Claire Bertelli Lombardo

Publications | Mémoires et thèses

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81 publications

Sous presse | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 |
Sous presse
 
MeSS and assembly_finder: A toolkit for in silico metagenomic sample generation.
Chaabane F., Pillonel T., Bertelli C. Bioinformatics. Peer-reviewed.
[DOI][Pmid][serval:BIB_0CCA1B3DBA2D]
2024
Association of pathogenic determinants of Fusobacterium necrophorum with bacteremia, and Lemierre's syndrome.
Carrara A., Bertelli C., Gardiol C., Marquis B., Andrey D.O., Schrenzel J., Pillonel T., Greub G., 2024/08/27. Scientific reports, 14 (1) p. 19804. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A29B2514B933]
 
zDB: bacterial comparative genomics made easy.
Marquis B., Pillonel T., Carrara A., Bertelli C., 2024/07/23. mSystems, 9 (7) pp. e0047324. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_98D21FF7E6AB]
Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
Mauffrey F., Bertelli C., Greub G., Senn L., Blanc D.S., 2024/07/16. Journal of clinical microbiology, 62 (7) pp. e0020324. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_729009233F3E]
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.
Wegner F., Cabrera-Gil B., Tanguy A., Beckmann C., Beerenwinkel N., Bertelli C., Carrara M., Cerutti L., Chen C., Cordey S. et al., 2024/05/02. Microbiology spectrum, 12 (5) pp. e0362823. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6B5035C9655]
Conference report: the first bacterial genome sequencing pan-European network conference.
Germuskova Z., Sosa E., Lagos A.C., Aamot H.V., Beale M.A., Bertelli C., Björkmann J., Couto N., Feige L., Greub G. et al., 2024. Microbes and infection, 26 (8) p. 105410. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_01041FBBDEC4]
2023
 
In vivo reprogramming leads to premature death linked to hepatic and intestinal failure.
Parras A., Vílchez-Acosta A., Desdín-Micó G., Picó S., Mrabti C., Montenegro-Borbolla E., Maroun C.Y., Haghani A., Brooke R., Del Carmen Maza M. et al., 2023/12. Nature aging, 3 (12) pp. 1509-1520. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CD54C85E7DB7]
 
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort.
Galperine T., Choi Y., Pagani J.L., Kritikos A., Papadimitriou-Olivgeris M., Méan M., Scherz V., Opota O., Greub G., Guery B. et al., 2023/08/18. BMC infectious diseases, 23 (1) p. 537. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C4AC9A4A0DF4]
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.
Neves A., Walther D., Martin-Campos T., Barbie V., Bertelli C., Blanc D., Bouchet G., Erard F., Greub G., Hirsch H.H. et al., 2023/05. Microbial genomics, 9 (5). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7F921402DD4E]
 
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data.
Nadeau S.A., Vaughan T.G., Beckmann C., Topolsky I., Chen C., Hodcroft E., Schär T., Nissen I., Santacroce N., Burcklen E. et al., 2023/01/25. Science translational medicine, 15 (680) pp. eabn7979. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CD53A1467C94]
 
Understanding the parameters guiding the best practice for treating B-cell-depleted patients with COVID-19 convalescent plasma therapy.
Gachoud D., Bertelli C., Rufer N., 2023/01. British journal of haematology, 200 (2) pp. e25-e27. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4E3F68CC193D]
2022
Alpha and Omicron SARS-CoV-2 Adaptation in an Upper Respiratory Tract Model.
Mathez G., Pillonel T., Bertelli C., Cagno V., 2022/12/20. Viruses, 15 (1) p. 13. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6CFE384F7B79]
Geneticin shows selective antiviral activity against SARS-CoV-2 by interfering with programmed -1 ribosomal frameshifting.
Varricchio C., Mathez G., Pillonel T., Bertelli C., Kaiser L., Tapparel C., Brancale A., Cagno V., 2022/12. Antiviral research, 208 p. 105452. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BF55BB6045C7]
 
