Gilbert Greub

Publications | Mémoires et thèses

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545 publications

Sous presse | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | ...
Sous presse
 
Oropouche virus: A re-emerging arbovirus of clinical significance.
Desai A.N., Otter A., Koopmans M., Granata G., Grobusch M.P., Tunali V., Astorri R., Jokelainen P., Greub G., Ergönül Ö. et al. International journal of infectious diseases. Peer-reviewed.
[DOI][Pmid][serval:BIB_872FFE770078]
 
Conference report: The first Bacterial Genome Sequencing Pan-European Network Conference.
Germuskova Z., Sosa E., Lagos A.C., Aamot H.V., Beale M.A., Bertelli C., Björkmann J., Couto N., Feige L., Greub G. et al. Microbes and infection. Peer-reviewed.
[DOI][Pmid][serval:BIB_01041FBBDEC4]
 
A potential role for chlamydial infection in rheumatoid arthritis development.
Lamacchia C., Aymon R., Hattel B.C., Aeby S., Kebbi-Beghdadi C C., Gilbert B., Studer O., Norris J.M., Nolers M.V., Demoruelle M.K. et al. Rheumatology. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_42DABD0BE29B]
2024
Nanomotion technology: an innovative method to study cell metabolism in Escherichia coli, as a potential indicator for tolerance.
Aubry C., Kebbi-Beghdadi C., Luraschi-Eggemann A., Cathomen G., Cichocka D., Sturm A., Greub G., The Eradiamr Consortium, 2024/11. Journal of medical microbiology, 73 (11). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_ED9633354811]
 
Development of novel broad-range pan-genus PCR assays for the detection of Tropheryma species.
Tagini F., Belkoniene M., Jaton K., Opota O., Greub G., 2024/09. Journal of medical microbiology, 73 (9). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D6ABCC5D8FB1]
 
Implications of the 2023-2024 MPXV clade I outbreak in the Democratic Republic of Congo to global public health.
Desai A.N., Koopmans M., Otter A., Grobusch M.P., Jokelainen P., Atkinson B., Cunha F., Valdoleiros S.R., Preda V.G., Fusco F.M. et al., 2024/09. Clinical microbiology and infection, 30 (9) pp. 1092-1094. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5BA85E7D1671]
 
The world health organization pandemic agreement draft: considerations by the European Society of Clinical Microbiology and Infectious Diseases Emerging Infections Task Force.
Granata G., Astorri R., Broens E.M., Callaby H., Cunha F., Di Caro A., Fusco F.M., Greub G., Grobusch M.P., Koopmans M. et al., 2024/09. Clinical microbiology and infection, 30 (9) pp. 1095-1099. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_933E55DD88AA]
Association of pathogenic determinants of Fusobacterium necrophorum with bacteremia, and Lemierre's syndrome.
Carrara A., Bertelli C., Gardiol C., Marquis B., Andrey D.O., Schrenzel J., Pillonel T., Greub G., 2024/08/27. Scientific reports, 14 (1) p. 19804. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A29B2514B933]
Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
Mauffrey F., Bertelli C., Greub G., Senn L., Blanc D.S., 2024/07/16. Journal of clinical microbiology, 62 (7) pp. e0020324. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_729009233F3E]
 
The Impact of Laboratory Automation on the Time to Urine Microbiological Results: A Five-Year Retrospective Study.
Kritikos A., Prod'hom G., Jacot D., Croxatto A., Greub G., 2024/06/29. Diagnostics, 14 (13). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_74B2659891E7]
 
The genomic and phylogenetic analysis of Marseillevirus cajuinensis raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization.
de Azevedo B.L., Queiroz V.F., de Aquino ILM, Machado T.B., de Assis F.L., Reis E., Araújo Júnior J.P., Ullmann L.S., Colson P., Greub G. et al., 2024/06/13. Journal of virology, 98 (6) pp. e0051324. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EBE6250F0570]
Correction to: Added diagnostic value of 16S rRNA gene pan-mycobacterial PCR for nontuberculous mycobacterial infections: a 10-year retrospective study.
Andenmatten S., Opota O., Mazza-Stalder J., Nicod L., Greub G., Jaton K., 2024/06. European journal of clinical microbiology & infectious diseases, 43 (6) p. 1259. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4A965E41817]
Development and evaluation of an artificial intelligence for bacterial growth monitoring in clinical bacteriology.
Jacot D., Gizha S., Orny C., Fernandes M., Tricoli C., Marcelpoil R., Prod'hom G., Volle J-M, Greub G., Croxatto A., 2024/05/08. Journal of clinical microbiology, 62 (5) pp. e0165123. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CA319F0D5E34]
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.
Wegner F., Cabrera-Gil B., Tanguy A., Beckmann C., Beerenwinkel N., Bertelli C., Carrara M., Cerutti L., Chen C., Cordey S. et al., 2024/05/02. Microbiology spectrum, 12 (5) pp. e0362823. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6B5035C9655]
 
Chlamydia pneumoniae Upsurge at Tertiary Hospital, Lausanne, Switzerland.
Tagini F., Opota O., Greub G., 2024/04. Emerging infectious diseases, 30 (4) pp. 810-812. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F55B387540AA]
Accurate and rapid antibiotic susceptibility testing using a machine learning-assisted nanomotion technology platform.
Sturm A., Jóźwiak G., Verge M.P., Munch L., Cathomen G., Vocat A., Luraschi-Eggemann A., Orlando C., Fromm K., Delarze E. et al., 2024/03/18. Nature communications, 15 (1) p. 2037. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABB57C7C3258]
Aberrant Bodies: An Alternative Metabolic Homeostasis Allowing Survivability?
Kozusnik T., Adams S.E., Greub G., 2024/02/29. Microorganisms, 12 (3). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2EE85EDC846C]
The Chlamydia-related Waddlia chondrophila encodes functional type II toxin-antitoxin systems.
Ardissone S., Greub G., 2024/02/21. Applied and environmental microbiology, 90 (2) pp. e0068123. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7D7FE3E9C165]
Proposed Framework for Conducting Clinically Relevant Translational Biomarker Research for the Diagnosis, Prognosis and Management of Sepsis.
Ventura F., Greub G., Liles W.C., Jacob S.T., 2024/01/30. Diagnostics, 14 (3). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0C23ED34646E]
 
Environmental and geographical factors influencing the spread of SARS-CoV-2 over 2 years: a fine-scale spatiotemporal analysis.
De Ridder D., Ladoy A., Choi Y., Jacot D., Vuilleumier S., Guessous I., Joost S., Greub G., 2024. Frontiers in public health, 12 p. 1298177. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C99A4FC06539]
Impact of mutations in the mtrR, rpdlVD and rrl genes on azithromycin resistance in Neisseria gonorrhoeae.
Mauffrey F., Poncet F., Jacot D., Greub G., Nordmann P., Blanc D.S., 2024. PloS one, 19 (7) pp. e0306695. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_43F212DBA9D3]
2023
 
From microbiome composition to functional engineering, one step at a time.
Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al., 2023/12/20. Microbiology and molecular biology reviews, 87 (4) pp. e0006323. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_422DE1C48246]
Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting.
Filippidis P., Senn L., Poncet F., Grandbastien B., Prod'hom G., Greub G., Guery B., Blanc D.S., 2023/12. European journal of clinical microbiology & infectious diseases, 42 (12) pp. 1469-1476. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DBB82905A18B]
Legionnaires' disease in Switzerland: rationale and study protocol of a prospective national case-control and molecular source attribution study (SwissLEGIO).
Fischer F.B., Bigler M., Mäusezahl D., Hattendorf J., Egli A., Julian T.R., Rölli F., Gaia V., Wymann M., Fridez F. et al., 2023/10. Infection, 51 (5) pp. 1467-1479. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60B326644788]
Nanomotion technology in combination with machine learning: a new approach for a rapid antibiotic susceptibility test for Mycobacterium tuberculosis.
Vocat A., Sturm A., Jóźwiak G., Cathomen G., Świątkowski M., Buga R., Wielgoszewski G., Cichocka D., Greub G., Opota O., 2023/10. Microbes and infection, 25 (7) p. 105151. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6922CABC8BD6]
Ticks and Chlamydia-Related Bacteria in Swiss Zoological Gardens Compared to in Contiguous and Distant Control Areas.
Vanat V., Aeby S., Greub G., 2023/09/30. Microorganisms, 11 (10) p. 2468. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_82820DB1EEA6]
Spontaneous Aberrant Bodies Formation in Human Pneumocytes Infected with Estrella lausannensis.
Rovero A., Kebbi-Beghdadi C., Greub G., 2023/09/22. Microorganisms, 11 (10) p. 2368. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_34EFA3AE06FC]
IVDR: Analysis of the Social, Economic, and Practical Consequences of the Application of an Ordinance of the In Vitro Diagnostic Ordinance in Switzerland.
Coste A.T., Egli A., Schrenzel J., Nickel B., Zbinden A., Lienhard R., Dumoulin A., Risch M., Greub G., Coordinated Clinical Commission of Microbiology (CCCM), 2023/09/11. Diagnostics, 13 (18). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9DA76705655D]
Use of gene sequences as type for naming prokaryotes: Recommendations of the international committee on the taxonomy of chlamydiae.
Greub G., Pillonel T., Bavoil P.M., Borel N., Campbell L.A., Dean D., Hefty S., Horn M., Morré S.A., Ouellette S.P. et al., 2023/09. New microbes and new infections, 54 p. 101158. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7184AA4BCCD0]
 
