Patrice Waridel

Publications | Mémoires et thèses

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40 publications

2023 | 2022 | 2021 | 2020 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 |
2023
Targeted treatment of injured nestmates with antimicrobial compounds in an ant society.
Frank E.T., Kesner L., Liberti J., Helleu Q., LeBoeuf A.C., Dascalu A., Sponsler D.B., Azuma F., Economo E.P., Waridel P. et al., 2023/12/29. Nature communications, 14 (1) p. 8446. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9260126B191C]
A Database of Accurate Electrophoretic Migration Patterns for Human Proteins.
Mylonas R., Potts A., Waridel P., Barblan J., Conde Rubio MDC, Widmann C., Quadroni M., 2023/02/28. Journal of molecular biology, 435 (4) p. 167933. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A2749A22BB81]
2022
Essential role of Cp190 in physical and regulatory boundary formation.
Kaushal A., Dorier J., Wang B., Mohana G., Taschner M., Cousin P., Waridel P., Iseli C., Semenova A., Restrepo S. et al., 2022/05/13. Science advances, 8 (19) pp. eabl8834. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EEEA9AFE8EED]
The mitochondrial pyruvate carrier regulates memory T cell differentiation and antitumor function.
Wenes M., Jaccard A., Wyss T., Maldonado-Pérez N., Teoh S.T., Lepez A., Renaud F., Franco F., Waridel P., Yacoub Maroun C. et al., 2022/05/03. Cell metabolism, 34 (5) pp. 731-746.e9. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_17EB92736564]
2021
The Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptides.
De Giorgi J., Fuchs C., Iwasaki M., Kim W., Piskurewicz U., Gully K., Utz-Pugin A., Mène-Saffrané L., Waridel P., Nawrath C. et al., 2021/11/22. Developmental cell, 56 (22) pp. 3066-3081.e5. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D13F41026CDB]
 
Robust and sensitive peptidomics workflow for plasma based on specific extraction, lipid removal, capillary LC setup and multinozzle ESI emitter.
Rochat B., Waridel P., Barblan J., Sottas P.E., Quadroni M., 2021/02/01. Talanta, 223 (Pt 1) p. 121617. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B6EB05E6B898]
2020
Molecular Biomarkers of Neovascular Age-Related Macular Degeneration With Incomplete Response to Anti-Vascular Endothelial Growth Factor Treatment.
Mantel I., Borgo A., Guidotti J., Forestier E., Kirsch O., Derradji Y., Waridel P., Burdet F., Mehl F., Schweizer C. et al., 2020. Frontiers in pharmacology, 11 p. 594087. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_548B1E9F5D9F]
2018
Molecular evolution of juvenile hormone esterase-like proteins in a socially exchanged fluid.
LeBoeuf A.C., Cohanim A.B., Stoffel C., Brent C.S., Waridel P., Privman E., Keller L., Benton R., 2018/12/13. Scientific reports, 8 (1) p. 17830. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C49E98634123]
The conserved threonine-rich region of the HCF-1<sub>PRO</sub> repeat activates promiscuous OGT:UDP-GlcNAc glycosylation and proteolysis activities.
Kapuria V., Röhrig U.F., Waridel P., Lammers F., Borodkin V.S., van Aalten DMF, Zoete V., Herr W., 2018/11/16. The Journal of biological chemistry, 293 (46) pp. 17754-17768. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2C5B11AB86FD]
A phosphorylation switch turns a positive regulator of phototropism into an inhibitor of the process.
Schumacher P., Demarsy E., Waridel P., Petrolati L.A., Trevisan M., Fankhauser C., 2018/06/19. Nature communications, 9 (1) p. 2403. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1E557139C580]
2017
 
MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications.
Martín-Campos T., Mylonas R., Masselot A., Waridel P., Petricevic T., Xenarios I., Quadroni M., 2017/08/04. Journal of proteome research, 16 (8) pp. 3092-3101. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FEF11715AA73]
 
AoS28D, a proline-Xaa carboxypeptidase secreted by Aspergillus oryzae.
Salamin K., Eugster P.J., Jousson O., Waridel P., Grouzmann E., Monod M., 2017/05. Applied microbiology and biotechnology, 101 (10) pp. 4129-4137. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B070804CB27F]
Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins.
Debelyy M.O., Waridel P., Quadroni M., Schneiter R., Conzelmann A., 2017. PLoS One, 12 (10) pp. e0186840. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_76684B3AA058]
Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.
Wang J., Mauvoisin D., Martin E., Atger F., Galindo A.N., Dayon L., Sizzano F., Palini A., Kussmann M., Waridel P. et al., 2017. Cell Metabolism, 25 (1) pp. 102-117. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_76CD1FF92358]
2016
Oral transfer of chemical cues, growth proteins and hormones in social insects.
LeBoeuf A.C., Waridel P., Brent C.S., Gonçalves A.N., Menin L., Ortiz D., Riba-Grognuz O., Koto A., Soares Z.G., Privman E. et al., 2016/11/29. eLife, 5 pp. e20375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E07F2B7D56EE]
 