Antibody response and intra-host viral evolution after plasma therapy in COVID-19 patients pre-exposed or not to B-cell-depleting agents.
Gachoud D., Pillonel T., Tsilimidos G., Battolla D., Dumas D., Opota O., Fontana S., Vollenweider P., Manuel O., Greub G. et al., 2022/11. British journal of haematology, 199 (4) pp. 549-559. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_801AF06A907A]
 
Prevalence and Factors Associated with Prosthetic Joint Infections in Patients with Staphylococcus aureus Bacteraemia: A 7-Year Retrospective Study.
Papadimitriou-Olivgeris M., Senn L., Bertelli C., Grandbastien B., Steinmetz S., Boillat-Blanco N., 2022/09/28. Antibiotics, 11 (10) p. 1323. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B6E9D65B4BFE]
Building up a clinical microbiota profiling: a quality framework proposal.
Scherz V., Greub G., Bertelli C., 2022/05. Critical reviews in microbiology, 48 (3) pp. 356-375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4C5A1B1E944C]
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks.
Bertelli C., Gray K.L., Woods N., Lim A.C., Tilley K.E., Winsor G.L., Hoad G.R., Roudgar A., Spencer A., Peltier J. et al., 2022/05. Microbial genomics, 8 (5) pp. :000818. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7CD1A760542C]
Unexpected associations between respiratory viruses and bacteria with Pulmonary Function Testing in children suffering from Cystic Fibrosis (MUCOVIB study).
Scherz V., Caruana G., Taffé P., Brouillet R., Bertelli C., Jaton K., Fougère Y., Posfay-Barbe K.M., Mornand A., Rochat-Guignard I. et al., 2022/03. Journal of cystic fibrosis, 21 (2) pp. e158-e164. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DE1F69949AB8]
 
External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories.
Wegner F., Roloff T., Huber M., Cordey S., Ramette A., Gerth Y., Bertelli C., Stange M., Seth-Smith HMB, Mari A. et al., 2022/01/19. Journal of clinical microbiology, 60 (1) pp. e0169821. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2E7163A8114F]
Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses.
Choi Y., Ladoy A., De Ridder D., Jacot D., Vuilleumier S., Bertelli C., Guessous I., Pillonel T., Joost S., Greub G., 2022. Frontiers in public health, 10 p. 1016169. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6AAEC5C0649D]
2021
Decreased Fetal Movements: A Sign of Placental SARS-CoV-2 Infection with Perinatal Brain Injury.
Favre G., Mazzetti S., Gengler C., Bertelli C., Schneider J., Laubscher B., Capoccia R., Pakniyat F., Ben Jazia I., Eggel-Hort B. et al., 2021/12/15. Viruses, 13 (12) p. 2517. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_93841AE82729]
Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants.
Jacot D., Pillonel T., Greub G., Bertelli C., 2021/09/20. Journal of clinical microbiology, 59 (10) pp. e0094421. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FED6E6FD3E3]
Performance evaluation of the Becton Dickinson Kiestra™ IdentifA/SusceptA.
Jacot D., Sarton-Lohéac G., Coste A.T., Bertelli C., Greub G., Prod'hom G., Croxatto A., 2021/08. Clinical microbiology and infection, 27 (8) pp. 1167.e9-1167.e17. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_85C11972FFBD]
Prevalence of multidrug-resistant bacteria colonisation among asylum seekers in western Switzerland.
Kenfak-Foguena A., Nahimana Tessemo I., Bertelli C., Merz L., Cometta A., Blanc D., Senn L., Petignat C., 2021/07. Journal of infection prevention, 22 (4) pp. 173-176. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EC1FBBB6B9E2]
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik S., Marques A.C., Xing X., Silvery J., Bertelli C., De Maio F., Pournaras S., Burr T., Duffourd Y., Siemens H. et al., 2021/07. Clinical microbiology and infection, 27 (7) pp. 1036.e1-1036.e8. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_75886C076965]
Microbiota and Metabolite Modifications after Dietary Exclusion of Dairy Products and Reduced Consumption of Fermented Food in Young and Older Men.
Kim J., Burton-Pimentel K.J., Fleuti C., Blaser C., Scherz V., Badertscher R., Marmonier C., Lyon-Belgy N., Caille A., Pidou V. et al., 2021/06/01. Nutrients, 13 (6) p. 1905. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D899D602E144]
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing.
Goncalves Cabecinhas A.R., Roloff T., Stange M., Bertelli C., Huber M., Ramette A., Chen C., Nadeau S., Gerth Y., Yerly S. et al., 2021/03/25. Microorganisms, 9 (4) p. 677. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7CA145091AD]
 
