Yolanda Schaerli

Publications | Phd and Masters theses

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33 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2010 | 2009 |
2024
Fecal transplant allows transmission of the gut microbiota in honey bees.
Cabirol A., Chhun A., Liberti J., Kesner L., Neuschwander N., Schaerli Y., Engel P., 2024/09/25. mSphere, 9 (9) pp. e0026224. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EF2AA95DF8B4]
From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator.
Park J.H., Holló G., Schaerli Y., 2024/08/23. Nature communications, 15 (1) p. 7284. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_31414E598D6E]
An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment.
Chhun A., Moriano-Gutierrez S., Zoppi F., Cabirol A., Engel P., Schaerli Y., 2024/03. PLoS biology, 22 (3) pp. e3002523. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_88028872E2EA]
2023
Synthetic genetic oscillators demonstrate the functional importance of phenotypic variation in pneumococcal-host interactions.
Rueff A.S., van Raaphorst R., Aggarwal S.D., Santos-Moreno J., Laloux G., Schaerli Y., Weiser J.N., Veening J.W., 2023/11/17. Nature communications, 14 (1) p. 7454. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_335B2F934BB3]
Synthetic Gene Circuits Combining CRISPR Interference and CRISPR Activation in E. coli: Importance of Equal Guide RNA Binding Affinities to Avoid Context-Dependent Effects.
Barbier I., Kusumawardhani H., Chauhan L., Harlapur P.V., Jolly M.K., Schaerli Y., 2023/10/20. ACS synthetic biology, 12 (10) pp. 3064-3071. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_08B8A64D03F1]
Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks.
Baier F., Gauye F., Perez-Carrasco R., Payne J.L., Schaerli Y., 2023/05/24. Science advances, 9 (21) pp. eadf1773. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2BCC90477E24]
Robustness and innovation in synthetic genotype networks.
Santos-Moreno J., Tasiudi E., Kusumawardhani H., Stelling J., Schaerli Y., 2023/04/28. Nature communications, 14 (1) p. 2454. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5D0D254CCA47]
2022
Engineering synthetic spatial patterns in microbial populations and communities.
Barbier I., Kusumawardhani H., Schaerli Y., 2022/06. Current opinion in microbiology, 67 p. 102149. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1E95F9FE260E]
2021
Addressing Evolutionary Questions with Synthetic Biology
Baier Florian, Schaerli Yolanda, 2021. pp. 135-157 dans Evolutionary Systems Biology, Springer International Publishing.
[URN][DOI][serval:BIB_CB90D7E34905]
2020
CRISPR-based gene expression control for synthetic gene circuits.
Santos-Moreno J., Schaerli Y., 2020/10/30. Biochemical Society transactions, 48 (5) pp. 1979-1993. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5D99E1081188]
Multistable and dynamic CRISPRi-based synthetic circuits.
Santos-Moreno J., Tasiudi E., Stelling J., Schaerli Y., 2020/06/02. Nature communications, 11 (1) p. 2746. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9C270BA8A587]
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch.
Barbier I., Perez-Carrasco R., Schaerli Y., 2020/06. Molecular systems biology, 16 (6) pp. e9361. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_35C2422DBA31]
Changing the biological Rosetta stone: the (commercial) potential of recoded microbes.
Santos-Moreno J., Schaerli Y., 2020/01. Microbial biotechnology, 13 (1) pp. 11-13.
[URN][DOI][WoS][Pmid][serval:BIB_6E706DA3083C]
2019
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
Içvara Barbier, Rubén Perez Carrasco, Yolanda Schaerli, 2019/11/21..
[URN][DOI][serval:BIB_6CD3635A3577]
A Framework for the Modular and Combinatorial Assembly of Synthetic Gene Circuits.
Santos-Moreno J., Schaerli Y., 2019/07/19. ACS synthetic biology, 8 (7) pp. 1691-1697. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_842B803713F3]
Using Synthetic Biology to Engineer Spatial Patterns.
Santos-Moreno J., Schaerli Y., 2019/04. Advanced biosystems, 3 (4) pp. e1800280. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_90894E74453C]
2018
Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.
Schaerli Y., Jiménez A., Duarte J.M., Mihajlovic L., Renggli J., Isalan M., Sharpe J., Wagner A., 2018/09/10. Molecular systems biology, 14 (9) pp. e8102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4CEE618A944]
Bacterial Microcolonies in Gel Beads for High-throughput Screening.
Schaerli Y., 2018/07/05. Bio-Protocol, 8 (13) pp. e2911. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_E06DF5436657]
Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.
Perez-Carrasco R., Barnes C.P., Schaerli Y., Isalan M., Briscoe J., Page K.M., 2018/04/25. Cell systems, 6 (4) pp. 521-530.e3. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_832AED933B6C]
2017
Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.
Duarte J.M., Barbier I., Schaerli Y., 2017/11/17. ACS synthetic biology, 6 (11) pp. 1988-1995. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6AE8F65F20EA]
2016
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71EF45D9A3D9]
2015
The propagation of perturbations in rewired bacterial gene networks.
Baumstark R., Hänzelmann S., Tsuru S., Schaerli Y., Francesconi M., Mancuso F.M., Castelo R., Isalan M., 2015. Nature Communications, 6 p. 10105.
[DOI][WoS][Pmid][serval:BIB_B9C508EF13FD]
2014
A split intein T7 RNA polymerase for transcriptional AND-logic.
Schaerli Y., Gili M., Isalan M., 2014. Nucleic Acids Research, 42 (19) pp. 12322-12328.
[DOI][WoS][Pmid][serval:BIB_BAF1E83CDB91]
A unified design space of synthetic stripe-forming networks.
Schaerli Y., Munteanu A., Gili M., Cotterell J., Sharpe J., Isalan M., 2014. Nature Communications, 5 p. 4905.
[DOI][WoS][Pmid][serval:BIB_0DBB42DB9440]
 