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort.
Galperine T., Choi Y., Pagani J.L., Kritikos A., Papadimitriou-Olivgeris M., Méan M., Scherz V., Opota O., Greub G., Guery B. et al., 2023/08/18. BMC infectious diseases, 23 (1) p. 537. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C4AC9A4A0DF4]
 
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae: Minutes of the closed meeting, March 20, Meeting of the Chlamydia Research Society, Omaha, NE, USA
Borel Nicole, Greub Gilbert, 2023/08/16. International Journal of Systematic and Evolutionary Microbiology, 73 (8). Peer-reviewed.
[DOI][WoS][serval:BIB_25235C535556]
The Statistical Analysis of the Varying Brain.
Chén Oliver Y., Thanh Vũ Duy, Greub Gilbert, Cao Hengyi, He Xingru, Muller Yannick, Petrovas Constantinos, Shou Haochang, Nguyen Viet-Dung, Zhi Bangdong et al., 2023/07/02. IEEE Statistical Signal Processing (SSP). Peer-reviewed.
[URN][DOI][WoS][serval:BIB_C6B3B6AA1F8B]
Temperature Affects the Host Range of Rhabdochlamydia porcellionis.
Marquis B., Ardissone S., Greub G., 2023/05/31. Applied and environmental microbiology, 89 (5) pp. e0030923. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_74719FF9DB98]
Leptospirose, le défi diagnostique d’un cas autochtone [Leptospirosis, the diagnostic challenge of an indigenous case]
Martelli F., Gay Des Combes Gliven P., De Vallière S., Favrat B., Greub G., Kokkinakis I., 2023/05/10. Revue medicale suisse, 19 (826) pp. 916-919. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_E6E80C76206E]
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.
Neves A., Walther D., Martin-Campos T., Barbie V., Bertelli C., Blanc D., Bouchet G., Erard F., Greub G., Hirsch H.H. et al., 2023/05. Microbial genomics, 9 (5). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7F921402DD4E]
 
Rectal shedding of monkeypox virus in a patient coinfected with Chlamydia trachomatis and Neisseria gonorrhoeae: a case report.
Desgranges F., Glampedakis E., Christinet V., Encarnação S., Fernandes C., Greub G., Opota O., Cavassini M., 2023/03/06. Journal of medical case reports, 17 (1) p. 94. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4F21C7D1F691]
An NlpC/P60 protein catalyzes a key step in peptidoglycan recycling at the intersection of energy recovery, cell division and immune evasion in the intracellular pathogen Chlamydia trachomatis.
Reuter J., Otten C., Jacquier N., Lee J., Mengin-Lecreulx D., Löckener I., Kluj R., Mayer C., Corona F., Dannenberg J. et al., 2023/02. PLoS pathogens, 19 (2) pp. e1011047. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E31A9E52AEF0]
 
Quality of MALDI-TOF mass spectra in routine diagnostics: results from an international external quality assessment including 36 laboratories from 12 countries using 47 challenging bacterial strains.
Cuénod A., Aerni M., Bagutti C., Bayraktar B., Boz E.S., Carneiro C.B., Casanova C., Coste A.T., Damborg P., van Dam D.W. et al., 2023/02. Clinical microbiology and infection, 29 (2) pp. 190-199. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B0CFEBB3DD03]
 
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae: Minutes of the closed meeting, 25 August 2022, ESCCAR Meeting Lausanne, Switzerland
Borel Nicole, Greub Gilbert, 2023/01/27. dans International Journal of Systematic and Evolutionary Microbiology, Microbiology Society.
[DOI][WoS][serval:BIB_112C0F9D2CBE]
 
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data.
Nadeau S.A., Vaughan T.G., Beckmann C., Topolsky I., Chen C., Hodcroft E., Schär T., Nissen I., Santacroce N., Burcklen E. et al., 2023/01/25. Science translational medicine, 15 (680) pp. eabn7979. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CD53A1467C94]
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia.
Asare P.T., Lee C.H., Hürlimann V., Teo Y., Cuénod A., Akduman N., Gekeler C., Afrizal A., Corthesy M., Kohout C. et al., 2023. Frontiers in microbiology, 14 p. 1104707. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3CB9A6F82FA0]
Antigen rapid tests, nasopharyngeal PCR and saliva PCR to detect SARS-CoV-2: A prospective comparative clinical trial.
Schwob J.M., Miauton A., Petrovic D., Perdrix J., Senn N., Gouveia A., Jaton K., Opota O., Maillard A., Minghelli G. et al., 2023. PloS one, 18 (2) pp. e0282150. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E11C27628AE5]
 
Corrigendum: A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia.
Asare P.T., Lee C.H., Hürlimann V., Teo Y., Cuénod A., Akduman N., Gekeler C., Afrizal A., Corthesy M., Kohout C. et al., 2023. Frontiers in microbiology, 14 p. 1208177. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D28F1D58D895]
Performance of microbiological tests for tuberculosis diagnostic according to the type of respiratory specimen: A 10-year retrospective study.
Boldi M.O., Denis-Lessard J., Neziri R., Brouillet R., von-Garnier C., Chavez V., Mazza-Stalder J., Jaton K., Greub G., Opota O., 2023. Frontiers in cellular and infection microbiology, 13 p. 1131241. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F4A71366B41B]
SARS-CoV-2 neutralizing antibody response in vaccinated and non-vaccinated hospital healthcare workers with or without history of infection.
Jacot D., von Rotz U., Pellaton C., Blondet F., Aebischer O., Perreau M., De Rham M., Pantaleo G., Marchetti O., Greub G., 2023. Microbes and infection, 25 (1-2) p. 105077. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_35EA6DCB0511]
2022
 
Comparison of Nasopharyngeal and Saliva Swab Nucleic Acid Amplification and Rapid Antigen Testing To Detect Omicron SARS-CoV-2 Variant of Concern: a Prospective Clinical Trial (OMICRON).
Kritikos A., Caruana G., Lazor-Blanchet C., Currat M., Chiche J.D., Vollenweider P., Bart P.A., Opota O., Greub G., 2022/12/21. Microbiology spectrum, 10 (6) pp. e0392322. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6A6FC8A196FD]
Investigating nanomotion-based technology (Resistell AST) for rapid antibiotic susceptibility testing among adult patients admitted to a tertiary-care hospital with Gram-negative bacteraemia: protocol for a prospective, observational, cross-sectional, single-arm study.
Caruana G., Kritikos A., Vocat A., Luraschi A., Delarze E., Sturm A., Pla Verge M., Jozwiak G., Kushwaha S., Delaloye J. et al., 2022/11/21. BMJ open, 12 (11) pp. e064016. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AD482F96FC1]
 
Antibody response and intra-host viral evolution after plasma therapy in COVID-19 patients pre-exposed or not to B-cell-depleting agents.
Gachoud D., Pillonel T., Tsilimidos G., Battolla D., Dumas D., Opota O., Fontana S., Vollenweider P., Manuel O., Greub G. et al., 2022/11. British journal of haematology, 199 (4) pp. 549-559. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_801AF06A907A]
Cross-reaction of naturally-produced β-lactamases from Citrobacter farmeri and Citrobacter amalonaticus with immunological detection of CTX-M enzymes.
Ortiz de la Rosa J.M., Bouvier M., Poirel L., Greub G., Blanc D., Nordmann P., 2022/10. Diagnostic microbiology and infectious disease, 104 (2) p. 115760. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AC11CB2E861D]
Author Correction: Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin.
Staub E., Marti H., Biondi R., Levi A., Donati M., Leonard C.A., Ley S.D., Pillonel T., Greub G., Seth-Smith HMB et al., 2022/09/28. Scientific reports, 12 (1) p. 16171. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9538A452E4A7]
 
SARS-CoV-2 seroprevalence in hospital healthcare workers in Western Switzerland at the end of the second pandemic wave.
Jacot D., von Rotz U., Blondet F., Aebischer O., Matthieu P., De Rham M., Pantaleo G., Marchetti O., Greub G., 2022/08. Journal of medical microbiology, 71 (8). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2E339D4530BF]
 
Corrigendum to "A probabilistic approach to evaluate salivary microbiome in forensic science when the defense says: 'It is my twin brother'" [Forensic Sci. Int. Genet. 57, 102638].
Bozza S., Scherz V., Greub G., Falquet L., Taroni F., 2022/07..
[DOI][WoS][Pmid][serval:BIB_48280B21B6F2]
 
Performance Evaluation of the Quantamatrix QMAC-dRAST System for Rapid Antibiotic Susceptibility Testing Directly from Blood Cultures.
Rosselin M., Prod'hom G., Greub G., Croxatto A., 2022/06/14. Microorganisms, 10 (6) p. 1212. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ADE99A36A933]
 
Call for consensus in Chlamydia trachomatis nomenclature: moving from biovars, serovars, and serotypes to genovariants and genotypes.
de Vries HJC, Pannekoek Y., Dean D., Bavoil P.M., Borel N., Greub G., Morré S.A., ICSP Subcommittee on the Taxonomy of Chlamydiae, 2022/06. Clinical microbiology and infection, 28 (6) pp. 761-763. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8B680C4AFA5A]
Multifocal lymphadenopathies with polyclonal reactions primed after EBV infection in a mRNA-1273 vaccine recipient.
Girardin F.R., Tzankov A., Pantaleo G., Livio F., Greub G., 2022/05/23. Swiss medical weekly, 152 pp. w30188. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_378A2D414165]
Anti-SARS-CoV-2 Titers Predict the Severity of COVID-19.
Kritikos A., Gabellon S., Pagani J.L., Monti M., Bochud P.Y., Manuel O., Coste A., Greub G., Perreau M., Pantaleo G. et al., 2022/05/18. Viruses, 14 (5) p. 1089. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AA364497D07]
Assessment of SARS-CoV-2 tests costs and reimbursement tariffs readjustments during the COVID-19 pandemic.
Caruana G., Brouillet R., Opota O., Greub G., 2022/05/09. Swiss medical weekly, 152 pp. w30168. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AF0452B7EBED]
Evaluation of a Multiplex Real-Time PCR Assay for Detecting Chlamydia trachomatis in Vaginal Samples.
Kebbi-Beghdadi C., Aeby S., Baud D., Greub G., 2022/05/04. Diagnostics, 12 (5) p. 1141. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5BDC61D703F3]
Building up a clinical microbiota profiling: a quality framework proposal.
Scherz V., Greub G., Bertelli C., 2022/05. Critical reviews in microbiology, 48 (3) pp. 356-375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4C5A1B1E944C]
 
Mycoplasma pneumoniae detections before and during the COVID-19 pandemic: results of a global survey, 2017 to 2021.
Meyer Sauteur P.M., Beeton M.L., Uldum S.A., Bossuyt N., Vermeulen M., Loens K., Pereyre S., Bébéar C., Keše D., Day J. et al., 2022/05. Euro surveillance, 27 (19) pp. 32-50. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A9F771385A8B]
Staphylococcus aureus résistant à la méticilline : 15 ans de surveillance moléculaire en Suisse romande [Methicillin-resistant Staphylococcus aureus: 15 years of molecular epidemiology in Western Switzerland]
Blanc D.S., Grandbastien B., Bally F., Lienhard R., Tritten M.L., Clerc O., Fracheboud D., Pfister S., Chuard C., Burr M. et al., 2022/04/13. Revue medicale suisse, 18 (777) pp. 724-728. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_2931EA6F12A4]
A probabilistic approach to evaluate salivary microbiome in forensic science when the Defense says: `It is my twin brother'.
Bozza S., Scherz V., Greub G., Falquet L., Taroni F., 2022/03. Forensic science international. Genetics, 57 p. 102638. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4128349F27C6]
 
Lausannevirus bilevel set-points.
Mueller L., Moreno H., Kunz S., Greub G., 2022/03. New microbes and new infections, 46 p. 100966. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_39E9C18B0D13]
Unexpected associations between respiratory viruses and bacteria with Pulmonary Function Testing in children suffering from Cystic Fibrosis (MUCOVIB study).
Scherz V., Caruana G., Taffé P., Brouillet R., Bertelli C., Jaton K., Fougère Y., Posfay-Barbe K.M., Mornand A., Rochat-Guignard I. et al., 2022/03. Journal of cystic fibrosis, 21 (2) pp. e158-e164. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DE1F69949AB8]
 
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae, minutes of the closed meeting, 07 October 2021, via Webex.
Borel N., Greub G., 2022/02. International journal of systematic and evolutionary microbiology, 72 (2) p. 005213. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_36592F8FE385]
 
Multicentre study on the reproducibility of MALDI-TOF MS for nontuberculous mycobacteria identification.
Rodriguez-Temporal D., Alcaide F., Mareković I., O'Connor J.A., Gorton R., van Ingen J., Van den Bossche A., Héry-Arnaud G., Beauruelle C., Orth-Höller D. et al., 2022/01/24. Scientific reports, 12 (1) p. 1237. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0A7FEDA0D9E4]
 
External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories.
Wegner F., Roloff T., Huber M., Cordey S., Ramette A., Gerth Y., Bertelli C., Stange M., Seth-Smith HMB, Mari A. et al., 2022/01/19. Journal of clinical microbiology, 60 (1) pp. e0169821. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2E7163A8114F]
Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses.
Choi Y., Ladoy A., De Ridder D., Jacot D., Vuilleumier S., Bertelli C., Guessous I., Pillonel T., Joost S., Greub G., 2022. Frontiers in public health, 10 p. 1016169. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6AAEC5C0649D]
Molecular typing of Clostridioides difficile from frozen stool samples to investigate cross-transmissions: A proof of concept.
Blanc D.S., Poncet F., Grandbastien B., Prod'hom G., Greub G., Senn L., 2022. Indian journal of medical microbiology, 40 (4) pp. 531-535. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_AA245F1842BE]
 
Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course.
Aamot H.V., Claas ECJ, Couto N., Westh H., Greub G., Rossen JWA, 2022. New microbes and new infections, 49-50 p. 101046. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2433D81F9449]
2021
Decreased Fetal Movements: A Sign of Placental SARS-CoV-2 Infection with Perinatal Brain Injury.
Favre G., Mazzetti S., Gengler C., Bertelli C., Schneider J., Laubscher B., Capoccia R., Pakniyat F., Ben Jazia I., Eggel-Hort B. et al., 2021/12/15. Viruses, 13 (12) p. 2517. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_93841AE82729]
 
Multicenter Technical Validation of 30 Rapid Antigen Tests for the Detection of SARS-CoV-2 (VALIDATE).
Greub G., Caruana G., Schweitzer M., Imperiali M., Muigg V., Risch M., Croxatto A., Opota O., Heller S., Albertos Torres D. et al., 2021/12/15. Microorganisms, 9 (12) p. 2589. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F3DCE9F873C8]
PCR performance in the SARS-CoV-2 Omicron variant of concern?
Metzger CMJA, Lienhard R., Seth-Smith HMB, Roloff T., Wegner F., Sieber J., Bel M., Greub G., Egli A., 2021/12/06. Swiss medical weekly, 151 pp. w30120. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_679AEA543712]
 
Hypervirulent Klebsiella pneumoniae ST23 producing OXA-48 in Switzerland.
Blanc D.S., Poirel L., Van Singer M., Greub G., Nordmann P., 2021/12. International journal of antimicrobial agents, 58 (6) p. 106457. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9E9462F72109]
 
Multicenter Evaluation of Rapid BACpro<sup>®</sup> II for the Accurate Identification of Microorganisms Directly from Blood Cultures Using MALDI-TOF MS.
Oviaño M., Ingebretsen A., Steffensen A.K., Croxatto A., Prod'hom G., Quiroga L., Bou G., Greub G., Rodríguez-Temporal D., Rodríguez-Sánchez B., 2021/12/01. Diagnostics, 11 (12) p. 2251. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7F62466B4AB7]
Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants.
Jacot D., Pillonel T., Greub G., Bertelli C., 2021/09/20. Journal of clinical microbiology, 59 (10) pp. e0094421. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FED6E6FD3E3]
 
Size and duration of COVID-19 clusters go along with a high SARS-CoV-2 viral load: A spatio-temporal investigation in Vaud state, Switzerland.
Ladoy A., Opota O., Carron P.N., Guessous I., Vuilleumier S., Joost S., Greub G., 2021/09/15. The Science of the total environment, 787 p. 147483. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7472C94BBC88]
 
Sensitivity of Rapid Antigen Testing and RT-PCR Performed on Nasopharyngeal Swabs versus Saliva Samples in COVID-19 Hospitalized Patients: Results of a Prospective Comparative Trial (RESTART).
Kritikos A., Caruana G., Brouillet R., Miroz J.P., Abed-Maillard S., Stieger G., Opota O., Croxatto A., Vollenweider P., Bart P.A. et al., 2021/09/09. Microorganisms, 9 (9) p. 1910. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F1553D2BFA41]
 
Author Correction: Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin.
Staub E., Marti H., Biondi R., Levi A., Donati M., Leonard C.A., Ley S.D., Pillonel T., Greub G., Seth-Smith HMB et al., 2021/09/08. Scientific reports, 11 (1) p. 18244. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3948A9CB0AE5]
 
An Educational Game Evening for Medical Residents: A Proof of Concept to Evaluate the Impact on Learning of the Use of Games.
Ghelfenstein-Ferreira T., Beaumont A.L., Dellière S., Peiffer-Smadja N., Pineros N., Carbonnelle E., Greub G., Abbara S., Luong Nguyen L.B., Lescat M., 2021/09/01. Journal of microbiology & biology education, 22 (2) pp. e00119-21. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7CFD8ED2910E]
 
Evaluation of sixteen ELISA SARS-CoV-2 serological tests.
Jacot D., Moraz M., Coste A.T., Aubry C., Sacks J.A., Greub G., Croxatto A., 2021/09. Journal of clinical virology, 142 p. 104931. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_00982AEB2445]
Pancreatitis, hypereosinophilia and bilateral pulmonary infiltrates as presentation of acute Q fever.
Cancela Costa A., Chheang C., Thorens O., Lamy O., Prella M., Babaker M., Lamoth F., Greub G., 2021/09. New microbes and new infections, 43 p. 100940. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6025077A999E]
Performance evaluation of the Becton Dickinson Kiestra™ IdentifA/SusceptA.
Jacot D., Sarton-Lohéac G., Coste A.T., Bertelli C., Greub G., Prod'hom G., Croxatto A., 2021/08. Clinical microbiology and infection, 27 (8) pp. 1167.e9-1167.e17. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_85C11972FFBD]
Performance of RT-PCR on Saliva Specimens Compared With Nasopharyngeal Swabs for the Detection of SARS-CoV-2 in Children: A Prospective Comparative Clinical Trial.
Fougère Y., Schwob J.M., Miauton A., Hoegger F., Opota O., Jaton K., Brouillet R., Greub G., Genton B., Gehri M. et al., 2021/08/01. The Pediatric infectious disease journal, 40 (8) pp. e300-e304. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_420EB68B8459]
SARS-CoV-2 seroprevalence in healthcare workers of a Swiss tertiary care centre at the end of the first wave: a cross-sectional study.
Meylan S., Dafni U., Lamoth F., Tsourti Z., Lobritz M.A., Regina J., Bressin P., Senn L., Grandbastien B., Andre C. et al., 2021/07/05. BMJ open, 11 (7) pp. e049232. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_471F833F0211]
Encephalopathies Associated With Severe COVID-19 Present Neurovascular Unit Alterations Without Evidence for Strong Neuroinflammation.
Bernard-Valnet R., Perriot S., Canales M., Pizzarotti B., Caranzano L., Castro-Jiménez M., Epiney J.B., Vijiala S., Salvioni-Chiabotti P., Anichini A. et al., 2021/07. Neurology, 8 (5) pp. e1029. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2403F6DD5AAC]
 
Prevalence of SARS-CoV-2 in Household Members and Other Close Contacts of COVID-19 Cases: A Serologic Study in Canton of Vaud, Switzerland.
Dupraz J., Butty A., Duperrex O., Estoppey S., Faivre V., Thabard J., Zuppinger C., Greub G., Pantaleo G., Pasquier J. et al., 2021/07. Open forum infectious diseases, 8 (7) pp. ofab149. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FDA752E9104B]
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik S., Marques A.C., Xing X., Silvery J., Bertelli C., De Maio F., Pournaras S., Burr T., Duffourd Y., Siemens H. et al., 2021/07. Clinical microbiology and infection, 27 (7) pp. 1036.e1-1036.e8. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_75886C076965]
The dark side of SARS-CoV-2 rapid antigen testing: screening asymptomatic patients.
Caruana G., Lebrun L.L., Aebischer O., Opota O., Urbano L., de Rham M., Marchetti O., Greub G., 2021/07. New microbes and new infections, 42 p. 100899. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B2C6AA99CFBC]
Microbiota and Metabolite Modifications after Dietary Exclusion of Dairy Products and Reduced Consumption of Fermented Food in Young and Older Men.
Kim J., Burton-Pimentel K.J., Fleuti C., Blaser C., Scherz V., Badertscher R., Marmonier C., Lyon-Belgy N., Caille A., Pidou V. et al., 2021/06/01. Nutrients, 13 (6) p. 1905. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D899D602E144]
 
Whipple disease: a 15-year retrospective study on 36 patients with positive polymerase chain reaction for Tropheryma whipplei.
Duss F.R., Jaton K., Vollenweider P., Troillet N., Greub G., 2021/06. Clinical microbiology and infection, 27 (6) pp. 910.e9-910.e13. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C192E275911F]
Self-testing for SARS-CoV-2: importance of lay communication.
Coste A.T., Egli A., Greub G., 2021/05/24. Swiss medical weekly, 151 pp. w20526. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A3FF3275F622]
 
False Immunological Detection of CTX-M Enzymes in Klebsiella oxytoca.
Ortiz de la Rosa J.M., Demord A., Poirel L., Greub G., Blanc D., Nordmann P., 2021/05/19. Journal of clinical microbiology, 59 (6) pp. e00609-21. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_42E5B2EFD0F6]
Impact of different SARS-CoV-2 assays on laboratory turnaround time.
Marquis B., Opota O., Jaton K., Greub G., 2021/05. Journal of medical microbiology, 70 (5). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_568573E3CB88]
 
Implementing SARS-CoV-2 Rapid Antigen Testing in the Emergency Ward of a Swiss University Hospital: The INCREASE Study.
Caruana G., Croxatto A., Kampouri E., Kritikos A., Opota O., Foerster M., Brouillet R., Senn L., Lienhard R., Egli A. et al., 2021/04/10. Microorganisms, 9 (4) p. 798. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0FC767B1B433]
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing.
Goncalves Cabecinhas A.R., Roloff T., Stange M., Bertelli C., Huber M., Ramette A., Chen C., Nadeau S., Gerth Y., Yerly S. et al., 2021/03/25. Microorganisms, 9 (4) p. 677. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7CA145091AD]
 
Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae.
Colpaert M., Kadouche D., Ducatez M., Pillonel T., Kebbi-Beghdadi C., Cenci U., Huang B., Chabi M., Maes E., Coddeville B. et al., 2021/03/05. Communications biology, 4 (1) p. 296. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_784BDEF3A2A4]
L’hémoculture est négative (vraiment ?) [Blood culture is negative (really?)]
Scotti C., Castioni J., Garnier A., Senn L., Greub G., Gachoud D., 2021/03/03. Forum médical suisse - Swiss Medical Forum, 21 (9-10) pp. 160-162. Peer-reviewed.
[URN][DOI][serval:BIB_ED9375131018]
L’hémoculture est positive (vraiment ?) [Blood culture is positive (really?)]
Scotti C., Castioni J., Garnier A., Senn L., Greub G., Gachoud D., 2021/03/03. Forum médical suisse - Swiss Medical Forum, 21 (9-10) pp. 157-159. Peer-reviewed.
[URN][DOI][serval:BIB_1C6F6864E8A5]
 
Piperacillin/tazobactam selects an ampC derepressed E. cloacae complex mutant in a diabetic osteoarticular infection.
Moraz M., Bertelli C., Prod'hom G., Croxatto A., Greub G., Abou-Khalil S., Borens O., Meylan S., 2021/03. Clinical microbiology and infection, 27 (3) pp. 475-477. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_068E595B7DEB]
SARS-CoV-2 ACE-receptor detection in the placenta throughout pregnancy.
Gengler C., Dubruc E., Favre G., Greub G., de Leval L., Baud D., 2021/03. Clinical microbiology and infection, 27 (3) pp. 489-490. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_363197A2C65B]
Pathogenic Determinants of the Mycobacterium kansasii Complex: An Unsuspected Role for Distributive Conjugal Transfer.
Tagini F., Pillonel T., Bertelli C., Jaton K., Greub G., 2021/02/10. Microorganisms, 9 (2) p. 348. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B1DD26512429]
 
Evaluation of the performance of rapid tests for screening carriers of acquired ESBL-producing Enterobacterales and their impact on turnaround time.
Blanc D.S., Poncet F., Grandbastien B., Greub G., Senn L., Nordmann P., 2021/02. The Journal of hospital infection, 108 pp. 19-24. Peer-reviewed.
[DOI][Pmid][serval:BIB_830AE303D4CA]
 
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae, minutes of the closed meeting, 10 September 2020, via Zoom.
Borel N., Greub G., 2021/02. International journal of systematic and evolutionary microbiology, 71 (2). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2CABDE393FD5]
Changes in SARS-CoV-2 Spike versus Nucleoprotein Antibody Responses Impact the Estimates of Infections in Population-Based Seroprevalence Studies.
Fenwick C., Croxatto A., Coste A.T., Pojer F., André C., Pellaton C., Farina A., Campos J., Hacker D., Lau K. et al., 2021/01/13. Journal of virology, 95 (3) pp. e01828-20. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_95BA21CCB9C1]
Chlamydia pneumoniae and Mycoplasma pneumoniae in children with cystic fibrosis: impact on bacterial respiratory microbiota diversity.
Pittet L.F., Bertelli C., Scherz V., Rochat I., Mardegan C., Brouillet R., Jaton K., Mornand A., Kaiser L., Posfay-Barbe K. et al., 2021/01/06. Pathogens and disease, 79 (1) pp. ftaa074. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABE112806E5C]
 
An Automated Dashboard to Improve Laboratory COVID-19 Diagnostics Management.
Maury E., Boldi M.O., Greub G., Chavez V., Jaton K., Opota O., 2021. Frontiers in digital health, 3 p. 773986. Peer-reviewed.
[DOI][Pmid][serval:BIB_F755C62F731E]
 
Comparison of SARS-CoV-2 serological tests with different antigen targets.
Coste A.T., Jaton K., Papadimitriou-Olivgeris M., Greub G., Croxatto A., 2021/01. Journal of clinical virology, 134 p. 104690. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E2447F373497]
 
Computer-Aided Medical Microbiology Monitoring Tool: A Strategy to Adapt to the SARS-CoV-2 Epidemic and That Highlights RT-PCR Consistency.
Mueller L., Scherz V., Greub G., Jaton K., Opota O., 2021. Frontiers in cellular and infection microbiology, 11 p. 594577. Peer-reviewed.
[DOI][Pmid][serval:BIB_6B431B99FDA3]
2020
 
Nested Species Distribution Models of Chlamydiales in Ixodes ricinus (Tick) Hosts in Switzerland.
Rochat E., Vuilleumier S., Aeby S., Greub G., Joost S., 2020/12/17. Applied and environmental microbiology, 87 (1) pp. e01237-20. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_353A655031DD]
 
Quel test pour Chlamydia trachomatis?
Salamin Pauline, Kraege Vanessa, Greub Gilbert, 2020/12/15. Forum Médical Suisse ‒ Swiss Medical Forum. Peer-reviewed.
[DOI][serval:BIB_F27C72D415E4]
Epidemiology of sexually transmitted infections among female sex workers in Switzerland: a local, exploratory, cross-sectional study
Vu F., Cavassini M., D'Acremont V., Greub G., Jaton K., Masserey E., Pongelli S., Bouche L., Ngarambe C., Bize R. et al., 2020/12/14. Swiss medical weekly, 150 pp. w20357. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C47E0DC75726]
 
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
Dylus David, Pillonel Trestan, Opota Onya, Wüthrich Daniel, Seth-Smith Helena M. B., Egli Adrian, Leo Stefano, Lazarevic Vladimir, Schrenzel Jacques, Laurent Sacha et al., 2020/11/24. Frontiers in Microbiology, 11. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_347E9A7AF57F]
Transcriptional Landscape of Waddlia chondrophila Aberrant Bodies Induced by Iron Starvation.
Ardissone S., Scherler A., Pillonel T., Martin V., Kebbi-Beghdadi C., Greub G., 2020/11/24. Microorganisms, 8 (12) p. 1848. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6602FA76FCAE]
Assessing the efficacy and impact of a personalised smoking cessation intervention among type 2 diabetic smokers: study protocol for an open-label randomised controlled trial (DISCGO-RCT).
Clair C., Augsburger A., Birrer P., Locatelli I., Schwarz J., Greub G., Zanchi A., Jacot-Sadowski I., Puder J.J., 2020/11/19. BMJ open, 10 (11) pp. e040117. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B8E00400B6EE]
 
Comparison of SARS-CoV-2 RT-PCR on a high-throughput molecular diagnostic platform and the cobas SARS-CoV-2 test for the diagnostic of COVID-19 on various clinical samples.
Opota O., Brouillet R., Greub G., Jaton K., 2020/11/11. Pathogens and disease, 78 (8) pp. ftaa061. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_50F61B3E6CFD]
Presence and diversity of Chlamydiae bacteria in Spinturnix myoti, an ectoparasite of bats
Thiévent Kevin, Szentiványi Tamara, Aeby Sébastien, Glaizot Olivier, Christe Philippe, Greub Gilbert, 2020/11/02. Parasite, 27 p. 54.
[URN][DOI][WoS][Pmid][serval:BIB_1DE027DB1313]
 
Universal admission screening strategy for COVID-19 highlighted the clinical importance of reporting SARS-CoV-2 viral loads.
Moraz M., Jacot D., Papadimitriou-Olivgeris M., Senn L., Greub G., Jaton K., Opota O., 2020/11. New microbes and new infections, 38 p. 100820. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C560AB96A04F]
Vertical transmission and materno-fetal outcomes in 13 patients with coronavirus disease 2019.
Masmejan S., Pomar L., Favre G., Panchaud A., Giannoni E., Greub G., Baud D., 2020/11. Clinical microbiology and infection, 26 (11) pp. 1585-1587. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_96AF31F294C4]
Myiases d’ici et d’ailleurs : pseudo-furonculose et bactériémie à Ignatzschineria larvae [Myases from here and elsewhere : pseudo-furonculosis and Ignatzschineria larvae bacteremia]
Berthod D., Duss F.R., Palazzuolo M., Eyer M., Onya O., Aellen S., Bettschart V., Schmid T., Greub G., Troillet N., 2020/10/14. Revue medicale suisse, 16 (710) pp. 1932-1936. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_BF0186BF9338]
 
Digital microbiology.
Egli A., Schrenzel J., Greub G., 2020/10. Clinical microbiology and infection, 26 (10) pp. 1324-1331. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AFF7F611334C]
Serum antibody response in critically ill patients with COVID-19.
Longchamp A., Longchamp J., Croxatto A., Greub G., Sanchez B., Delaloye J., Study Group, 2020/10. Intensive care medicine, 46 (10) pp. 1921-1923. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B7AF91220C37]
Diagnostic strategies for SARS-CoV-2 infection and interpretation of microbiological results.
Caruana G., Croxatto A., Coste A.T., Opota O., Lamoth F., Jaton K., Greub G., 2020/09. Clinical microbiology and infection, 26 (9) pp. 1178-1182. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EB349E4D572A]
Genome sequencing of Mycobacterium tuberculosis clinical isolates revealed isoniazid resistance mechanisms undetected by conventional molecular methods.
Laurent S., Zakham F., Bertelli C., Merz L., Nicod L., Mazza-Stalder J., Greub G., Jaton K., Opota O., 2020/08. International journal of antimicrobial agents, 56 (2) p. 106068. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81020030909E]
Venous thromboembolism in critically Ill patients with COVID-19: Results of a screening study for deep vein thrombosis.
Longchamp A., Longchamp J., Manzocchi-Besson S., Whiting L., Haller C., Jeanneret S., Godio M., Garcia Martinez J.J., Bonjour T., Caillat M. et al., 2020/07. Research and practice in thrombosis and haemostasis, 4 (5) pp. 842-847. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F213C2D7C2EC]
 
Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats.
Fritschi J., Marti H., Seth-Smith HMB, Aeby S., Greub G., Meli M.L., Hofmann-Lehmann R., Mühldorfer K., Stokar-Regenscheit N., Wiederkehr D. et al., 2020/06/26. BMC microbiology, 20 (1) p. 182. Peer-reviewed.
[DOI][Pmid][serval:BIB_094B169184C5]
Screening of Chlamydia trachomatis and Waddlia chondrophila Antibodies in Women with Tubal Factor Infertility.
van Dooremalen WTM, Verweij S.P., den Hartog J.E., Kebbi-Beghdadi C., Ouburg S., Greub G., Morré S.A., Ammerdorffer A., 2020/06/17. Microorganisms, 8 (6). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_569FD47D696C]
SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research.
Egli A., Battegay M., Büchler A.C., Bühlmann P., Calandra T., Eckert P., Furrer H., Greub G., Jakob S.M., Kaiser L. et al., 2020/06/16. pp. 1163-1167 dans Digital Personalized Health and Medicine, IOS Press.
[URN][DOI][WoS][Pmid][serval:BIB_DBFE87C40559]
Second-Trimester Miscarriage in a Pregnant Woman With SARS-CoV-2 Infection.
Baud D., Greub G., Favre G., Gengler C., Jaton K., Dubruc E., Pomar L., 2020/06/02. JAMA, 323 (21) pp. 2198-2200. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AC7104A0B702]
Evaluation of the BD Phoenix™ CPO Detect Test for the detection of carbapenemase producers.
Croxatto A., Coste A.T., Pillonel T., Bertelli C., Greub G., Prod'hom G., 2020/05. Clinical microbiology and infection, 26 (5) pp. 644.e9-644.e15. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_10B221FFC8D5]
Letter to the editor: SARS-CoV-2 detection by real-time RT-PCR.
Pillonel T., Scherz V., Jaton K., Greub G., Bertelli C., 2020/05. Euro surveillance, 25 (21). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E0264F85CE1E]
Eukaryotic Cell Permeabilisation to Identify New Putative Chlamydial Type III Secretion System Effectors Secreted within Host Cell Cytoplasm.
Kebbi-Beghdadi C., Pilloux L., Martin V., Greub G., 2020/03/03. Microorganisms, 8 (3). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F615C7195B0B]
Waddlia chondrophila and Male Infertility.
Baud D., Vulliemoz N., Zapata MVM, Greub G., Vouga M., Stojanov M., 2020/01/17. Microorganisms, 8 (1). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_06CAADE40661]
Trimethylamine-N-Oxide Postprandial Response in Plasma and Urine Is Lower After Fermented Compared to Non-Fermented Dairy Consumption in Healthy Adults.
Burton K.J., Krüger R., Scherz V., Münger L.H., Picone G., Vionnet N., Bertelli C., Greub G., Capozzi F., Vergères G., 2020/01/16. Nutrients, 12 (1) p. 234. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_772166ABEA47]
Diverse Stress-Inducing Treatments cause Distinct Aberrant Body Morphologies in the Chlamydia-Related Bacterium, Waddlia chondrophila.
Scherler A., Jacquier N., Kebbi-Beghdadi C., Greub G., 2020/01/09. Microorganisms, 8 (1). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_FFDE11682828]
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum.
Pillonel T., Tagini F., Bertelli C., Greub G., 2020/01/08. Nucleic acids research, 48 (D1) pp. D526-D534. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60D235C6962F]
CAPNOCYTOPHAGA CANIMORSUS ENDOPHTHALMITIS AFTER CATARACT SURGERY LINKED TO SALIVARY DOG-TO-HUMAN TRANSMISSION.
Thommen F., Opota O., Greub G., Jaton K., Guex-Crosier Y., Wolfensberger T.J., Matet A., 2020. Retinal cases & brief reports, 14 (2) pp. 183-186. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_79ECF7D1096A]
 
Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop.
Greub G., Palagi P.M., Dylus D., Egli A., Pillonel T., Rossen JWA, Seth-Smith HMB, Lebrand A., ESGMD Study Group, 2020. Microbes and infection, 22 (10) pp. 626-634. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_806389DCE25C]
Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units.
Magalhães B., Valot B., Abdelbary MMH, Prod'hom G., Greub G., Senn L., Blanc D.S., 2020. Frontiers in public health, 8 p. 3. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D83F2D6A3BC0]
 
Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples.
Marizzoni M., Gurry T., Provasi S., Greub G., Lopizzo N., Ribaldi F., Festari C., Mazzelli M., Mombelli E., Salvatore M. et al., 2020. Frontiers in microbiology, 11 p. 1262. Peer-reviewed.
[DOI][Pmid][serval:BIB_C28685E8F889]
Impact of Waddlia chondrophila infection on pregnancy in the mouse.
Baud D., Ammerdorffer A., Buffe Y., Vouga M., Greub G., Stojanov M., 2020/01. New microbes and new infections, 33 p. 100619. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_172D1E764896]
 
Symposium report: One Health meets sequencing.
Egli A., Koch D., Danuser J., Hendriksen R.S., Driesen S., Schmid D.C., Neher R., Mäusezahl M., Seth-Smith HMB, Bloemberg G. et al., 2020. Microbes and infection, 22 (1) pp. 1-7. Peer-reviewed.
[DOI][Pmid][serval:BIB_9E8E11A4C8CE]
Viral load of SARS-CoV-2 across patients and compared to other respiratory viruses.
Jacot D., Greub G., Jaton K., Opota O., 2020. Microbes and infection, 22 (10) pp. 617-621. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E9FEEDB7A5B4]
2019
A predation assay using amoebae to screen for virulence factors unearthed the first W. chondrophila inclusion membrane protein.
Kebbi-Beghdadi C., Pilloux L., Croxatto A., Tosetti N., Pillonel T., Greub G., 2019/12/20. Scientific reports, 9 (1) p. 19485. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6614BD6EEDF2]
Interactions Screenings Unearth Potential New Divisome Components in the Chlamydia-Related Bacterium, Waddlia chondrophila.
Bayramova F., Jacquier N., Greub G., 2019/11/26. Microorganisms, 7 (12). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7D196437BE35]
 
Phenotypic, biochemical and genetic analysis of KPC-41, a KPC-3 variant conferring resistance to ceftazidime-avibactam and exhibiting reduced carbapenemase activity.
Mueller L., Masseron A., Prod'Hom G., Galperine T., Greub G., Poirel L., Nordmann P., 2019/11/21. Antimicrobial agents and chemotherapy, 63 (12) pp. e01111-19. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1ED69763A009]
Evaluation of three consecutive versions of a commercial rapid PCR test to screen for methicillin-resistant Staphylococcus aureus.
Bulliard E., Grandbastien B., Senn L., Greub G., Blanc D.S., 2019/11. Clinical microbiology and infection, 25 (11) pp. 1430.e1-1430.e4. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EC5E10DF321A]
 
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 20 March 2019, Seattle, WA, USA.
Borel N., Horn M., Greub G., 2019/11. International journal of systematic and evolutionary microbiology, 69 (11) pp. 3654-3656. Peer-reviewed.
[DOI][Pmid][serval:BIB_EC08A672E940]
The rapid molecular test Xpert MTB/RIF ultra: towards improved tuberculosis diagnosis and rifampicin resistance detection.
Opota O., Mazza-Stalder J., Greub G., Jaton K., 2019/11. Clinical microbiology and infection, 25 (11) pp. 1370-1376. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AB65E37DF14D]
Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities.
Zakham F., Laurent S., Esteves Carreira A.L., Corbaz A., Bertelli C., Masserey E., Nicod L., Greub G., Jaton K., Mazza-Stalder J. et al., 2019/09. New microbes and new infections, 31 p. 100582. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_604EC4A7CD3F]
 
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 5 July 2018, Woudschoten, Zeist, The Netherlands.
Borel N., Greub G., 2019/08. International journal of systematic and evolutionary microbiology, 69 (8) pp. 2606-2608. Peer-reviewed.
[DOI][Pmid][serval:BIB_D076A6BCA06D]
 
Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
Tagini F., Aeby S., Bertelli C., Droz S., Casanova C., Prod'hom G., Jaton K., Greub G., 2019/06. International journal of systematic and evolutionary microbiology, 69 (6) pp. 1696-1704. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9F91FAF18341]
Whole-genome sequencing revealed independent emergence of vancomycin-resistant Enterococcus faecium causing sequential outbreaks over 3 years in a tertiary care hospital.
Abdelbary MHH, Senn L., Greub G., Chaillou G., Moulin E., Blanc D.S., 2019/06. European journal of clinical microbiology & infectious diseases, 38 (6) pp. 1163-1170. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C455D61F96F6]
 
Human miscarriage and infection in Tunisia: Role of Mycoplasma hominis and high Waddlia seroprevalence.
Smaoui M., Carole K., Sellami H., Kammoun S., Choura K., Maazoun L., Mestiri H., Aeby S., Louati D., Derbel M. et al., 2019/05/31. Journal of infection in developing countries, 13 (5) pp. 410-418. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DB998913DDCA]
Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum.
Zakham F., Pillonel T., Brunel A.S., Zambelli P.Y., Greub G., Croxatto A., Bertelli C., 2019/04. International journal of infectious diseases, 81 pp. 167-169. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DB839D64A53F]
Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship.
Pillonel T., Bertelli C., Aeby S., de Barsy M., Jacquier N., Kebbi-Beghdadi C., Mueller L., Vouga M., Greub G., 2019/04/01. Genome biology and evolution, 11 (4) pp. 1334-1344. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_396827229ADC]
Identification of new DNA-associated proteins from Waddlia chondrophila.
Barsy M., Herrgott L., Martin V., Pillonel T., Viollier P.H., Greub G., 2019/03/20. Scientific reports, 9 (1) p. 4885. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7EC1BBAAC2B7]
 
Diagnostic stewardship: are we using the right term?
Dyar O.J., Moran-Gilad J., Greub G., Pulcini C., ESGMD Executive Committee and the ESGAP Executive Committee, 2019/03. Clinical microbiology and infection, 25 (3) pp. 272-273. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8397F4F028F3]
Added Value of Xpert MTB/RIF Ultra for Diagnosis of Pulmonary Tuberculosis in a Low-Prevalence Setting.
Opota O., Zakham F., Mazza-Stalder J., Nicod L., Greub G., Jaton K., 2019/02. Journal of clinical microbiology, 57 (2). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7A47A167126E]
 
ESCMID/ESGMD postgraduate technical workshop on diagnostic microbiology.
Scherler A., Ardissone S., Moran-Gilad J., Greub G., 2019. Microbes and infection, 21 (8-9) pp. 343-352. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8D3ACAB68B40]
Indication of spatially random occurrence of <i>Chlamydia</i>-like organisms in <i>Bufo bufo</i> tadpoles from ponds located in the Geneva metropolitan area.
Vajana E., Widmer I., Rochat E., Duruz S., Selmoni O., Vuilleumier S., Aeby S., Greub G., Joost S., 2019/01. New microbes and new infections, 27 pp. 54-63. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D0448B8AE745]
Machine Learning Approach for Candida albicans Fluconazole Resistance Detection Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.
Delavy M., Cerutti L., Croxatto A., Prod'hom G., Sanglard D., Greub G., Coste A.T., 2019. Frontiers in microbiology, 10 p. 3000. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8EF5D09A167E]
Prevalence of <i>Anaplasma phagocytophilum</i> and <i>Coxiella burnetii</i> in <i>Ixodes ricinus</i> ticks in Switzerland: an underestimated epidemiologic risk.
Pilloux L., Baumgartner A., Jaton K., Lienhard R., Ackermann-Gäumann R., Beuret C., Greub G., 2019/01. New microbes and new infections, 27 pp. 22-26. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_6BE9445528C8]
 
Prevalence of Anaplasma phagocytophilum and Coxiella burnetii in Ixodes ricinus ticks in Switzerland: an underestimated epidemiologic risk.
Pilloux L., Baumgartner A., Jaton K., Lienhard R., Ackermann-Gäumann R., Beuret C., Greub G., 2019/01. New microbes and new infections, 27 pp. 22-26. Peer-reviewed.
[DOI][Pmid][serval:BIB_766343C2D4CA]
Review of the impact of MALDI-TOF MS in public health and hospital hygiene, 2018.
Rodríguez-Sánchez B., Cercenado E., Coste A.T., Greub G., 2019/01. Euro surveillance, 24 (4). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D38550346899]
2018
Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.
Egli A., Blanc D.S., Greub G., Keller P.M., Lazarevic V., Lebrand A., Leib S., Neher R.A., Perreten V., Ramette A. et al., 2018/12/03. Swiss medical weekly, 148 pp. w14693. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_185F2FAA4116]
 
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 7 September 2016, Oxford, UK.
Greub G., Bavoil P., 2018/11. International journal of systematic and evolutionary microbiology, 68 (11) pp. 3683-3684. Peer-reviewed.
[DOI][Pmid][serval:BIB_5426FEFE5887]
Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion.
Vidal S., Brandt B.W., Dettwiler M., Abril C., Bressan J., Greub G., Frey C.F., Perreten V., Rodriguez-Campos S., 2018/11. Heliyon, 4 (11) pp. e00915. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_99A288391043]
Male infertility: the intracellular bacterial hypothesis.
Stojanov M., Baud D., Greub G., Vulliemoz N., 2018/11. New microbes and new infections, 26 pp. 37-41. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D79FA9BEB917]
 
β-Klotho deficiency shifts the gut-liver bile acid axis and induces hepatic alterations in mice.
Somm E., Henry H., Bruce S.J., Bonnet N., Montandon S.A., Niederländer N.J., Messina A., Aeby S., Rosikiewicz M., Fajas L. et al., 2018/11/01. American journal of physiology. Endocrinology and metabolism, 315 (5) pp. E833-E847. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4784D51A916B]
 
Staphylocoques dorés producteurs de leucocidine de Panton-Valentine : notions en pratique clinique [Staphylococcus aureus producing Panton-Valentine leukocidin : notions in clinical practice]
Pérez S., Liaudet A., Favrat B., Cornuz J., Greub G., 2018/10/31. Revue medicale suisse, 14 (625) pp. 1946-1950. Peer-reviewed.
[Pmid][serval:BIB_B2FDAEE1B037]
Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida.
Cenci U., Qiu H., Pillonel T., Cardol P., Remacle C., Colleoni C., Kadouche D., Chabi M., Greub G., Bhattacharya D. et al., 2018/10/15. Scientific reports, 8 (1) p. 15243. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4A723C8DAA6B]
Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae.
Taylor-Brown A., Pillonel T., Greub G., Vaughan L., Nowak B., Polkinghorne A., 2018/10/01. Genome biology and evolution, 10 (10) pp. 2587-2595. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9BF0FCD108EA]
 
Infections à chlamydias : épidémiologie, pathogenèse, diagnostic et traitements [Chlamydial infections : epidemiology, pathogenesis, diagnosis and treatments]
Tagini F., Greub G., 2018/09/12. Revue medicale suisse, 14 (618) pp. 1620-1625. Peer-reviewed.
[Pmid][serval:BIB_502E47772566]
How to: identify non-tuberculous Mycobacterium species using MALDI-TOF mass spectrometry.
Alcaide F., Amlerová J., Bou G., Ceyssens P.J., Coll P., Corcoran D., Fangous M.S., González-Álvarez I., Gorton R., Greub G. et al., 2018/06. Clinical microbiology and infection, 24 (6) pp. 599-603. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6D3B229D6392]
Detection of Chlamydiaceae and Chlamydia-like organisms on the ocular surface of children and adults from a trachoma-endemic region.
Ghasemian E., Inic-Kanada A., Collingro A., Tagini F., Stein E., Alchalabi H., Schuerer N., Keše D., Babiker B.E., Borel N. et al., 2018/05/09. Scientific reports, 8 (1) p. 7432. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E6405A1C1146]
 
Genome sequencing and functional characterization of the non-pathogenic Klebsiella pneumoniae KpGe bacteria.
Lima W.C., Pillonel T., Bertelli C., Ifrid E., Greub G., Cosson P., 2018/05. Microbes and infection, 20 (5) pp. 293-301. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E3A61F3A6E26]
Resistome Analysis of a Carbapenemase (OXA-48)-Producing and Colistin-Resistant Klebsiella pneumoniae Strain.
Pillonel T., Nordmann P., Bertelli C., Prod' Hom G., Poirel L., Greub G., 2018/05. Antimicrobial agents and chemotherapy, 62 (5) pp. e00076-18 . Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5F1E5B63B916]
What is the true clinical relevance of Simkania negevensis and other emerging Chlamydiales members?
Vouga M., Kebbi-Beghdadi C., Liénard J., Baskin L., Baud D., Greub G., 2018/05. New microbes and new infections, 23 pp. 1-5. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_92241296F0A3]
Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin.
Staub E., Marti H., Biondi R., Levi A., Donati M., Leonard C.A., Ley S.D., Pillonel T., Greub G., Seth-Smith HMB et al., 2018/04/04. Scientific reports, 8 (1) p. 5660. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_33295F4DC436]
Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix<sup>®</sup> RT-PCR.
Wagner K., Springer B., Imkamp F., Opota O., Greub G., Keller P.M., 2018/04. International journal of medical microbiology, 308 (3) pp. 317-323. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D7A3ACFF6749]
 
Evaluating the use of whole-genome sequencing for outbreak investigations in the lack of closely related reference genome.
Abdelbary MMH, Senn L., Moulin E., Prod'hom G., Croxatto A., Greub G., Blanc D.S., 2018/04. Infection, genetics and evolution, 59 pp. 1-6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_871E9A950339]
 
Hepatitis E virus as a cause of acute hepatitis acquired in Switzerland.
Fraga M., Doerig C., Moulin H., Bihl F., Brunner F., Müllhaupt B., Ripellino P., Semela D., Stickel F., Terziroli Beretta-Piccoli B. et al., 2018/04. Liver international, 38 (4) pp. 619-626. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_989825B85C8C]
Chlamydiae in febrile children with respiratory tract symptoms and age-matched controls, Ghana.
Bühl H., Eibach D., Nagel M., Greub G., Borel N., Sarpong N., Rettig T., Pesch T., Aeby S., Klöckner A. et al., 2018/03. New microbes and new infections, 22 pp. 44-48. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_28BBF4635E85]
 
Klebsiella pneumoniae co-producing KPC and RmtG, finally targeting Switzerland.
Mancini S., Poirel L., Corthesy M., Greub G., Nordmann P., 2018/02. Diagnostic microbiology and infectious disease, 90 (2) pp. 151-152. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_52F78DD0D6F2]
A historical legacy of antibiotic utilization on bacterial seed banks in sediments.
Madueño L., Paul C., Junier T., Bayrychenko Z., Filippidou S., Beck K., Greub G., Bürgmann H., Junier P., 2018. PeerJ, 6 pp. e4197. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABD7157C5495]
Antibodies to <i>Chlamydia trachomatis</i> and reproductive health issues in women with SLE: a case-control study.
Santos A., Greub G., Aeby S., Wunder D., Pantaleo G., Ribi C., 2018. Lupus science & medicine, 5 (1) pp. e000293. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_B997988DA92E]
 
Chlamydia, rickettsia and other intracellular bacteria.
Greub G., 2018. Microbes and infection, 20 (7-8) p. 391. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A0FE69553032]
Chlamydiales, Anaplasma and Bartonella: persistence and immune escape of intracellular bacteria.
Scherler A., Jacquier N., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 416-423. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A1F6F78D5BB4]
Culture-independent genome sequencing of Coxiella burnetii from a native heart valve of a Tunisian patient with severe infective endocarditis.
Delaloye J., Pillonel T., Smaoui M., Znazen A., Abid L., Greub G., 2018/01. New microbes and new infections, 21 pp. 31-35. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_CFE55C2C2815]
Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.
Seth-Smith HMB, Imkamp F., Tagini F., Cuénod A., Hömke R., Jahn K., Tschacher A., Grendelmeier P., Bättig V., Erb S. et al., 2018. Frontiers in microbiology, 9 p. 3184. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6CCF717EE6E2]
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.
Paul C., Bayrychenko Z., Junier T., Filippidou S., Beck K., Bueche M., Greub G., Bürgmann H., Junier P., 2018. PeerJ, 6 pp. e4989. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_408A948312E3]
Distinct Genomic Features Characterize Two Clades of <i>Corynebacterium diphtheriae</i>: Proposal of <i>Corynebacterium diphtheriae</i> Subsp. <i>diphtheriae</i> Subsp. nov. and <i>Corynebacterium diphtheriae</i> Subsp. <i>lausannense</i> Subsp. nov.
Tagini F., Pillonel T., Croxatto A., Bertelli C., Koutsokera A., Lovis A., Greub G., 2018. Frontiers in microbiology, 9 p. 1743. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0A00CF043EE5]
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.
Pillonel T., Bertelli C., Greub G., 2018. Frontiers in microbiology, 9 p. 79. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AC985878259]
 
Epidemiology of sexually transmitted infections among female sex workers in Switzerland : a local exploratory cross-sectional study
Bondolfi C., Vu F., Cavassini M., D'Acremont V., Greub G., Jaton K., Masserey E., Pongelli S., Bouche L., Ngarambe C. et al., 2018., 1st World Congress on Migration, Ethnicity, Race and Health, Edinburgh, 17-19 May 2018 p. 158 dans European Journal of Public Health.
[DOI][WoS][serval:BIB_8266DFADE297]
ESCCAR international congress on Rickettsiae and other intracellular bacteria.
Fournier P.E., Kebbi-Beghdadi C., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 392-400. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F618D07B61BB]
Insight in the biology of Chlamydia-related bacteria.
Bayramova F., Jacquier N., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 432-440. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_759681F06FF4]
Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms.
Bertelli C., Courtois S., Rosikiewicz M., Piriou P., Aeby S., Robert S., Loret J.F., Greub G., 2018. Frontiers in microbiology, 9 p. 2520. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_50405A9AFBDC]
 
Tick-borne pathogen detection: what's new?
Cabezas-Cruz A., Vayssier-Taussat M., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 441-444. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7A0D008CA471]
 
Waddlia chondrophila, a Chlamydia-related bacterium, has a negative impact on human spermatozoa.
Baud D., Vulliemoz N., Ammerdorffer A., Gyger J., Greub G., Castella V., Stojanov M., 2018/01/01. Human reproduction, 33 (1) pp. 3-10. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2050329E571A]
2017
Impact of HPV vaccination with Gardasil® in Switzerland.
Jacot-Guillarmod M., Pasquier J., Greub G., Bongiovanni M., Achtari C., Sahli R., 2017/12/22. BMC infectious diseases, 17 (1) p. 790. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B488477F8671]
Neglected zoonotic agents in cattle abortion: tackling the difficult to grow bacteria.
Vidal S., Kegler K., Greub G., Aeby S., Borel N., Dagleish M.P., Posthaus H., Perreten V., Rodriguez-Campos S., 2017/12/02. BMC veterinary research, 13 (1) p. 373. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_023D530FFE1E]
Blood lactose after dairy product intake in healthy men.
Pimentel G., Burton K.J., Rosikiewicz M., Freiburghaus C., von Ah U., Münger L.H., Pralong F.P., Vionnet N., Greub G., Badertscher R. et al., 2017/12. The British journal of nutrition, 118 (12) pp. 1070-1077. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_45226C6B180A]
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