Piperacillin/tazobactam selects an ampC derepressed E. cloacae complex mutant in a diabetic osteoarticular infection.
Moraz M., Bertelli C., Prod'hom G., Croxatto A., Greub G., Abou-Khalil S., Borens O., Meylan S., 2021/03. Clinical microbiology and infection, 27 (3) pp. 475-477. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_068E595B7DEB]
Pathogenic Determinants of the Mycobacterium kansasii Complex: An Unsuspected Role for Distributive Conjugal Transfer.
Tagini F., Pillonel T., Bertelli C., Jaton K., Greub G., 2021/02/10. Microorganisms, 9 (2) p. 348. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B1DD26512429]
Chlamydia pneumoniae and Mycoplasma pneumoniae in children with cystic fibrosis: impact on bacterial respiratory microbiota diversity.
Pittet L.F., Bertelli C., Scherz V., Rochat I., Mardegan C., Brouillet R., Jaton K., Mornand A., Kaiser L., Posfay-Barbe K. et al., 2021/01/06. Pathogens and disease, 79 (1) pp. ftaa074. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABE112806E5C]
2020
 
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
Dylus David, Pillonel Trestan, Opota Onya, Wüthrich Daniel, Seth-Smith Helena M. B., Egli Adrian, Leo Stefano, Lazarevic Vladimir, Schrenzel Jacques, Laurent Sacha et al., 2020/11/24. Frontiers in Microbiology, 11. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_347E9A7AF57F]
Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium Pseudomonas nitroreducens HBP-1.
Carraro N., Sentchilo V., Polák L., Bertelli C., van der Meer J.R., 2020/08/12. Genes, 11 (8) p. 930. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_206C29759190]
Genome sequencing of Mycobacterium tuberculosis clinical isolates revealed isoniazid resistance mechanisms undetected by conventional molecular methods.
Laurent S., Zakham F., Bertelli C., Merz L., Nicod L., Mazza-Stalder J., Greub G., Jaton K., Opota O., 2020/08. International journal of antimicrobial agents, 56 (2) p. 106068. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81020030909E]
Evaluation of the BD Phoenix™ CPO Detect Test for the detection of carbapenemase producers.
Croxatto A., Coste A.T., Pillonel T., Bertelli C., Greub G., Prod'hom G., 2020/05. Clinical microbiology and infection, 26 (5) pp. 644.e9-644.e15. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_10B221FFC8D5]
Letter to the editor: SARS-CoV-2 detection by real-time RT-PCR.
Pillonel T., Scherz V., Jaton K., Greub G., Bertelli C., 2020/05. Euro surveillance, 25 (21). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E0264F85CE1E]
 
AB569, a nontoxic chemical tandem that kills major human pathogenic bacteria
McDaniel Cameron T., Panmanee Warunya, Winsor Geoffrey L., Gill Erin, Bertelli Claire, Schurr Michael J., Dongare Prateek, Paul Andrew T., Ko Seung-Hyun B., Lau Gee W. et al., 2020/03/03. Proceedings of the National Academy of Sciences.
[DOI][serval:BIB_4B3B35AD326E]
Trimethylamine-N-Oxide Postprandial Response in Plasma and Urine Is Lower After Fermented Compared to Non-Fermented Dairy Consumption in Healthy Adults.
Burton K.J., Krüger R., Scherz V., Münger L.H., Picone G., Vionnet N., Bertelli C., Greub G., Capozzi F., Vergères G., 2020/01/16. Nutrients, 12 (1) p. 234. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_772166ABEA47]
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum.
Pillonel T., Tagini F., Bertelli C., Greub G., 2020/01/08. Nucleic acids research, 48 (D1) pp. D526-D534. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60D235C6962F]
2019
 
