Julien Dorier

Publications | Mémoires et thèses

La recherche avancée est accessible via Serval

Les publications peuvent être gérées en accédant à Serval via MyUnil


27 publications

Sous presse | 2024 | 2023 | 2022 | 2021 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2011 | 2009 | 2008 |
Sous presse
 
Systematic screening of enhancer-blocking insulators in Drosophila identifies their DNA sequence determinants.
Tonelli A., Cousin P., Jankowski A., Wang B., Dorier J., Barraud J., Zunjarrao S., Gambetta M.C. Developmental cell. Peer-reviewed.
[DOI][Pmid][serval:BIB_2A951E5FC6A3]
2024
Comparative assessment of cytometry by time-of-flight and full spectral flow cytometry based on a 33-color antibody panel.
Schäfer A., D'Almeida S.M., Dorier J., Guex N., Villard J., Garcia M., 2024/04. Journal of immunological methods, 527 p. 113641. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_2897FE5D053E]
2023
Chromosome-level organization of the regulatory genome in the Drosophila nervous system
Mohana Giriram, Dorier Julien, Li Xiao, Mouginot Marion, Smith Rebecca C., Malek Héléna, Leleu Marion, Rodriguez Daniel, Khadka Jenisha, Rosa Patrycja et al., 2023/08. Cell, 186 (18) pp. 3826-3844.e26. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_04C850D22DE3]
2022
Essential role of Cp190 in physical and regulatory boundary formation.
Kaushal A., Dorier J., Wang B., Mohana G., Taschner M., Cousin P., Waridel P., Iseli C., Semenova A., Restrepo S. et al., 2022/05/13. Science advances, 8 (19) pp. eabl8834. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EEEA9AFE8EED]
2021
 
A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root.
Graeff M., Rana S., Wendrich J.R., Dorier J., Eekhout T., Aliaga Fandino A.C., Guex N., Bassel G.W., De Rybel B., Hardtke C.S., 2021/12/06. Molecular plant, 14 (12) pp. 1985-1999. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6A28C040E088]
Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING.
Bruand M., Barras D., Mina M., Ghisoni E., Morotti M., Lanitis E., Fahr N., Desbuisson M., Grimm A., Zhang H. et al., 2021/07/20. Cell reports, 36 (3) p. 109412. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_745449157CA6]
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.
Kaushal A., Mohana G., Dorier J., Özdemir I., Omer A., Cousin P., Semenova A., Taschner M., Dergai O., Marzetta F. et al., 2021/02/12. Nature communications, 12 (1) p. 1011. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6E8BCA9FDAE9]
2019
Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.
Schvartzman J.B., Hernández P., Krimer D.B., Dorier J., Stasiak A., 2019/08/22. Nucleic acids research, 47 (14) pp. 7182-7198. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_55CCC896580F]
Are TADs supercoiled?
Racko D., Benedetti F., Dorier J., Stasiak A., 2019/01/25. Nucleic acids research, 47 (2) pp. 521-532. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_12BCCBEC8B1A]
KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P., Rubach P., Goundaroulis D., Dorier J., Sulkowski P., Millett K.C., Rawdon E.J., Stasiak A., Sulkowska J.I., 2019/01/08. Nucleic acids research, 47 (D1) pp. D367-D375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CACEFF8F3AA5]
2018
 
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids.
Dorier J., Goundaroulis D., Benedetti F., Stasiak A., 2018/10/01. Bioinformatics, 34 (19) pp. 3402-3404. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6AEE0F404F13]
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes.
Racko D., Benedetti F., Dorier J., Stasiak A., 2018/02/28. Nucleic acids research, 46 (4) pp. 1648-1660. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DFCB79821A40]
2017
Studies of global and local entanglements of individual protein chains using the concept of knotoids.
Goundaroulis D., Dorier J., Benedetti F., Stasiak A., 2017/07/24. Scientific reports, 7 (1) p. 6309. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D27975D9E8ED]
 
Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase.
Racko D., Benedetti F., Dorier J., Burnier Y., Stasiak A., 2017. pp. 339-372 dans Methods in Molecular Biology chap. 24, Springer.
[DOI][WoS][Pmid][serval:BIB_E48F1B04C7E2]
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids
Goundaroulis D., Gügümcü N., Lambropoulou S., Dorier J., Stasiak A., Kauffman L., 2017. Polymers, 9 (9) p. 444. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_72C4DA5C17D4]
Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe.
Benedetti F., Racko D., Dorier J., Burnier Y., Stasiak A., 2017. Nucleic Acids Research, 45 (17) pp. 9850-9859. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0678888C73AE]
2016
How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation.
Rawdon E.J., Dorier J., Racko D., Millett K.C., Stasiak A., 2016/06/02. Nucleic acids research, 44 (10) pp. 4528-4538. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_0E0CBB4E996B]
2015
Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.
Benedetti F., Japaridze A., Dorier J., Racko D., Kwapich R., Burnier Y., Dietler G., Stasiak A., 2015. Nucleic Acids Research, 43 (4) pp. 2390-2399.
[URN][DOI][WoS][Pmid][serval:BIB_202F278D6524]
Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation.
Racko D., Benedetti F., Dorier J., Burnier Y., Stasiak A., 2015. Nucleic Acids Research, 43 (15) pp. 7229-7236.
[URN][DOI][WoS][Pmid][serval:BIB_A7486614D0B2]
2014
Effects of supercoiling on enhancer-promoter contacts.
Benedetti F., Dorier J., Stasiak A., 2014. Nucleic Acids Research, 42 (16) pp. 10425-10432.
[URN][DOI][WoS][Pmid][serval:BIB_60CC627662F8]
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes.
Benedetti F., Dorier J., Burnier Y., Stasiak A., 2014. Nucleic Acids Research, 42 (5) pp. 2848-2855.
[URN][DOI][WoS][Pmid][serval:BIB_A6B3945F65A0]
2013
Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes.
Dorier J., Stasiak A., 2013. Nucleic Acids Research, 41 (14) pp. 6808-6815.
[URN][DOI][WoS][Pmid][serval:BIB_F265DFDD4281]
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
Chaouiya C., Bérenguier D., Keating S.M., Naldi A., van Iersel M.P., Rodriguez N., Dräger A., Büchel F., Cokelaer T., Kowal B. et al., 2013. BMC Systems Biology, 7 p. 135.
[URN][DOI][WoS][Pmid][serval:BIB_9B75E0356BD8]
2011
 
Role of topological exclusion in formation and organization of chromosomal territories
Dorier Julien, Stasiak Andrzej, 2011. Progress of Theoretical Physics Supplement, 191 pp. 46-54. Peer-reviewed.
[WoS][serval:BIB_2E510889DD8C]
2009
 
Inhibitory effect of DNA supercoiling on DNA knotting
Dorier J., Burnier Y., Stasiak A., 2009. Bussei Kenkyu, 92 (1) pp. 84-88. Peer-reviewed.
[serval:BIB_B3C1D95595C0]
Topological origins of chromosomal territories.
Dorier J., Stasiak A., 2009. Nucleic Acids Research, 37 (19) pp. 6316-6322. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E01F9D39E9FE]
2008
DNA supercoiling inhibits DNA knotting.
Burnier Y., Dorier J., Stasiak A., 2008/09. Nucleic Acids Research, 36 (15) pp. 4956-4963. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_681FC248BD52]
Partagez:
Unicentre - CH-1015 Lausanne
Suisse
Tél. +41 21 692 11 11
Canton de Vaud
Swiss University