Evolution of enzyme catalysts caged in biomimetic gel-shell beads.
Fischlechner M., Schaerli Y., Mohamed M.F., Patil S., Abell C., Hollfelder F., 2014. Nature Chemistry, 6 (9) pp. 791-796.
[DOI][WoS][Pmid][serval:BIB_99EBD3512773]
2013
Building synthetic gene circuits from combinatorial libraries: screening and selection strategies.
Schaerli Y., Isalan M., 2013. Molecular bioSystems, 9 (7) pp. 1559-1567. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C2C3379A8E35]
 
In vitro affinity screening of protein and peptide binders by megavalent bead surface display.
Diamante L., Gatti-Lafranconi P., Schaerli Y., Hollfelder F., 2013. Protein Engineering, Design & Selection, 26 (10) pp. 713-724.
[DOI][WoS][Pmid][serval:BIB_8C3FE7AE3D35]
 
Protein engineering in microdroplets
Schaerli Y., Kintses B., Hollfelder F., 2013. pp. 73-84 dans Lutz S., Bornscheuer U.T. (eds.) Protein Engineering Handbook chap. 4, Wiley-VCH.
[serval:BIB_9BCF6C046B7E]
2010
Isothermal DNA amplification using the T4 replisome: circular nicking endonuclease-dependent amplification and primase-based whole-genome amplification.
Schaerli Y., Stein V., Spiering M.M., Benkovic S.J., Abell C., Hollfelder F., 2010. Nucleic Acids Research, 38 (22) pp. e201. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4495846F6EC3]
 
Microdroplets in microfluidics: an evolving platform for discoveries in chemistry and biology.
Theberge A.B., Courtois F., Schaerli Y., Fischlechner M., Abell C., Hollfelder F., Huck W.T., 2010. Angewandte Chemie, 49 (34) pp. 5846-5868. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_44866C117AE0]
2009
 
Continuous-flow polymerase chain reaction of single-copy DNA in microfluidic microdroplets.
Schaerli Y., Wootton R.C., Robinson T., Stein V., Dunsby C., Neil M.A., French P.M., Demello A.J., Abell C., Hollfelder F., 2009. Analytical Chemistry, 81 (1) pp. 302-306. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_509F32E759B0]
 
Removal of background signals from fluorescence thermometry measurements in PDMS microchannels using fluorescence lifetime imaging.
Robinson T., Schaerli Y., Wootton R., Hollfelder F., Dunsby C., Baldwin G., Neil M., French P., deMello A., 2009. Lab on a Chip, 9 (23) pp. 3437-3441. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_895958E3046E]
 
The potential of microfluidic water-in-oil droplets in experimental biology.
Schaerli Y., Hollfelder F., 2009. Molecular bioSystems, 5 (12) pp. 1392-1404. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6C063C2047E8]
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