Approach
Worpenberg Lina, Jakobi Tobias, Dieterich Christoph, Roignant Jean-Yves, 2019. pp. 89-106 dans Epitranscriptomics chap. 7, Springer New York.
[DOI][WoS][Pmid][serval:BIB_B94DC9370F47]
2018
 
Variants in PUS7 Cause Intellectual Disability with Speech Delay, Microcephaly, Short Stature, and Aggressive Behavior.
de Brouwer APM, Abou Jamra R., Körtel N., Soyris C., Polla D.L., Safra M., Zisso A., Powell C.A., Rebelo-Guiomar P., Dinges N. et al., 2018/12/06. American journal of human genetics, 103 (6) pp. 1045-1052. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_27BE43BD14F2]
 
Quantifying post-transcriptional regulation in the development of Drosophila melanogaster.
Becker K., Bluhm A., Casas-Vila N., Dinges N., Dejung M., Sayols S., Kreutz C., Roignant J.Y., Butter F., Legewie S., 2018/11/26. Nature communications, 9 (1) p. 4970. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BC2B7A35FEE3]
 
Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d.
Knuckles P., Lence T., Haussmann I.U., Jacob D., Kreim N., Carl S.H., Masiello I., Hares T., Villaseñor R., Hess D. et al., 2018/03/01. Genes & development, 32 (5-6) pp. 415-429. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D5A1EF799866]
 
Positioning Europe for the EPITRANSCRIPTOMICS challenge.
Jantsch M.F., Quattrone A., O'Connell M., Helm M., Frye M., Macias-Gonzales M., Ohman M., Ameres S., Willems L., Fuks F. et al., 2018. RNA biology, 15 (6) pp. 829-831. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_69FDFD07375D]
 
The Emerging Field of Epitranscriptomics in Neurodevelopmental and Neuronal Disorders.
Angelova M.T., Dimitrova D.G., Dinges N., Lence T., Worpenberg L., Carré C., Roignant J.Y., 2018. Frontiers in bioengineering and biotechnology, 6 p. 46. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0050CE3CCC79]
2017
 
Comprehensive Characterization of the Complex lola Locus Reveals a Novel Role in the Octopaminergic Pathway via Tyramine Beta-Hydroxylase Regulation.
Dinges N., Morin V., Kreim N., Southall T.D., Roignant J.Y., 2017/12/05. Cell reports, 21 (10) pp. 2911-2925. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C45AE4C60405]
 
A fly view on the roles and mechanisms of the m6A mRNA modification and its players.
Lence T., Soller M., Roignant J.Y., 2017/09/02. RNA biology, 14 (9) pp. 1232-1240. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_931A0BE4FA8B]
 
The developmental proteome of Drosophila melanogaster.
Casas-Vila N., Bluhm A., Sayols S., Dinges N., Dejung M., Altenhein T., Kappei D., Altenhein B., Roignant J.Y., Butter F., 2017/07. Genome research, 27 (7) pp. 1273-1285. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AE7A43DD17FE]
 
m6A in mRNA: An Ancient Mechanism for Fine-Tuning Gene Expression.
Roignant J.Y., Soller M., 2017/06. Trends in genetics, 33 (6) pp. 380-390. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_13D2485FC275]
2016
 
m6A modulates neuronal functions and sex determination in Drosophila.
Lence T., Akhtar J., Bayer M., Schmid K., Spindler L., Ho C.H., Kreim N., Andrade-Navarro M.A., Poeck B., Helm M. et al., 2016/12/08. Nature, 540 (7632) pp. 242-247. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_175BF2D91E8C]
 
Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe.
Żurek-Biesiada D., Szczurek A.T., Prakash K., Best G., Mohana G.K., Lee H.K., Roignant J.Y., Dobrucki J.W., Cremer C., Birk U., 2016/06. Data in brief, 7 pp. 157-171. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C3D2BB1EB767]
 
Localization microscopy of DNA in situ using Vybrant(®) DyeCycle™ Violet fluorescent probe: A new approach to study nuclear nanostructure at single molecule resolution.
Żurek-Biesiada D., Szczurek A.T., Prakash K., Mohana G.K., Lee H.K., Roignant J.Y., Birk U.J., Dobrucki J.W., Cremer C., 2016/05/01. Experimental cell research, 343 (2) pp. 97-106. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C78C62B525B3]
2014
 
The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript.
Malone C.D., Mestdagh C., Akhtar J., Kreim N., Deinhard P., Sachidanandam R., Treisman J., Roignant J.Y., 2014/08/15. Genes & development, 28 (16) pp. 1786-1799. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_597DB80469A3]
2010
 
Exon junction complex subunits are required to splice Drosophila MAP kinase, a large heterochromatic gene.
Roignant J.Y., Treisman J.E., 2010/10/15. Cell, 143 (2) pp. 238-250. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_54231003ECAE]
 
The transcriptional co-factor Chip acts with LIM-homeodomain proteins to set the boundary of the eye field in Drosophila.
Roignant J.Y., Legent K., Janody F., Treisman J.E., 2010/01. Development, 137 (2) pp. 273-281. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2C08A82FBFB0]
2009
 
Pattern formation in the Drosophila eye disc.
Roignant J.Y., Treisman J.E., 2009. The International journal of developmental biology, 53 (5-6) pp. 795-804. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_40D05C9D20EB]
2008
 
Myopic acts in the endocytic pathway to enhance signaling by the Drosophila EGF receptor.
Miura G.I., Roignant J.Y., Wassef M., Treisman J.E., 2008/06. Development, 135 (11) pp. 1913-1922. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_92BAE18DBF6B]
2006
 
The novel SAM domain protein Aveugle is required for Raf activation in the Drosophila EGF receptor signaling pathway.
Roignant J.Y., Hamel S., Janody F., Treisman J.E., 2006/04/01. Genes & development, 20 (7) pp. 795-806. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DD509F2F22BA]
2003
 
Absence of transitive and systemic pathways allows cell-specific and isoform-specific RNAi in Drosophila.
Roignant J.Y., Carré C., Mugat B., Szymczak D., Lepesant J.A., Antoniewski C., 2003/03. RNA, 9 (3) pp. 299-308. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DF5A64864AE5]
 
batman Interacts with polycomb and trithorax group genes and encodes a BTB/POZ protein that is included in a complex containing GAGA factor.
Faucheux M., Roignant J.Y., Netter S., Charollais J., Antoniewski C., Théodore L., 2003/02. Molecular and cellular biology, 23 (4) pp. 1181-1195. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_34D9ACC47F33]
1999
 
Dual requirement for the EcR/USP nuclear receptor and the dGATAb factor in an ecdysone response in Drosophila melanogaster.
Brodu V., Mugat B., Roignant J.Y., Lepesant J.A., Antoniewski C., 1999/08. Molecular and cellular biology, 19 (8) pp. 5732-5742. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CC41F8F136BE]
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