Microbial genomic island discovery, visualization and analysis.
Bertelli C., Tilley K.E., Brinkman FSL, 2019/09/27. Briefings in bioinformatics, 20 (5) pp. 1685-1698. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EC3F894F1720]
Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities.
Zakham F., Laurent S., Esteves Carreira A.L., Corbaz A., Bertelli C., Masserey E., Nicod L., Greub G., Jaton K., Mazza-Stalder J. et al., 2019/09. New microbes and new infections, 31 p. 100582. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_604EC4A7CD3F]
 
Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
Tagini F., Aeby S., Bertelli C., Droz S., Casanova C., Prod'hom G., Jaton K., Greub G., 2019/06. International journal of systematic and evolutionary microbiology, 69 (6) pp. 1696-1704. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9F91FAF18341]
Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum.
Zakham F., Pillonel T., Brunel A.S., Zambelli P.Y., Greub G., Croxatto A., Bertelli C., 2019/04. International journal of infectious diseases, 81 pp. 167-169. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DB839D64A53F]
Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship.
Pillonel T., Bertelli C., Aeby S., de Barsy M., Jacquier N., Kebbi-Beghdadi C., Mueller L., Vouga M., Greub G., 2019/04/01. Genome biology and evolution, 11 (4) pp. 1334-1344. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_396827229ADC]
2018
 
Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools.
Freschi L., Bertelli C., Jeukens J., Moore M.P., Kukavica-Ibrulj I., Emond-Rheault J.G., Hamel J., Fothergill J.L., Tucker N.P., McClean S. et al., 2018/07/01. FEMS microbiology letters, 365 (14) p. 1. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C8AD256CBA60]
 
Improved genomic island predictions with IslandPath-DIMOB.
Bertelli C., Brinkman FSL, 2018/07/01. Bioinformatics, 34 (13) pp. 2161-2167. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4F7DF741AEC1]
 
