Frédéric Schütz

Publications | Phd and Masters theses

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39 publications

2024 | 2023 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2005 | 2004 | 2003 |
2024
Quantitative T2 Mapping of Acute Pancreatitis.
Porões F., Vietti Violi N., Piazza G., Uldry E., Lázaro-Fontanet E., Gaspar-Figueiredo S., Hilbert T., Ledoux J.B., Denys A., Schütz F. et al., 2024/12. Journal of magnetic resonance imaging, 60 (6) pp. 2683-2691. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B30F85E440DA]
 
Variant-specific pathophysiological mechanisms of AFF3 differently influence transcriptome profiles.
Bassani S., Chrast J., Ambrosini G., Voisin N., Schütz F., Brusco A., Sirchia F., Turban L., Schubert S., Abou Jamra R. et al., 2024/05/30. Genome medicine, 16 (1) p. 72. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2A129453D91A]
2023
 
How Donor Profile Affects the Outcome of Heart Transplant: A New Score to Predict Primary Graft Failure
Hoti E., Hullin R., Kirsch M., Schütz F., Tozzi P., 2023/11/21. Journal of Thoracic Disease and Cardiothoracic Surgery, 4 (5) pp. 01-11. Peer-reviewed.
[DOI][serval:BIB_E89410DC02D1]
2021
 
Prognostic impact of extranodal extension in resected head and neck squamous cell carcinomas in the era of postoperative chemoradiation: A retrospective monocentric study.
Gau M., Fonseca A., Ozsahin M., Fayette J., Poupart M., Roux P.E., Schütz F., Zrounba P., Grégoire V., 2021/12. Oral oncology, 123 p. 105605. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4446FA1BC358]
2020
Prevalence Estimate of Blood Doping in Elite Track and Field Athletes During Two Major International Events.
Faiss R., Saugy J., Zollinger A., Robinson N., Schuetz F., Saugy M., Garnier PY, 2020/02/25. Frontiers in physiology, 11 p. 160. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_78FC8C51BAC6]
2019
 
Worldwide distribution of blood values in elite track and field athletes: Biomarkers of altered erythropoiesis.
Robinson N., Saugy J., Schütz F., Faiss R., Baume N., Giraud S., Saugy M., 2019/04. Drug testing and analysis, 11 (4) pp. 567-577. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7C52903928FA]
Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment.
Bezler A., Braukmann F., West S.M., Duplan A., Conconi R., Schütz F., Gönczy P., Piano F., Gunsalus K., Miska E.A. et al., 2019. PLoS Genetics, 15 (2) pp. e1007905. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_298BFAD57531]
2018
ABPS: An R Package for Calculating the Abnormal Blood Profile Score.
Schütz F., Zollinger A., 2018. Frontiers in Physiology, 9 p. 1638. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8AD72D94B997]
2017
 
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_66296D0251EE]
Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.
Mange F., Praz V., Migliavacca E., Willis I.M., Schütz F., Hernandez N., CycliX Consortium, 2017/06. Genome research, 27 (6) pp. 973-984. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_240C54C8CA8A]
2016
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71EF45D9A3D9]
Identification of a novel PPARβ/δ/miR-21-3p axis in UV-induced skin inflammation.
Degueurce G., D'Errico I., Pich C., Ibberson M., Schütz F., Montagner A., Sgandurra M., Mury L., Jafari P., Boda A. et al., 2016. EMBO Molecular Medicine, 8 (8) pp. 919-936. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EC0CAB165489]
 
Presence of Leishmania RNA Virus 1 in Leishmania guyanensis Increases the Risk of First-Line Treatment Failure and Symptomatic Relapse.
Bourreau E., Ginouves M., Prévot G., Hartley M.A., Gangneux J.P., Robert-Gangneux F., Dufour J., Sainte-Marie D., Bertolotti A., Pratlong F. et al., 2016. Journal of Infectious Diseases, 213 (1) pp. 105-111. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C7B01273E737]
 
Validation of the Mass-Extraction-Window for Quantitative Methods Using Liquid Chromatography High Resolution Mass Spectrometry.
Glauser G., Grund B., Gassner A.L., Menin L., Henry H., Bromirski M., Schütz F., McMullen J., Rochat B., 2016. Analytical Chemistry, 88 (6) pp. 3264-3271. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ADC87612A626]
2015
 