Multigenerational effects of the anticancer drug tamoxifen and its metabolite 4-hydroxy-tamoxifen on Daphnia pulex.
Borgatta M., Waridel P., Decosterd L.A., Buclin T., Chèvre N., 2016. Science of the Total Environment, 545-546 pp. 21-29.
[DOI][WoS][Pmid][serval:BIB_C86930422DAC]
RNA Sequencing-Based Genome Reannotation of the Dermatophyte Arthroderma benhamiae and Characterization of Its Secretome and Whole Gene Expression Profile during Infection.
Tran V.D., De Coi N., Feuermann M., Schmid-Siegert E., Băguţ E.T., Mignon B., Waridel P., Peter C., Pradervand S., Pagni M. et al., 2016. mSystems, 1 (4) pp. e00036. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_126399EFFBBF]
2015
The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor
Rojas Murcia Nelson, Lee Xiaoyun, Waridel Patrice, Maspoli Alessandro, Imker Heidi J, Chai Tiancong, Walsh Christopher T, Reimmann Cornelia, 2015/03. Frontiers in Microbiology, 6 (170) p. 13. Peer-reviewed.
[DOI][serval:BIB_7FB34306D844]
Distinct OGT-Binding Sites Promote HCF-1 Cleavage.
Bhuiyan T., Waridel P., Kapuria V., Zoete V., Herr W., 2015. Plos One, 10 (8) pp. e0136636. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_867855A8F516]
 
Hsp90 inhibition induces both protein-specific and global changes in the ubiquitinome.
Quadroni M., Potts A., Waridel P., 2015. Journal of Proteomics, 120 pp. 215-229.
[DOI][WoS][Pmid][serval:BIB_2E7A04B74A17]
Proteome-Wide Effect of 17-β-Estradiol and Lipoxin A4 in an Endometriotic Epithelial Cell Line.
Sobel J.A., Waridel P., Gori I., Quadroni M., Canny G.O., 2015. Frontiers in Endocrinology, 6 p. 192.
[URN][DOI][WoS][Pmid][serval:BIB_0F17F2DA8E56]
 
The anticancer drug metabolites endoxifen and 4-hydroxy-tamoxifen induce toxic effects on Daphnia pulex in a two-generation study.
Borgatta M., Decosterd L.A., Waridel P., Buclin T., Chèvre N., 2015. Science of the Total Environment, 520 pp. 232-240.
[URN][DOI][WoS][Pmid][serval:BIB_67C40EF00BE6]
The Pseudomonas aeruginosa antimetabolite L -2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor.
Rojas Murcia N., Lee X., Waridel P., Maspoli A., Imker H.J., Chai T., Walsh C.T., Reimmann C., 2015. Frontiers in Microbiology, 6 p. 170. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9D6F98C5D32E]
2014
 
Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.
Mauvoisin D., Wang J., Jouffe C., Martin E., Atger F., Waridel P., Quadroni M., Gachon F., Naef F., 2014. Proceedings of the National Academy of Sciences of the United States of America, 111 (1) pp. 167-172.
[DOI][WoS][Pmid][serval:BIB_D6CB1961E2AD]
 
Database construction and Peptide identification strategies for proteogenomic studies on sequenced genomes.
Hernandez C., Waridel P., Quadroni M., 2014. Current Topics in Medicinal Chemistry, 14 (3) pp. 425-434.
[DOI][WoS][Pmid][serval:BIB_78D23B982235]
 
Shotgun Ecotoxicoproteomics of Daphnia pulex: Biochemical Effects of the Anticancer Drug Tamoxifen.
Borgatta M., Hernandez C., Decosterd L.A., Chèvre N., Waridel P., 2014. Journal of Proteome Research, 14 (1) pp. 279-291.
[DOI][WoS][Pmid][serval:BIB_4BA812F305DE]
2013
A Novel Pulse-Chase SILAC Strategy Measures Changes in Protein Decay and Synthesis Rates Induced by Perturbation of Proteostasis with an Hsp90 Inhibitor.
Fierro-Monti I., Racle J., Hernandez C., Waridel P., Hatzimanikatis V., Quadroni M., 2013. PLoS One, 8 (11) pp. e80423.
[URN][DOI][WoS][Pmid][serval:BIB_326DDB3DDF34]
2012
 