Genome sequencing and functional characterization of the non-pathogenic Klebsiella pneumoniae KpGe bacteria.
Lima W.C., Pillonel T., Bertelli C., Ifrid E., Greub G., Cosson P., 2018/05. Microbes and infection, 20 (5) pp. 293-301. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E3A61F3A6E26]
Resistome Analysis of a Carbapenemase (OXA-48)-Producing and Colistin-Resistant Klebsiella pneumoniae Strain.
Pillonel T., Nordmann P., Bertelli C., Prod' Hom G., Poirel L., Greub G., 2018/05. Antimicrobial agents and chemotherapy, 62 (5) pp. e00076-18 . Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5F1E5B63B916]
Distinct Genomic Features Characterize Two Clades of <i>Corynebacterium diphtheriae</i>: Proposal of <i>Corynebacterium diphtheriae</i> Subsp. <i>diphtheriae</i> Subsp. nov. and <i>Corynebacterium diphtheriae</i> Subsp. <i>lausannense</i> Subsp. nov.
Tagini F., Pillonel T., Croxatto A., Bertelli C., Koutsokera A., Lovis A., Greub G., 2018. Frontiers in microbiology, 9 p. 1743. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0A00CF043EE5]
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.
Pillonel T., Bertelli C., Greub G., 2018. Frontiers in microbiology, 9 p. 79. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AC985878259]
Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms.
Bertelli C., Courtois S., Rosikiewicz M., Piriou P., Aeby S., Robert S., Loret J.F., Greub G., 2018. Frontiers in microbiology, 9 p. 2520. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_50405A9AFBDC]
2017
Cedratvirus lausannensis - digging into Pithoviridae diversity.
Bertelli C., Mueller L., Thomas V., Pillonel T., Jacquier N., Greub G., 2017/10. Environmental microbiology, 19 (10) pp. 4022-4034. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D9DAF7ED0807]
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.
Bertelli C., Laird M.R., Williams K.P., Simon Fraser University Research Computing Group, Lau B.Y., Hoad G., Winsor G.L., Brinkman FSL, 2017/07/03. Nucleic acids research, 45 (W1) pp. W30-W35. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D8A6D1AB7FE1]
One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions.
Mueller L., Bertelli C., Pillonel T., Salamin N., Greub G., 2017/06/01. Genome biology and evolution, 9 (6) pp. 1432-1449. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BF5DFD01F732]
Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathogens.
Opota O., Diene S.M., Bertelli C., Prod'hom G., Eckert P., Greub G., 2017/01. International journal of antimicrobial agents, 49 (1) pp. 93-97. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_21829270BB0D]
Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress.
Hingston P., Chen J., Dhillon B.K., Laing C., Bertelli C., Gannon V., Tasara T., Allen K., Brinkman F.S., Truelstrup Hansen L. et al., 2017. Frontiers in microbiology, 8 p. 369. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CAC1165E6C76]
2016
Comparative genomics of Neisseria meningitidis strains: new targets for molecular diagnostics.
Diene S.M., Bertelli C., Pillonel T., Jacquier N., Croxatto A., Jaton K., Greub G., 2016/06. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (6) pp. 568.e1-7. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_79B332FB57D3]
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71EF45D9A3D9]
CRISPR System Acquisition and Evolution of an Obligate Intracellular Chlamydia-Related Bacterium.
Bertelli C., Cissé O.H., Rusconi B., Kebbi-Beghdadi C., Croxatto A., Goesmann A., Collyn F., Greub G., 2016. Genome Biology and Evolution, 8 (8) pp. 2376-2386. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_044EE19F2770]
EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J., Kreis J., Spänig S., Juhre T., Bertelli C., Ernst C., Goesmann A., 2016. Nucleic Acids Research, 44 (W1) pp. W22-W28. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8105EEB44781]
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.
Morales M., Sentchilo V., Bertelli C., Komljenovic A., Kryuchkova-Mostacci N., Bourdilloud A., Linke B., Goesmann A., Harshman K., Segers F. et al., 2016. PloS one, 11 (11) pp. e0165850. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_14197457242A]
2015
Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics.
Bertelli C., Pillonel T., Torregrossa A., Prod'hom G., Fischer C.J., Greub G., Giannoni E., 2015. Clinical Infectious Diseases, 60 (6) pp. 924-927. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_95B630543959]
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., 2015. Environmental Microbiology, 17 (1) pp. 91-104.
[URN][DOI][WoS][Pmid][serval:BIB_EBE76C19261B]
 
ESCCAR international congress on Rickettsia and other intracellular bacteria.
de Barsy M., Bertelli C., Jacquier N., Kebbi-Beghdadi C., Greub G., 2015. Microbes and Infection / Institut Pasteur, 17 (10) pp. 680-688. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_240ABBB1F3B9]
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.
Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., 2015. Frontiers in Microbiology, 6 (101) p. 101. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5BB2A564D83D]
Taxogenomics of the order Chlamydiales.
Pillonel T., Bertelli C., Salamin N., Greub G., 2015. International Journal of Systematic and Evolutionary Microbiology, 65 (Pt 4) pp. 1381-1393. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AD041EB6E92F]
2014
Génomique et métagénomique bactériennes: applications cliniques et importance médicale [Bacterial genomics and metagenomics: clinical applications and medical relevance]
Diene S.M., Bertelli C., Pillonel T., Schrenzel J., Greub G., 2014/11/12. Revue medicale suisse, 10 (450) pp. 2155-2161. Peer-reviewed.
[URN][Pmid][serval:BIB_6E939DC2252F]
Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum.
Bachmann N.L., Fraser T.A., Bertelli C., Jelocnik M., Gillett A., Funnell O., Flanagan C., Myers G.S., Timms P., Polkinghorne A., 2014. BMC Genomics, 15 p. 667. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_83B812A678CF]
Criblamydia sequanensis Harbors a Megaplasmid Encoding Arsenite Resistance.
Bertelli C., Goesmann A., Greub G., 2014. Genome Announcements, 2 (5) pp. e00949-14. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8707DA225B84]
2013
Crescent and star shapes of members of the Chlamydiales order: impact of fixative methods.
Rusconi B., Lienard J., Aeby S., Croxatto A., Bertelli C., Greub G., 2013. Antonie Van Leeuwenhoek, 104 (4) pp. 521-532. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9045C2B71DA0]
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.
Clarke M., Lohan A.J., Liu B., Lagkouvardos I., Roy S., Zafar N., Bertelli C., Schilde C., Kianianmomeni A., Bürglin T.R. et al., 2013. Genome Biology, 14 (2) pp. R11. Peer-reviewed.
[DOI][Pmid][serval:BIB_0DD157290706]
Lausannevirus Seroprevalence among Asymptomatic Young Adults.
Mueller L., Baud D., Bertelli C., Greub G., 2013. Intervirology, 56 (6) pp. 430-433.
[URN][DOI][WoS][Pmid][serval:BIB_0EEF6820871F]
 