Endothelial, but not smooth muscle, peroxisome proliferator-activated receptor β/δ regulates vascular permeability and anaphylaxis.
Wawrzyniak M., Pich C., Gross B., Schütz F., Fleury S., Quemener S., Sgandurra M., Bouchaert E., Moret C., Mury L. et al., 2015. Journal of Allergy and Clinical Immunology, 135 (6) pp. 1625-1635.e5. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1ED6EDEE8520]
Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures.
Wilkins L.G., Rogivue A., Schütz F., Fumagalli L., Wedekind C., 2015. Scientific Reports, 5 p. 17084. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B743427A54D5]
2014
Reduced phototropism in pks mutants may be due to altered auxin-regulated gene expression or reduced lateral auxin transport.
Kami C., Allenbach L., Zourelidou M., Ljung K., Schütz F., Isono E., Watahiki M.K., Yamamoto K.T., Schwechheimer C., Fankhauser C., 2014. Plant Journal, 77 (3) pp. 393-403. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_782E9B5128BA]
2013
HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy.
Michaud J., Praz V., James Faresse N., Jnbaptiste C.K., Tyagi S., Schütz F., Herr W., 2013. Genome Research, 23 (6) pp. 907-916.
[URN][DOI][WoS][Pmid][serval:BIB_971548BE9993]
Hepatic glucose sensing is required to preserve β cell glucose competence.
Seyer P., Vallois D., Poitry-Yamate C., Schütz F., Metref S., Tarussio D., Maechler P., Staels B., Lanz B., Grueter R. et al., 2013. Journal of Clinical Investigation, 123 (4) pp. 1662-1676.
[URN][DOI][WoS][Pmid][serval:BIB_FD22C2D96632]
2012
Mechanisms and evolutionary patterns of mammalian and avian dosage compensation.
Julien P., Brawand D., Soumillon M., Necsulea A., Liechti A., Schütz F., Daish T., Grützner F., Kaessmann H., 2012. PLoS Biology, 10 (5) pp. e1001328.
[URN][DOI][WoS][Pmid][serval:BIB_9F92052546C6]
2011
 
Copy number variation modifies expression time courses.
Chaignat E., Yahya-Graison E.A., Henrichsen C.N., Chrast J., Schütz F., Pradervand S., Reymond A., 2011. Genome Research, 21 (1) pp. 106-113.
[DOI][WoS][Pmid][serval:BIB_F86987ABB7C7]
Leishmania RNA virus controls the severity of mucocutaneous leishmaniasis.
Ives A., Ronet C., Prevel F., Ruzzante G., Fuertes-Marraco S., Schutz F., Zangger H., Revaz-Breton M., Lye L.F., Hickerson S.M. et al., 2011. Science, 331 (6018) pp. 775-778.
[URN][DOI][WoS][Pmid][serval:BIB_8FAE2070D6E0]
Protein-Binding Microarray Analysis of Tumor Suppressor AP2α Target Gene Specificity.
Kerschgens J., Renaud S., Schütz F., Grasso L., Egener-Kuhn T., Delaloye J.F., Lehr H.A., Vogel H., Mermod N., 2011. Plos One, 6 (8) pp. e22895.
[URN][DOI][WoS][Pmid][serval:BIB_279EFB4814CA]
2010
EuroDia: a beta-cell gene expression resource.
Liechti R., Csárdi G., Bergmann S., Schütz F., Sengstag T., Boj S.F., Servitja J.M., Ferrer J., Van Lommel L., Schuit F. et al., 2010. Database, 2010 pp. baq024.
[URN][DOI][Pmid][serval:BIB_0D9E4ED81B05]
Phenotypic consequences of copy number variation: insights from Smith-Magenis and Potocki-Lupski syndrome mouse models.
Ricard G., Molina J., Chrast J., Gu W., Gheldof N., Pradervand S., Schütz F., Young J.I., Lupski J.R., Reymond A. et al., 2010. PLoS Biology, 8 (11) pp. e1000543. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_034A965C3133]
 
The effect of translocation-induced nuclear reorganization on gene expression.
Harewood L., Schütz F., Boyle S., Perry P., Delorenzi M., Bickmore W.A., Reymond A., 2010. Genome Research, 20 (5) pp. 554-564. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_38609FB2657D]
The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates.
Soulard A., Cremonesi A., Moes S., Schütz F., Jenö P., Hall M.N., 2010. Molecular Biology of the Cell, 21 (19) pp. 3475-3486. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0F9AEF8931C2]
2009
 
Transcriptional and post-transcriptional profile of human chromosome 21
Nikolaev S. I., Deutsch S., Genolet R., Borel C., Parand L., Ucla C., Schutz F., Duriaux Sail G., Dupre Y., Jaquier-Gubler P. et al., 2009/08/01. Genome Research, 19 (8) pp. 1471-1479.
[DOI][WoS][Pmid][serval:BIB_D4A6B73DA66D]
 
Segmental copy number variation shapes tissue transcriptomes.
Henrichsen C.N., Vinckenbosch N., Zöllner S., Chaignat E., Pradervand S., Schütz F., Ruedi M., Kaessmann H., Reymond A., 2009. Nature Genetics, 41 (4) pp. 424-429. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6CF6E18F8771]
2008
 
c-Cbl expression levels regulate the functional responses of human central and effector memory CD4 T cells.
Brembilla N.C., Weber J., Rimoldi D., Pradervand S., Schütz F., Pantaleo G., Rüegg C., Quadroni M., Harshman K., Doucey M.A., 2008. Blood, 112 (3) pp. 652-660.
[DOI][WoS][Pmid][serval:BIB_6DDFA2713E61]
 
Genotypic features of lentivirus transgenic mice.
Sauvain M.O., Dorr A.P., Stevenson B., Quazzola A., Naef F., Wiznerowicz M., Schütz F., Jongeneel V., Duboule D., Spitz F. et al., 2008. Journal of Virology, 82 (14) pp. 7111-7119. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_398BEFA688A2]
Integrative analysis of RUNX1 downstream pathways and target genes.
Michaud J., Simpson K.M., Escher R., Buchet-Poyau K., Beissbarth T., Carmichael C., Ritchie M.E., Schütz F., Cannon P., Liu M. et al., 2008. BMC Genomics, 9 (363) p. 363.
[URN][DOI][WoS][Pmid][serval:BIB_4D757BDF83EB]
 
MAMOT: hidden Markov modeling tool.
Schütz F., Delorenzi M., 2008. Bioinformatics, 24 (11) pp. 1399-1400. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_27B037E1F4A8]
Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures.
Wirapati P., Sotiriou C., Kunkel S., Farmer P., Pradervand S., Haibe-Kains B., Desmedt C., Ignatiadis M., Sengstag T., Schütz F. et al., 2008. Breast Cancer Research, 10 (4) pp. R65.
[URN][DOI][WoS][Pmid][serval:BIB_B7D39624AFAC]
 
Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS)
Colzani M., Schutz F., Potts A., Waridel P., Quadroni M., 2008. Molecular and Cellular Proteomics, 7 (5) pp. 927-937. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_173947FB7885]
2005
 
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis
Kapp Eugene, Schütz Frédéric, Connolly Lisa, Chakel John, Meza Jose, Miller Christine, Fenyo David, Eng Jimmy, Adkins Joshua, Omenn Gilbert et al., 2005/08. PROTEOMICS, 5 (13) pp. 3475-3490.
[DOI][WoS][Pmid][serval:BIB_1D6A068851CB]
2004
 
A Proteome Strategy for Fractionating Proteins and Peptides Using Continuous Free-Flow Electrophoresis Coupled Off-Line to Reversed-Phase High-Performance Liquid Chromatography
Moritz Robert L., Ji Hong, Schütz Frédéric, Connolly Lisa M., Kapp Eugene A., Speed Terence P., Simpson Richard J., 2004/08. Analytical Chemistry, 76 (16) pp. 4811-4824.
[DOI][WoS][Pmid][serval:BIB_96CA4881F4D9]
2003
 
Deriving statistical models for predicting peptide tandem MS product ion intensities
Schütz F., Kapp E.A., Simpson R.J., Speed T.P., 2003/12/01. Biochemical Society Transactions, 31 (6) pp. 1479-1483.
[DOI][serval:BIB_9D4DB4EA6D63]
 
Mining a Tandem Mass Spectrometry Database To Determine the Trends and Global Factors Influencing Peptide Fragmentation
Kapp Eugene A., Schütz Frédéric, Reid Gavin E., Eddes James S., Moritz Robert L., O'Hair Richard A. J., Speed Terence P., Simpson Richard J., 2003/11. Analytical Chemistry, 75 (22) pp. 6251-6264.
[DOI][WoS][Pmid][serval:BIB_0254D72B2EA7]
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