Anne Niknejad

Publications | Phd and Masters theses

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16 publications

2025 | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 |
2025
 
Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools.
Bastian F.B., Cammarata A.B., Carsanaro S., Detering H., Huang W.T., Joye S., Niknejad A., Nyamari M., Mendes de Farias T., Moretti S. et al., 2025/01/06. Nucleic acids research, 53 (D1) pp. D878-D885. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3F567BF2FDA6]
2024
A Federated Database for Obesity Research: An IMI-SOPHIA Study.
Delfin C., Dragan I., Kuznetsov D., Tajes J.F., Smit F., Coral D.E., Farzaneh A., Haugg A., Hungele A., Niknejad A. et al., 2024/02/16. Life, 14 (2). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_013C26451C78]
2023
Identification of biomarkers for glycaemic deterioration in type 2 diabetes.
Slieker R.C., Donnelly L.A., Akalestou E., Lopez-Noriega L., Melhem R., Güneş A., Abou Azar F., Efanov A., Georgiadou E., Muniangi-Muhitu H. et al., 2023/05/03. Nature communications, 14 (1) p. 2533. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0BEB8E436325]
2022
 
Creation and unification of development and life stage ontologies for animals
Niknejad Anne, Mungall Christopher J., Osumi-Sutherland David, Robinson-Rechavi Marc, Bastian Frederic B., 2022..
[DOI][serval:BIB_A85E6647A76E]
2021
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Touré V., Vercruysse S., Acencio M.L., Lovering R.C., Orchard S., Bradley G., Casals-Casas C., Chaouiya C., Del-Toro N., Flobak Å. et al., 2021/04/05. Bioinformatics, 36 (24) pp. 5712-5718. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_4DF8A0977CCD]
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Bastian F.B., Roux J., Niknejad A., Comte A., Fonseca Costa S.S., de Farias T.M., Moretti S., Parmentier G., Rech de Laval V., Rosikiewicz M. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D831-D847. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_FD0CF4F734E7]
2020
 
Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patients.
Fontana P., Ibberson M., Stevenson B., Wigger L., Daali Y., Niknejad A., Mach F., Docquier M., Xenarios I., Cuisset T. et al., 2020/06. Journal of thrombosis and haemostasis, 18 (6) pp. 1425-1434. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_310A8D0307B7]
2019
Updates in Rhea: SPARQLing biochemical reaction data.
Lombardot T., Morgat A., Axelsen K.B., Aimo L., Hyka-Nouspikel N., Niknejad A., Ignatchenko A., Xenarios I., Coudert E., Redaschi N. et al., 2019/01/08. Nucleic acids research, 47 (D1) pp. D596-D600. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_593223E3F0D5]
2017
Updates in Rhea - an expert curated resource of biochemical reactions.
Morgat A., Lombardot T., Axelsen K.B., Aimo L., Niknejad A., Hyka-Nouspikel N., Coudert E., Pozzato M., Pagni M., Moretti S. et al., 2017/01/04. Nucleic acids research, 45 (D1) pp. D415-D418. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D4F55C24D893]
2016
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71EF45D9A3D9]
Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.
Loviglio M.N., Beck C.R., White J.J., Leleu M., Harel T., Guex N., Niknejad A., Bi W., Chen E.S., Crespo I. et al., 2016. Genome medicine, 8 (1) p. 105. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_1820D72F7FFD]
2015
An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation.
Chasapi A., Wachowicz P., Niknejad A., Collin P., Krapp A., Cano E., Simanis V., Xenarios I., 2015. Plos One, 10 (8) pp. e0134214.
[URN][DOI][WoS][Pmid][serval:BIB_9AA13CA514FC]
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.
Bastian F.B., Chibucos M.C., Gaudet P., Giglio M., Holliday G.L., Huang H., Lewis S.E., Niknejad A., Orchard S., Poux S. et al., 2015. Database, 2015 pp. bav043. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60CACFAC405E]
2014
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Haendel M.A., Balhoff J.P., Bastian F.B., Blackburn D.C., Blake J.A., Bradford Y., Comte A., Dahdul W.M., Dececchi T.A., Druzinsky R.E. et al., 2014. Journal of Biomedical Semantics, 5 p. 21. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F76940F670C4]
2013
Uncovering hidden duplicated content in public transcriptomics data.
Rosikiewicz M., Comte A., Niknejad A., Robinson-Rechavi M., Bastian F.B., 2013. Database, 2013 pp. bat010. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_230AE9FE1902]
2012
vHOG, a multispecies vertebrate ontology of homologous organs groups.
Niknejad A., Comte A., Parmentier G., Roux J., Bastian F.B., Robinson-Rechavi M., 2012. Bioinformatics, 28 (7) pp. 1017-1020. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5605BDB61FC5]
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