Phyla Related to Planctomycetes: Members of Phylum Chlamydiae and Their Implications for Planctomycetes Cell Biology
Bertelli C, Greub G, 2013. pp. 229-241 dans Planctomycetes: Cell Structure, Origins and Biology, Humana Press.
[DOI][serval:BIB_69C49F010A94]
 
Rapid bacterial genome sequencing: methods and applications in clinical microbiology.
Bertelli C., Greub G., 2013. Clinical Microbiology and Infection, 19 (9) pp. 803-813.
[DOI][WoS][Pmid][serval:BIB_13943C1E7499]
 
RNA pentaloop structures as effective targets of regulators belonging to the RsmA/CsrA protein family.
Lapouge K., Perozzo R., Iwaszkiewicz J., Bertelli C., Zoete V., Michielin O., Scapozza L., Haas D., 2013. RNA Biology, 10 (6) pp. 1031-1041. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7F969FD46661]
2012
 
Insights in the biology of Chlamydiae
Kebbi-Beghdadi Carole, Bertelli Claire, Greub Gilbert, 2012. pp. 121-146 dans Ghigo Eric, Mottola Giovanna, Mege Jean-Louis (eds.) Host-Pathogen Interaction: At the Frontier of Cellular Microbiology chap. 8, Transworld Research Network.
[serval:BIB_1C37637FA9D0]
Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms.
Bertelli C., Greub G., 2012. Frontiers In Cellular and Infection Microbiology, 2 p. 110. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_10C9AA1B26FD]
2011
Insight into cross-talk between intra-amoebal pathogens.
Gimenez G., Bertelli C., Moliner C., Robert C., Raoult D., Fournier P.E., Greub G., 2011. BMC Genomics, 12 p. 542.
[URN][DOI][WoS][Pmid][serval:BIB_19269EDBFB0F]
Lausannevirus, a giant amoebal virus encoding histone doublets.
Thomas V., Bertelli C., Collyn F., Casson N., Telenti A., Goesmann A., Croxatto A., Greub G., 2011. Environmental Microbiology, 13 (6) pp. 1454-1466. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_865129BE5DA2]
2010
The Waddlia genome: a window into chlamydial biology.
Bertelli Claire, Collyn Francois, Croxatto Antony, Rueckert Christian, Polkinghorne Adam, Kebbi-Beghdadi Carole, Goesmann Alexander, Vaughan Lloyd, Greub Gilbert, 2010. PloS One, 5 (5) p. 10890.
[URN][DOI][WoS][Pmid][serval:BIB_D05727459AD1]
2009
High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach.
Greub G., Kebbi-Beghdadi C., Bertelli C., Collyn F., Riederer B.M., Yersin C., Croxatto A., Raoult D., 2009/12/23. PloS one, 4 (12) pp. e8423. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_23EB15A4F7BE]
2008
Low prevalence of Chlamydia trachomatis infection in asymptomatic young Swiss men
Baud D., Jaton K., Bertelli C., Kulling J.P., Greub G., 2008. BMC Infectious Diseases, 8 (45) pp. 1-5. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8A31926885C2]
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