Clément Train

Publications | Phd and Masters theses

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7 publications

2025 | 2024 | 2021 | 2019 | 2018 | 2017 | 2015 |
2025
 
Quality assessment of gene repertoire annotations with OMArk.
Nevers Y., Warwick Vesztrocy A., Rossier V., Train C.M., Altenhoff A., Dessimoz C., Glover N.M., 2025/01. Nature biotechnology, 43 (1) pp. 124-133. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_85062152E9B8]
2024
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families.
Rossier V., Train C., Nevers Y., Robinson-Rechavi M., Dessimoz C., 2024/06/04. Genome biology and evolution, 16 (6). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4116D88C5FB0]
2021
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Altenhoff A.M., Train C.M., Gilbert K.J., Mediratta I., Mendes de Farias T., Moi D., Nevers Y., Radoykova H.S., Rossier V., Warwick Vesztrocy A. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D373-D379. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A827EF929B38]
2019
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome.
Piližota I., Train C.M., Altenhoff A., Redestig H., Dessimoz C., 2019/04/01. Bioinformatics, 35 (7) pp. 1159-1166. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6469004280EE]
2018
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff A.M., Glover N.M., Train C.M., Kaleb K., Warwick Vesztrocy A., Dylus D., de Farias T.M., Zile K., Stevenson C., Long J. et al., 2018/01/04. Nucleic acids research, 46 (D1) pp. D477-D485. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FC0F04688D1D]
2017
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
Train C.-M., Glover N.M., Gonnet G.H., Altenhoff A.M., Dessimoz C., 2017. Bioinformatics, 33 (14) pp. i75-i82.
[URN][DOI][WoS][serval:BIB_7D03376859BC]
2015
 
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.
Altenhoff A.M., Škunca N., Glover N., Train C.M., Sueki A., Piližota I., Gori K., Tomiczek B., Müller S., Redestig H. et al., 2015/01. Nucleic acids research, 43 (Database issue) pp. D240-9. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0E374421DCD4]
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