Evidence for a new post-translational modification in Staphylococcus aureus: Hydroxymethylation of asparagine and glutamine.
Waridel P., Ythier M., Gfeller A., Moreillon P., Quadroni M., 2012. Journal of Proteomics, 75 (6) pp. 1742-1751.
[DOI][WoS][Pmid][serval:BIB_DB18CCA01E89]
 
Proteomic and transcriptomic profiling of Staphylococcus aureus surface LPXTG-proteins: correlation with agr genotypes and adherence phenotypes.
Ythier M., Resch G., Waridel P., Panchaud A., Gfeller A., Majcherczyk P., Quadroni M., Moreillon P., 2012. Molecular and Cellular Proteomics, 11 (11) pp. 1123-1139. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ED98E07ED10F]
2011
 
Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.
Tran B.Q., Hernandez C., Waridel P., Potts A., Barblan J., Lisacek F., Quadroni M., 2011. Journal of Proteome Research, 10 (2) pp. 800-811.
[DOI][WoS][Pmid][serval:BIB_BAB04D844486]
 
Identification of novel secreted proteases during extracellular proteolysis by dermatophytes at acidic pH.
Sriranganadane D., Waridel P., Salamin K., Feuermann M., Mignon B., Staib P., Neuhaus J.M., Quadroni M., Monod M., 2011. Proteomics, 11 (22) pp. 4422-4433.
[DOI][WoS][Pmid][serval:BIB_F007F4C7B959]
Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma.
Valsesia A., Rimoldi D., Martinet D., Ibberson M., Benaglio P., Quadroni M., Waridel P., Gaillard M., Pidoux M., Rapin B. et al., 2011. PLoS One, 6 (4) pp. e18369. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5E0D3CDAAC7D]
 
O-GlcNAc transferase catalyzes site-specific proteolysis of HCF-1.
Capotosti F., Guernier S., Lammers F., Waridel P., Cai Y., Jin J., Conaway J.W., Conaway R.C., Herr W., 2011. Cell, 144 (3) pp. 376-388.
[DOI][WoS][Pmid][serval:BIB_AD874A25FC24]
 
Secreted glutamic protease rescues aspartic protease Pep deficiency in Aspergillus fumigatus during growth in acidic protein medium.
Sriranganadane D., Reichard U., Salamin K., Fratti M., Jousson O., Waridel P., Quadroni M., Neuhaus J.M., Monod M., 2011. Microbiology, 157 (5) pp. 1541-1550.
[DOI][WoS][Pmid][serval:BIB_7635EE1ACA3D]
2010
 
Glycation Isotopic Labeling with13C-Reducing Sugars for Quantitative Analysis of Glycated Proteins in Human Plasma
Priego-Capote Feliciano, Scherl Alexander, Müller Markus, Waridel Patrice, Lisacek Frédérique, Sanchez Jean-Charles, 2010/03. Molecular & Cellular Proteomics, 9 (3) pp. 579-592.
[DOI][WoS][Pmid][serval:BIB_0583E7FD6A1B]
 
Accelerated digestion for high-throughput proteomics analysis of whole bacterial proteomes.
Vaezzadeh A.R., Deshusses J.M., Waridel P., François P., Zimmermann-Ivol C.G., Lescuyer P., Schrenzel J., Hochstrasser D.F., 2010. Journal of Microbiological Methods, 80 (1) pp. 56-62.
[DOI][WoS][Pmid][serval:BIB_EDA79EF898EA]
 
Aspergillus protein degradation pathways with different secreted protease sets at neutral and acidic pH.
Sriranganadane D., Waridel P., Salamin K., Reichard U., Grouzmann E., Neuhaus J.-M., Quadroni M., Monod M., 2010. Journal of Proteome Research, 9 (7) pp. 3511-3519.
[DOI][WoS][Pmid][serval:BIB_E5632500E3A6]
2009
 
Metabolic labeling and protein linearization technology allow the study of proteins secreted by cultured cells in serum-containing media.
Colzani M., Waridel P., Laurent J., Faes E., Rüegg C., Quadroni M., 2009. Journal of Proteome research, 8 (10) pp. 4779-4788.
[DOI][WoS][Pmid][serval:BIB_7DDA894596D3]
2008
 
Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS)
Colzani M., Schutz F., Potts A., Waridel P., Quadroni M., 2008. Molecular and Cellular Proteomics, 7 (5) pp. 927-937. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_173947FB7885]
2007
 
Comprehensive analysis of proteins secreted by Trichophyton rubrum and Trichophyton violaceum under in vitro conditions.
Giddey K., Monod M., Barblan J., Potts A., Waridel P., Zaugg C., Quadroni M., 2007/08. Journal of proteome research, 6 (8) pp. 3081-3092. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6F0674DF1146]
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