Julien Marquis

Publications | Phd and Masters theses

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30 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2015 | 2014 | 2013 | 2010 | 2009 | 2007 | 2006 |
2024
 
DNA methylation by CcrM contributes to genome maintenance in the Agrobacterium tumefaciens plant pathogen.
Martin S., Fournes F., Ambrosini G., Iseli C., Bojkowska K., Marquis J., Guex N., Collier J., 2024/10/28. Nucleic acids research, 52 (19) pp. 11519-11535. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C3DF5C03B52]
The different impact of drug-resistant Leishmania on the transcription programs activated in neutrophils.
Díaz-Varela M., Sanchez-Hidalgo A., Calderon-Copete S., Tacchini V., Shipley T.R., Ramírez L.G., Marquis J., Fernández O.L., Saravia N.G., Tacchini-Cottier F., 2024/05/17. iScience, 27 (5) p. 109773. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5116AC3E7FBF]
2023
 
DNA methylation by CcrM contributes to genome maintenance in the Agrobacterium tumefaciens plant pathogen
Martin Sandra, Fournes Florian, Ambrosini Giovanna, Iseli Christian, BOJKOWSKA Karolina, Marquis Julien, Guex Nicolas, