Nicolas Salamin

Publications | Mémoires et thèses

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156 publications

Sous presse | 2025 | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 |
Sous presse
 
Exploring the Macroevolutionary Signature of Asymmetric Inheritance at Speciation.
Gaboriau T., Tobias J.A., Silvestro D., Salamin N. Systematic biology. Peer-reviewed.
[DOI][Pmid][serval:BIB_04FF91A74ECB]
2025
 
N-acetylated sugars in clownfish and damselfish skin mucus as messengers involved in chemical recognition by anemone host.
Heim S., Teav T., Cortesi F., Gallart-Ayala H., Ivanisevic J., Salamin N., 2025/01/15. Scientific reports, 15 (1) p. 2048. Peer-reviewed.
[DOI][Pmid][serval:BIB_9F210F2925EB]
2024
Detecting diversifying selection for a trait from within and between-species genotypes and phenotypes.
Latrille T., Bastian M., Gaboriau T., Salamin N., 2024/12/02. Journal of evolutionary biology, 37 (12) pp. 1538-1550. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0EF18EA23CFD]
 
Estimating the proportion of beneficial mutations that are not adaptive in mammals.
Latrille T., Joseph J., Hartasánchez D.A., Salamin N., 2024/12. PLoS genetics, 20 (12) pp. e1011536. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F3489EE5CD45]
Toward a Semi-Supervised Learning Approach to Phylogenetic Estimation.
Silvestro D., Latrille T., Salamin N., 2024/10/30. Systematic biology, 73 (5) pp. 789-806. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_15E89A0A809D]
Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish.
Schmid S., Bachmann Salvy M., Garcia Jimenez A., Bertrand JAM, Cortesi F., Heim S., Huyghe F., Litsios G., Marcionetti A., O'Donnell J.L. et al., 2024/07. Molecular ecology, 33 (14) pp. e17436. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_62B3CDA8C5C0]
Recurrent gene flow events occurred during the diversification of clownfishes of the skunk complex.
Marcionetti A., Bertrand JAM, Cortesi F., Donati GFA, Heim S., Huyghe F., Kochzius M., Pellissier L., Salamin N., 2024/06. Molecular ecology, 33 (11) pp. e17347. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6E177F953F6F]
 
Hyper-Cryptic radiation of a tropical montane plant lineage.
Olivares I., Tusso S., José Sanín M., de La Harpe M., Loiseau O., Rolland J., Salamin N., Kessler M., Shimizu K.K., Paris M., 2024/01. Molecular phylogenetics and evolution, 190 p. 107954. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_33075489A124]
2023
 
Conceptual and empirical bridges between micro- and macroevolution.
Rolland J., Henao-Diaz L.F., Doebeli M., Germain R., Harmon L.J., Knowles L.L., Liow L.H., Mank J.E., Machac A., Otto S.P. et al., 2023/08. Nature ecology & evolution, 7 (8) pp. 1181-1193. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8AB15E512733]
Insights into the Genomics of Clownfish Adaptive Radiation: The Genomic Substrate of the Diversification.
Marcionetti A., Salamin N., 2023/07/03. Genome biology and evolution, 15 (7). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_35025EC7D7BF]
Divergence in metabolomic profile in clownfish and damselfish skin mucus
Heim S., Teav T., Gallart-Ayala H., Ivanisevic J., Salamin N., 2023/02/07. Frontiers in Ecology and Evolution, 11.
[URN][DOI][WoS][serval:BIB_6E38BFCA1196]
2022
 
Geogenomics of montane palms points to Miocene-Pliocene Andean segmentation related to strike-slip tectonics.
Sanín María José, Mejía-Franco Fabián Gregorio, Paris Margot, Valencia-Montoya Wendy A., Salamin Nicolas, Kessler Michael, Olivares Ingrid, Jaramillo Juan Sebastián, Cardona Agustín, 2022/09. Journal of Biogeography, 49 (9) pp. 1711-1725.
[DOI][WoS][serval:BIB_EC27D475E4DD]
2021
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae).
Zhang Q., Ree R.H., Salamin N., Xing Y., Silvestro D., 2021/12/16. Systematic biology, 71 (1) pp. 242-258. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C1BA117F09FD]
 
Evolution of life cycles and reproductive traits: Insights from the brown algae.
Heesch S., Serrano-Serrano M., Barrera-Redondo J., Luthringer R., Peters A.F., Destombe C., Cock J.M., Valero M., Roze D., Salamin N. et al., 2021/07. Journal of evolutionary biology, 34 (7) pp. 992-1009. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9FC279E4C2BC]
Large-scale whole-genome resequencing unravels the domestication history of Cannabis sativa.
Ren G., Zhang X., Li Y., Ridout K., Serrano-Serrano M.L., Yang Y., Liu A., Ravikanth G., Nawaz M.A., Mumtaz A.S. et al., 2021/07. Science Advances, 7 (29) pp. eabg2286. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_961363B69EFE]
A Cautionary Note on the Use of Genotype Callers in Phylogenomics.
Duchen P., Salamin N., 2021/06/16. Systematic biology, 70 (4) pp. 844-854. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BE78FE659A7E]
 
Thyroid hormones regulate the formation and environmental plasticity of white bars in clownfishes.
Salis P., Roux N., Huang D., Marcionetti A., Mouginot P., Reynaud M., Salles O., Salamin N., Pujol B., Parichy D.M. et al., 2021/06/08. Proceedings of the National Academy of Sciences of the United States of America, 118 (23). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3175D86F9AC6]
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes.
Ogutcen Ezgi, Christe Camille, Nishii Kanae, Salamin Nicolas, Möller Michael, Perret Mathieu, 2021/04. Molecular phylogenetics and evolution, 157 p. 107068. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_0102B1359D1E]
On the Effect of Asymmetrical Trait Inheritance on Models of Trait Evolution.
Duchen P., Alfaro M.L., Rolland J., Salamin N., Silvestro D., 2021/02/10. Systematic biology, 70 (2) pp. 376-388. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FDE71488549F]
2020
 
Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation.
De La Harpe M., Paris M., Hess J., Barfuss MHJ, Serrano-Serrano M.L., Ghatak A., Chaturvedi P., Weckwerth W., Till W., Salamin N. et al., 2020/12. Plant, cell & environment, 43 (12) pp. 2987-3001. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AF228E1EBF7B]
Rapid climate change results in long-lasting spatial homogenization of phylogenetic diversity
Saladin Bianca, Pellissier Loïc, Graham Catherine H., Nobis Michael P., Salamin Nicolas, Zimmermann Niklaus E., 2020/12. Nature Communications, 11 (1). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1D26146BBFF5]
 
A multi‐platform package for the analysis of intra‐ and interspecific trait evolution
Gaboriau Théo, Mendes Fábio K., Joly Simon, Silvestro Daniele, Salamin Nicolas, 2020/07/30. Methods in Ecology and Evolution.
[DOI][serval:BIB_C6610E18F7CB]
 
Prototypic SNARE Proteins Are Encoded in the Genomes of Heimdallarchaeota, Potentially Bridging the Gap between the Prokaryotes and Eukaryotes.
Neveu E., Khalifeh D., Salamin N., Fasshauer D., 2020/07/06. Current biology, 30 (13) pp. 2468-2480.e5. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_205A688DF51E]
Population Genetic Structure and Demographic History of Primula fasciculata in Southwest China
Ren Guangpeng, Mateo Rubén G., Conti Elena, Salamin Nicolas, 2020/07/02. Frontiers in Plant Science, 11. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FC985681735]
 
Evolution of a supergene that regulates a trans-species social polymorphism
Yan Zheng, Martin Simon H., Gotzek Dietrich, Arsenault Samuel V., Duchen Pablo, Helleu Quentin, Riba-Grognuz Oksana, Hunt Brendan G., Salamin Nicolas, Shoemaker DeWayne et al., 2020/02. Nature Ecology & Evolution, 4 (2) pp. 240-249.
[DOI][WoS][Pmid][serval:BIB_04919BBD5748]
Evolution of a supergene that regulates a trans-species social polymorphism.
Yan Z., Martin S.H., Gotzek D., Arsenault S.V., Duchen P., Helleu Q., Riba-Grognuz O., Hunt B.G., Salamin N., Shoemaker D. et al., 2020/02. Nature Ecology & Evolution, 4 (2) pp. 240-249. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C5FD726043D1]
Linking micro and macroevolution in the presence of migration
Duchen P., Hautphenne S., Lehmann L., Salamin N., 2020/02. Journal of Theoretical Biology, 486 p. 110087.
[URN][DOI][Pmid][serval:BIB_DE12ED21AFD4]
2019
Duplication history and molecular evolution of the rbcS multigene family in angiosperms.
Yamada K., Davydov I.I., Besnard G., Salamin N., 2019/11/18. Journal of experimental botany, 70 (21) pp. 6127-6139. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4F2C509DEDA2]
Biogeography and ecological diversification of a mayfly clade in New Guinea
Cozzarolo Camille-Sophie, Balke Michael, Buerki Sven, Arrigo Nils, Pitteloud Camille, Gueuning Morgan, Salamin Nicolas, Sartori Michel, Alvarez Nadir, 2019/07/03. Frontiers in Ecology and Evolution. Peer-reviewed.
[URN][DOI][serval:BIB_003F3950383D]
Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection.
Davydov I.I., Salamin N., Robinson-Rechavi M., 2019/06/01. Molecular biology and evolution, 36 (6) pp. 1316-1332. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FF45CD1C1260]
 
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish.
Salis P., Lorin T., Lewis V., Rey C., Marcionetti A., Escande M.L., Roux N., Besseau L., Salamin N., Sémon M. et al., 2019/05. Pigment cell & melanoma research, 32 (3) pp. 391-402. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_70242B18941A]
 
Simultaneous Bayesian inference of phylogeny and molecular coevolution.
Meyer X., Dib L., Silvestro D., Salamin N., 2019/03/12. Proceedings of the National Academy of Sciences of the United States of America, 116 (11) pp. 5027-5036. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA4DD85D4A30]
Insights into the Genomics of Clownfish Adaptive Radiation: Genetic Basis of the Mutualism with Sea Anemones.
Marcionetti A., Rossier V., Roux N., Salis P., Laudet V., Salamin N., 2019/03/01. Genome biology and evolution, 11 (3) pp. 869-882. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_43067C377BBE]
Environment and evolutionary history shape phylogenetic turnover in European tetrapods.
Saladin B., Thuiller W., Graham C.H., Lavergne S., Maiorano L., Salamin N., Zimmermann N.E., 2019/01/16. Nature communications, 10 (1) p. 249. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B3A2A15C22CE]
CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates.
Meyer X., Dib L., Salamin N., 2019. Nucleic Acids Research, 47 (D1) pp. D50-D54. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C6FD42281624]
Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors.
Silvestro D., Tejedor M.F., Serrano-Serrano M.L., Loiseau O., Rossier V., Rolland J., Zizka A., Höhna S., Antonelli A., Salamin N., 2019. Systematic Biology, 68 (1) pp. 78-92. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2044A2BD7D99]
Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae.
Loiseau O., Olivares I., Paris M., de La Harpe M., Weigand A., Koubínová D., Rolland J., Bacon C.D., Balslev H., Borchsenius F. et al., 2019. Frontiers in plant science, 10 p. 864. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8B76DD057C97]
2018
Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.
Dib L., Salamin N., Gfeller D., 2018/05. PLoS computational biology, 14 (5) pp. e1006188. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C9940E7E30A3]
 
The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.
Rolland J., Silvestro D., Schluter D., Guisan A., Broennimann O., Salamin N., 2018/03. Nature ecology & evolution, 2 (3) pp. 459-464. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C415C45047B]
First draft genome of an iconic clownfish species (Amphiprion frenatus).
Marcionetti A., Rossier V., Bertrand JAM, Litsios G., Salamin N., 2018. Molecular Ecology Resources, 18 (5) pp. 1092-1101. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DAA95EEF7AB3]
 
Howling from the past: historical phylogeography and diversity losses in European grey wolves.
Dufresnes C., Miquel C., Remollino N., Biollaz F., Salamin N., Taberlet P., Fumagalli L., 2018. Proceedings of the Royal Society B. Biological Sciences, 285 (1884) p. 20181148. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_78512079E9C4]
Improving spatial predictions of taxonomic, functional and phylogenetic diversity
D'Amen M., Mateo R.G., Pottier J., Thuiller W., Maiorano L., Pellissier L., Ndiribe C., Salamin N., Guisan A., 2018. Journal of Ecology, 106 (1) pp. 76-86. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_574B39D33520]
Publisher Correction: The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.
Rolland J., Silvestro D., Schluter D., Guisan A., Broenniman O., Salamin N., 2018. Nature Ecology & Evolution, 2 (3) p. 578. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5A2DADC0C319]
Species divergence and maintenance of species cohesion of three closely related Primula species in the Qinghai-Tibet Plateau
Ren G., Mateo R.G., Guisan A., Conti E., Salamin N., 2018. Journal of Biogeography, 45 (11) pp. 2495-2507. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_38EC30FD92E5]
2017
Selection on the Major Color Gene Melanocortin-1-Receptor Shaped the Evolution of the Melanocortin System Genes.
Dib L., San-Jose L.M., Ducrest A.L., Salamin N., Roulin A., 2017/12/05. International journal of molecular sciences, 18 (12) pp. NA. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_05CA0CC7D793]
 
High Rate of Protein Coding Sequence Evolution and Species Diversification in the Lycaenids
Pellissier Loïc, Kostikova Anna, Litsios Glenn, Salamin Nicolas, Alvarez Nadir, 2017/08/23. Frontiers in Ecology and Evolution, 5.
[DOI][serval:BIB_786E9C9B2A12]
One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions.
Mueller L., Bertelli C., Pillonel T., Salamin N., Greub G., 2017/06/01. Genome biology and evolution, 9 (6) pp. 1432-1449. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BF5DFD01F732]
 
Molecular ecology studies of species radiations: current research gaps, opportunities and challenges.
de la Harpe M., Paris M., Karger D.N., Rolland J., Kessler M., Salamin N., Lexer C., 2017/05. Molecular ecology, 26 (10) pp. 2608-2622. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_795ED44FB832]
Accelerating Bayesian inference for evolutionary biology models.
Meyer X., Chopard B., Salamin N., 2017. Bioinformatics, 33 (5) pp. 669-676. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_512001709D42]
Bayesian estimation of multiple clade competition from fossil data
Silvestro D., Pires M.M., Quental T.B., Salamin N., 2017. Evolutionary Ecology Research, 18 pp. 41-59. Peer-reviewed.
[URN][WoS][serval:BIB_9717D8A0D667]
 
ecospat: an R package to support spatial analyses and modeling of species niches and distributions
Di Cola V., Broennimann O., Petitpierre B., Breiner F.T., D'Amen M., Randin C., Engler R., Pottier J., Pio D., Dubuis A. et al., 2017. Ecography, 40 (6) pp. 774-787. Peer-reviewed.
[DOI][WoS][serval:BIB_7F27FB415DA8]
Fossils matter: improved estimates of divergence times in Pinus reveal older diversification.
Saladin B., Leslie A.B., Wüest R.O., Litsios G., Conti E., Salamin N., Zimmermann N.E., 2017. BMC Evolutionary Biology, 17 (1) p. 95. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_055928EC2337]
Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing.
Ren G., Mateo R.G., Liu J., Suchan T., Alvarez N., Guisan A., Conti E., Salamin N., 2017. The New Phytologist, 213 (3) pp. 1500-1512.
[URN][DOI][WoS][Pmid][serval:BIB_5361B0AEFA93]
 
Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae.
Serrano-Serrano M.L., Rolland J., Clark J.L., Salamin N., Perret M., 2017. Proceedings of the Royal Society B. Biological sciences, 284 (1852) p. 2016281. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9A6747041829]
No evidence for the radiation time lag model after whole genome duplications in Teleostei.
Laurent S., Salamin N., Robinson-Rechavi M., 2017. PLoS One, 12 (4) pp. e0176384. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6A5C276B250D]
Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae).
Serrano-Serrano M.L., Marcionetti A., Perret M., Salamin N., 2017. Applications in Plant Sciences, 5 (4) p. 0. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B56B42C99A39]
2016
 
Interspecific correlation between red blood cell mitochondrial ROS production, cardiolipin content and longevity in birds.
Delhaye J., Salamin N., Roulin A., Criscuolo F., Bize P., Christe P., 2016/12. Age, 38 (5-6) pp. 433-443. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E57FF1F50B45]
 
Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian Approach.
Kostikova A., Silvestro D., Pearman P.B., Salamin N., 2016/05. Systematic biology, 65 (3) pp. 417-431. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8BEFF5A5A573]
 
Different rates of defense evolution and niche preferences in clonal and nonclonal milkweeds (Asclepias spp.).
Pellissier L., Litsios G., Fishbein M., Salamin N., Agrawal A.A., Rasmann S., 2016. New Phytologist, 209 (3) pp. 1230-1239.
[DOI][WoS][Pmid][serval:BIB_CE40C3E3B743]
Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data.
Silvestro D., Zizka A., Bacon C.D., Cascales-Miñana B., Salamin N., Antonelli A., 2016. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371 (1691) p. 20150225.
[URN][DOI][WoS][Pmid][serval:BIB_EFCCECA146BB]
Molecular evolutionary rates are not correlated with temperature and latitude in Squamata: an exception to the metabolic theory of ecology?
Rolland J., Loiseau O., Romiguier J., Salamin N., 2016. BMC Evolutionary Biology, 16 p. 95. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_304D2DE39E55]
 
Niche width impacts vertebrate diversification
Rolland J., Salamin N., 2016. Global Ecology and Biogeography, 25 (10) pp. 1252-1263. Peer-reviewed.
[DOI][WoS][serval:BIB_FB33A31CAB33]
 
Resprouter fraction in Cape Restionaceae assemblages varies with climate and soil type
Wuest R.O., Litsios G., Forest F., Lexer C., Linder H.P., Salamin N., Zimmermann N.E., Pearman P.B., 2016. Functional Ecology, 30 (9) pp. 1583-1592.
[DOI][WoS][serval:BIB_C5D65F55E1BA]
State aggregation for fast likelihood computations in molecular evolution.
Davydov I.I., Robinson-Rechavi M., Salamin N., 2016. Bioinformatics, 33 pp. 354-362. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_54224013033C]
 
The simultaneous inducibility of phytochemicals related to plant direct and indirect defences against herbivores is stronger at low elevation
Pellissier L., Moreira X., Danner H., Serrano M., Salamin N., van Dam N.M., Rasmann S., 2016. Journal of Ecology, 104 (4) pp. 1116-1125.
[DOI][WoS][serval:BIB_B81F9E855E7C]
Why are some species older than others? A large-scale study of vertebrates.
Cattin L., Schuerch J., Salamin N., Dubey S., 2016. BMC Evolutionary Biology, 16 (1) p. 90. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2203EF8F0317]
2015
 
Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions?
Pirie M.D., Litsios G., Bellstedt D.U., Salamin N., Kissling J., 2015. Biology Letters, 11 (6) p. 20150086.
[DOI][WoS][Pmid][serval:BIB_16AAB5C71C77]
Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree.
Dib L., Meyer X., Artimo P., Ioannidis V., Stockinger H., Salamin N., 2015. BMC Bioinformatics, 16 p. 394.
[URN][DOI][WoS][Pmid][serval:BIB_1D409FE82F01]
Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae.
Serrano-Serrano M.L., Perret M., Guignard M., Chautems A., Silvestro D., Salamin N., 2015. BMC Evolutionary Biology, 15 p. 247.
[URN][DOI][WoS][Pmid][serval:BIB_ED9C4BA24091]
Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions.
Laurent S., Robinson-Rechavi M., Salamin N., 2015. BMC Evolutionary Biology, 15 p. 157. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_01FF6A3D8DC9]
How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared.
Witsenburg F., Clément L., López-Baucells A., Palmeirim J., Pavlinić I., Scaravelli D., ?evčík M. , Dutoit L., Salamin N., Goudet J. et al., 2015. Molecular Ecology, 24 (4) pp. 926-940. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FE6B0F222C7D]
 
Measurement Errors Should Always Be Incorporated in Phylogenetic Comparative Analysis
Silvestro D., Kostikova A., Litsios G., Pearman P.B., Salamin N., 2015. Methods in Ecology and Evolution, 6 (3) pp. 340-346.
[DOI][WoS][serval:BIB_A1850873FC48]
Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau.
Ren G., Conti E., Salamin N., 2015. BMC Evolutionary Biology, 15 p. 161.
[URN][DOI][WoS][Pmid][serval:BIB_608DDFF3399D]
Taxogenomics of the order Chlamydiales.
Pillonel T., Bertelli C., Salamin N., Greub G., 2015. International Journal of Systematic and Evolutionary Microbiology, 65 (Pt 4) pp. 1381-1393. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AD041EB6E92F]
 
The role of clade competition in the diversification of North American canids.
Silvestro D., Antonelli A., Salamin N., Quental T.B., 2015. Proceedings of the National Academy of Sciences of the United States of America, 112 (28) pp. 8684-8689.
[DOI][WoS][Pmid][serval:BIB_EC2A94F93014]
2014
A generalized mechanistic codon model.
Zaheri M., Dib L., Salamin N., 2014. Molecular Biology and Evolution, 31 (9) pp. 2528-2541.
[URN][DOI][WoS][Pmid][serval:BIB_5ADE075B1CFC]
Bayesian estimation of speciation and extinction from incomplete fossil occurrence data.
Silvestro D., Schnitzler J., Liow L.H., Antonelli A., Salamin N., 2014. Systematic Biology, 63 (3) pp. 349-367.
[URN][DOI][WoS][Pmid][serval:BIB_B79937CF9331]
 
Climate change effects on animal and plant phylogenetic diversity in southern Africa
Pio D.V., Engler R., Linder H.P., Monadjem A., Cotterill F.P.D., Taylor P.J., Schoeman M.C., Price B.W., Villet M.H., Eick G. et al., 2014. Global Change Biology, 20 (5) pp. 1538-1549.
[DOI][WoS][serval:BIB_0B94E2ED044F]
Disentangling the effects of key innovations on the diversification of Bromelioideae (bromeliaceae).
Silvestro D., Zizka G., Schulte K., 2014. Evolution, 68 (1) pp. 163-175.
[URN][DOI][WoS][Pmid][serval:BIB_0949331C3383]
Effects of a fire response trait on diversification in replicated radiations.
Litsios G., Wüest R.O., Kostikova A., Forest F., Lexer C., Linder H.P., Pearman P.B., Zimmermann N.E., Salamin N., 2014. Evolution, 68 (2) pp. 453-465. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B09E8E6EABC8]
Evolutionary footprint of coevolving positions in genes.
Dib L., Silvestro D., Salamin N., 2014. Bioinformatics, 30 (9) pp. 1241-1249.
[URN][DOI][WoS][Pmid][serval:BIB_EA95317606C6]
 
Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae).
Lexer C., Wüest R.O., Mangili S., Heuertz M., Stölting K.N., Pearman P.B., Forest F., Salamin N., Zimmermann N.E., Bossolini E., 2014. Molecular Ecology, 23 (17) pp. 4373-4386.
[DOI][WoS][Pmid][serval:BIB_1F5F599B7DE0]
 
Host specialist clownfishes are environmental niche generalists.
Litsios G., Kostikova A., Salamin N., 2014. Proceedings of the Royal Society. B Biological Sciences, 281 (1795) pp. 20133220-20133220.
[DOI][WoS][Pmid][serval:BIB_25F05E750D6C]
Hybridisation and diversification in the adaptive radiation of clownfishes.
Litsios G., Salamin N., 2014. BMC Evolutionary Biology, 14 (1) p. 245.
[URN][DOI][WoS][Pmid][serval:BIB_250CBA90602A]
Molecular dating, evolutionary rates, and the age of the grasses.
Christin P.A., Spriggs E., Osborne C.P., Strömberg C.A., Salamin N., Edwards E.J., 2014. Systematic Biology, 63 (2) pp. 153-165.
[URN][DOI][WoS][Pmid][serval:BIB_E98BD328D085]
Optimization strategies for fast detection of positive selection on phylogenetic trees.
Valle M., Schabauer H., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Salamin N., 2014. Bioinformatics, 30 (8) pp. 1129-1137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EE03C80A1584]
Plant functional and phylogenetic turnover correlate with climate and land use in the Western Swiss Alps
Ndiribe C., Pellissier L., Dubuis A., Vittoz P., Salamin N., Guisan A., 2014. Journal of Plant Ecology, 7 (5) pp. 439-450. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_A387FB5AA077]
 
PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data
Silvestro D., Salamin N., Schnitzler J., 2014. Methods in Ecology and Evolution, 5 (10) pp. 1126-1131.
[DOI][WoS][serval:BIB_7663F60C1DF8]
 
Scale-dependent adaptive evolution and morphological convergence to climatic niche in Californian eriogonoids (Polygonaceae)
Kostikova A., Litsios G., Burgy S., Milani L., Pearman P.B., Salamin N., 2014. Journal of Biogeography, 41 (7) pp. 1326-1337.
[DOI][WoS][serval:BIB_7D3753461B63]
Selectome update: quality control and computational improvements to a database of positive selection.
Moretti S., Laurenczy B., Gharib W.H., Castella B., Kuzniar A., Schabauer H., Studer R.A., Valle M., Salamin N., Stockinger H. et al., 2014. Nucleic Acids Research, 42 (1) pp. D917-D921. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BD16E97A0D18]
 
Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps.
Pellissier L., Niculita-Hirzel Hélène, Dubuis A., Pagni M., Guex N., Ndiribe C., Salamin N., Xenarios I., Goudet J., Sanders I.R. et al., 2014. Molecular Ecology, 23 (17) pp. 4274-4290. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_32F6B5977780]
 
The radiation of the clownfishes has two geographical replicates
Litsios G, Pearman P.B., Lanterbecq D., Tolou N., Salamin N., 2014. Journal of Biogeography, 41 (11) pp. 2140-2149.
[URN][DOI][WoS][serval:BIB_53AF29BEAC87]
 
The role of climatic tolerances and seed traits in reduced extinction rates of temperate polygonaceae.
Kostikova A., Salamin N., Pearman P.B., 2014. Evolution, 68 (7) pp. 1856-1870. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_847BD92FD651]
2013
Combining food web and species distribution models for improved community projections
Pellissier Loïc, Rohr Rudolf P., Ndiribe Charlotte, Pradervand Jean-Nicolas, Salamin Nicolas, Guisan Antoine, Wisz Mary, 2013/11. Ecology and Evolution, 3 (13) pp. 4572-4583. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_10F46C74CE70]
 
'Next generation' biogeography: towards understanding the drivers of species diversification and persistence
Lexer C., Mangili S., Bossolini E., Forest F., Stölting K.N., Pearman P.B., Rimmermann N.E., Salamin N., 2013. Journal of Biogeography, 40 (6) pp. 1013-1022.
[DOI][WoS][serval:BIB_2165B5408C88]
Convergent evolution of floral signals underlies the success of Neotropical orchids.
Papadopulos A.S., Powell M.P., Pupulin F., Warner J., Hawkins J.A., Salamin N., Chittka L., Williams N.H., Whitten W.M., Loader D. et al., 2013. Proceedings of the Royal Society B Biological Sciences, 280 (1765) p. 20130960.
[URN][DOI][WoS][Pmid][serval:BIB_4FD01F789238]
Flowering date of taxonomic families predicts phenological sensitivity to temperature: Implications for forecasting the effects of climate change on unstudied taxa.
Mazer S.J., Travers S.E., Cook B.I., Davies T.J., Bolmgren K., Kraft N.J., Salamin N., Inouye D.W., 2013. American Journal of Botany, 100 (7) pp. 1381-1397.
[URN][DOI][WoS][Pmid][serval:BIB_7ED6B48DC412]
 
Linking life-history traits, ecology, and niche breadth evolution in north american eriogonoids (polygonaceae).
Kostikova A., Litsios G., Salamin N., Pearman P.B., 2013. American Naturalist, 182 (6) pp. 760-774.
[DOI][WoS][Pmid][serval:BIB_65C0FED3D73D]
Phylogenetic conservatism in plant phenology
Davies T.J., Wolkovich E.M., Kraft N.J.B., Salamin N., Allen J.M., Ault T.R., Betancourt J.L., Bolmgren K., Cleland E.E., Cook B.I. et al., 2013. Journal of Ecology, 101 (6) pp. 1520-1530.
[URN][DOI][WoS][serval:BIB_1EDDC30023B4]
Phylogenetic plant community structure along elevation is lineage specific
Ndiribe C., Pellissier L., Antonelli S., Dubuis A., Pottier J., Vittoz P., Guisan A., Salamin N., 2013. Ecology and Evolution, 3 (15) pp. 4925-4939. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_38D3F678A0B2]
Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences
Perret M., Chautems A., De Araujo A.O., Salamin N., 2013. Botanical Journal of the Linnean Society, 171 (1) pp. 61-79.
[URN][DOI][WoS][serval:BIB_897F4ABF29E7]
 
Turnover of plant lineages shapes herbivore phylogenetic beta diversity along ecological gradients.
Pellissier L., Ndiribe C., Dubuis A., Pradervand J.N., Salamin N., Guisan A., Rasmann S., 2013. Ecology Letters, 16 (5) pp. 600-608.
[DOI][WoS][Pmid][serval:BIB_63AB6B6ABFAD]
 
Understanding the concepts of community phylogenetics
Ndiribe C., Salamin N., Guisan A., 2013. Evolutionary Ecology Reserach, 15 (8) pp. 853-868. Peer-reviewed.
[WoS][serval:BIB_49BCCD5D7637]
2012
 
Effect of genetic convergence on phylogenetic inference.
Christin P.A., Besnard G., Edwards E.J., Salamin N., 2012. Molecular Phylogenetics and Evolution, 62 (3) pp. 921-927. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_785255F7032D]
Effects of phylogenetic signal on ancestral state reconstruction.
Litsios G., Salamin N., 2012. Systematic Biology, 61 (3) pp. 533-538. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6A6DFBE12701]
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution
Moretti S., Murri R., Maffioletti S., Kuzniar A., Castella B, Salamin N., Robinson-Rechavi M., Stockinger H., 2012. pp. 59-68 dans Glatard T, Silverstein J (eds.) HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, IOS Press.
[URN][DOI][Pmid][serval:BIB_542C5BE6E2B7]
 
Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism.
Davies T.J., Kraft N.J., Salamin N., Wolkovich E.M., 2012. Ecology, 93 (2) pp. 242-247. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_35815B0E0278]
 
Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna
Pellissier L., Litsios G., Fiedler K., Pottier J., Dubuis A., Pradervand J.N., Salamin N., Guisan A., 2012. Journal of Biogeography, 39 (10) pp. 1782-1790. Peer-reviewed.
[DOI][WoS][serval:BIB_722D37319FD7]
Mutualism with sea anemones triggered the adaptive radiation of clownfishes.
Litsios G., Sims C.A., Wüest R.O., Pearman P.B., Zimmermann N.E., Salamin N., 2012. BMC Evolutionary Biology, 12 (1) p. 212. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_748C691EA131]
 
New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins.
Grass Phylogeny Working Group II, 2012. New Phytologist, 193 (2) pp. 304-312.
[DOI][WoS][Pmid][serval:BIB_BB622F7740B2]
 
Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family.
Yang S.Y., Grønlund M., Jakobsen I., Grotemeyer M.S., Rentsch D., Miyao A., Hirochika H., Kumar C.S., Sundaresan V., Salamin N. et al., 2012. Plant Cell, 24 (10) pp. 4236-4251.
[DOI][WoS][Pmid][serval:BIB_33C9D7D887E6]
 
Plant DNA barcodes and the influence of gene flow.
Naciri Y., Caetano S., Salamin N., 2012. Molecular Ecology Resources, 12 (4) pp. 575-580. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_95C21DCB8EF0]
 
Sensitivity of Spring Phenology to Warming Across Temporal and Spatial Climate Gradients in Two Independent Databases
Cook B.I., Wolkovich E.M., Davies T.J., Ault T.R., Betancourt J.L., Allen J.M., Bolmgren K., Cleland E.E., Crimmins T.M., Kraft N.J.B. et al., 2012. Ecosystems, 15 (8) pp. 1283-1294. Peer-reviewed.
[DOI][WoS][serval:BIB_EC6A6196D8B6]
SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model
Schabauer H., Valle M., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Yang Z., Salamin N., 2012. pp. 700-708 dans Aluru S., Bader D.A. (eds.) HiCOMB (11th IEEE International Workshop on High Performance Computational Biology). Peer-reviewed, IEEE.
[URN][DOI][serval:BIB_5F7B13551FF8]
The evolutionary host switches of Polychromophilus: a multi-gene phylogeny of the bat malaria genus suggests a second invasion of mammals by a haemosporidian parasite.
Witsenburg F., Salamin N., Christe P., 2012. Malaria Journal, 11 (1) p. 53. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9A04FC37E593]
 
Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae).
Litsios G., Pellissier L., Forest F., Lexer C., Pearman P.B., Zimmermann N.E., Salamin N., 2012. Proceedings of the Royal Society of London B Biological Sciences, 279 (1743) pp. 3662-3669. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_62E8928EC9DF]
 
Warming experiments underpredict plant phenological responses to climate change.
Wolkovich E.M., Cook B.I., Allen J.M., Crimmins T.M., Betancourt J.L., Travers S.E., Pau S., Regetz J., Davies T.J., Kraft N.J. et al., 2012. Nature, 485 (7399) pp. 494-497. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1A3BD6819BA0]
2011
Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study.
Buerki S., Forest F., Salamin N., Alvarez N., 2011. Systematic Biology, 60 (1) pp. 32-44. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AD8F3F9AC659]
 
GrassPortal: an online ecological and evolutionary data facility for the grasses
Osborne C.P., Visser V., Freckleton R.P., Simpson D., Clayton D., Barker A., Chapman S., Salamin N., Uren V., GrassPortal Dev Team, 2011., South African Association of Botanists - Annual Meeting 2011 pp. 566-566 dans Van Staden J. (eds.) South African Journal of Botany, South African Journal of Botany, Elsevier.
[DOI][WoS][serval:BIB_3F66071F72F1]
 
Spatial predictions of phylogenetic diversity in conservation decision making.
Pio D.V., Broennimann O., Barraclough T.G., Reeves G., Rebelo A.G., Thuiller W., Guisan A., Salamin N., 2011. Conservation Biology, 25 (6) pp. 1229-1239. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_151965D1F535]
2010
 
Adaptive divergence of ancient gene duplicates in the avian MHC class II beta.
Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L., 2010. Molecular Biology and Evolution, 27 (10) pp. 2360-2374. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_58E9592A045F]
 
Assessing rapid evolution in a changing environment.
Salamin N., Wüest R.O., Lavergne S., Thuiller W., Pearman P.B., 2010. Trends in Ecology and Evolution, 25 (12) pp. 692-698. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5383B1A816D1]
Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl.
Roulin A., Salamin N., 2010. Journal of Evolutionary Biology, 23 (5) pp. 925-934. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C4B15CC3C0A4]
 
Phylogenetic analysis of plastid and nuclear DNA sequences reveals a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae)
Hodkinson T. R., Chonghaile G. N., Sungkaew S., Chase M. W., Salamin N., Stapleton C. M. A., 2010. Plant Ecology and Diversity, 3 (2) pp. 109-120. Peer-reviewed.
[DOI][WoS][serval:BIB_F70F47917567]
 
The origins of C4 grasslands: integrating evolutionary and ecosystem science.
Edwards E.J., Osborne C.P., Strömberg C.A., Smith S.A., C4 Grasses Consortium, Bond W.J., Bond W.J., Christin P.A., Cousins A.B., Duvall M.R. et al., 2010. Science, 328 (5978) pp. 587-591. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_07C1ECFDF887]
2009
 
Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype.
Christin P.A., Petitpierre B., Salamin N., Büchi L., Besnard G., 2009. Molecular Biology and Evolution, 26 (2) pp. 357-365. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_37EBFB47DFC6]
Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics
Christin P.A., Samaritani E., Petitpierre B., Salamin N., Besnard G., 2009. Genome Biology and Evolution, 2009 pp. 221-230. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_D56AF8232BAB]
Integrating phylogeny into studies of C4 variation in the grasses.
Christin P.A., Salamin N., Kellogg E.A., Vicentini A., Besnard G., 2009. Plant Physiology, 149 (1) pp. 82-87. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A1A61DF6ACDE]
 
Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.
Sungkaew S., Stapleton C.M., Salamin N., Hodkinson T.R., 2009. Journal of Plant Research, 122 (1) pp. 95-108. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_79DDCBBB280B]
 
Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence.
Besnard G., Muasya A.M., Russier F., Roalson E.H., Salamin N., Christin P.A., 2009. Molecular biology and evolution, 26 (8) pp. 1909-1919. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9AF4FA630D24]
 
Selection on a eumelanic ornament is stronger in the tropics than in temperate zones in the worldwide-distributed barn owl.
Roulin A., Wink M., Salamin N., 2009. Journal of Evolutionary Biology, 22 (2) pp. 345-354. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3AD471B5727D]
2008
 
Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution.
Burri R., Niculita Hirzel Hélène, Salamin N., Roulin A., Fumagalli L., 2008/06. Molecular Biology and Evolution, 25 (6) pp. 1180-1191. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5B95D7E0D7F1]
Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes.
Dubey S., Salamin N., Ruedi M., Barrière P., Colyn M., Vogel P., 2008. Molecular Phylogenetics and Evolution, 48 (3) pp. 953-963. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0F13703160DB]
 
Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis.
Christin P.A., Salamin N., Muasya A.M., Roalson E.H., Russier F., Besnard G., 2008. Molecular Biology and Evolution, 25 (11) pp. 2361-2368. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_026D5AF08773]
 
Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling.
Bouchenak-Khelladi Y., Salamin N., Savolainen V., Forest F., Bank M., Chase M.W., Hodkinson T.R., 2008. Molecular Phylogenetics and Evolution, 47 (2) pp. 488-505. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_15EE42376B12]
 
Oligocene CO2 decline promoted C4 photosynthesis in grasses.
Christin P.A., Besnard G., Samaritani E., Duvall M.R., Hodkinson T.R., Savolainen V., Salamin N., 2008. Current Biology, 18 (1) pp. 37-43. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_05E5E51B6F29]
2007
 
A phylogenetic study of the phosphoenolpyruvate carboxylase multigene family in Poaceae: understanding the molecular changes linked to C4 photosynthesis evolution
Christin P.A., Salamin N., Savolainen V., Besnard G., 2007. Kew Bulletin, 62 (3) pp. 455-462. Peer-reviewed.
[serval:BIB_8893933F0599]
 
C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.
Christin P.A., Salamin N., Savolainen V., Duvall M.R., Besnard G., 2007. Current Biology, 17 (14) pp. 1241-1247. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F49509608278]
 
DNA banking for plant breeding, biotechnology and biodiversity evaluation.
Hodkinson T.R., Waldren S., Parnell J.A., Kelleher C.T., Salamin K., Salamin N., 2007. Journal of Plant Research, 120 (1) pp. 17-29. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_696B49B2BF5B]
Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations.
Dubey S., Salamin N., Ohdachi S.D., Barrière P., Vogel P., 2007. Molecular Phylogenetics and Evolution, 44 (1) pp. 126-137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_56F2651B0411]
 
Supersizing: progress in documenting and understanding grass species richness
Hodkinson T.R., Savolainen V., Jacobs S.W.L., Bouchenak-Khelladi Y., Kinney M.S., Salamin N., 2007. pp. 275-298 dans Hodkinson T.R., Parnell J.A.N. (eds.) Reconstructing the tree of life: taxonomy and systematics of species rich taxa chap. 17, CRC Press.
[DOI][serval:BIB_52347CFC8C2E]
2006
 
Evolutionary biology - Sympatric plant speciation in islands? Reply
Savolainen V., Lexer C., Anstett M. C., Hutton I., Clarkson J. J., Norup M. V., Powell M. P., Springate D., Salamin N., Baker W. J., 2006/10. Nature, 443 (7114) pp. E12-13. Peer-reviewed.
[DOI][WoS][serval:BIB_FFDD9ADC06E9]
Cadmium hyperaccumulation and genetic differentiation of Thlaspi caerulescens populations
Basic N., Salamin N., Keller C., Galland N., Besnard G., 2006. Biochemical Systematics and Ecology, 34 pp. 667-677.
[DOI][WoS][serval:BIB_B2A8A29D0D87]
 
Changes in tree phenology: an indicator of spring warming in Ireland?
Donnelly A., Salamin N., Jones M. B., 2006. Biology and Environment: Proceedings of the Irish Royal Academy, 106 (1) pp. 49-56. Peer-reviewed.
[DOI][serval:BIB_66E7E029F3A8]
 
Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences
McGrath S., Hodkinson T.R., Salamin N., Barth S., 2006. Molecular Ecology Notes, 6 (2) pp. 449-452. Peer-reviewed.
[DOI][WoS][serval:BIB_1AD82EA49DBD]
 
Exotic taxa less related to native species are more invasive.
Strauss S.Y., Webb C.O., Salamin N., 2006. Proceedings of the National Academy of Sciences of the United States of America, 103 (15) pp. 5841-5845. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6D2C2EF3666A]
 
Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs.
Flannery M.L., Mitchell F.J., Coyne S., Kavanagh T.A., Burke J.I., Salamin N., Dowding P., Hodkinson T.R., 2006. Theoretical and Applied Genetics, 113 (7) pp. 1221-1231. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B998C07260F2]
 
Sympatric speciation in palms on an oceanic island.
Savolainen V., Anstett M.C., Lexer C., Hutton I., Clarkson J.J., Norup M.V., Powell M.P., Springate D., Salamin N., Baker W.J., 2006. Nature, 441 (7090) pp. 210-213. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0276B7CEA41E]
2005
 
60 million years of co-divergence in the fig-wasp symbiosis.
Rønsted N., Weiblen G.D., Cook J.M., Salamin N., Machado C.A., Savolainen V., 2005. Proceedings of the Royal Society of London B Biological Sciences, 272 (1581) pp. 2593-2599. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8E12C3C6154A]
 
Land plants and DNA barcodes: short-term and long-term goals.
Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., Savolainen V., 2005. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360 (1462) pp. 1889-1895. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E7E94D739675]
 
Towards building the tree of life: a simulation study for all angiosperm genera.
Salamin N., Hodkinson T.R., Savolainen Coates V., 2005. Systematic Biology, 54 (2) pp. 183-196. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_415B7A05529C]
2004
Using supertrees to investigate species richness in grasses and flowering plants
Salamin N., Davies T. J., 2004. pp. 461-486 dans Bininda-Emonds O.R.P. (eds.) Phylogenetic supertrees chap. 21, Kluwer Academic Publishers.
[serval:BIB_D04D692294E1]
2003
 
Assessing internal support with large phylogenetic DNA matrices.
Salamin N., Chase M.W., Hodkinson T.R., Savolainen V., 2003. Molecular Phylogenetics and Evolution, 27 (3) pp. 528-539. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8A796982A05C]
2002
 
Building supertrees: an empirical assessment using the grass family (Poaceae).
Salamin N., Hodkinson T.R., Savolainen V., 2002. Systematic Biology, 51 (1) pp. 136-150. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CB3F43079FD6]
 
Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers.
Hodkinson T.R., Chase M.W., Lledó M.D., Salamin N., Renvoize S.A., 2002. Journal of Plant Research, 115 (5) pp. 381-392. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1C9B60BC3B11]
 
Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion.
Savolainen V., Chase M.W., Salamin N., Soltis D.E., Soltis P.S., López A.J., Fédrigo O., Naylor G.J., 2002. Systematic Biology, 51 (4) pp. 638-647. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3C816873992E]
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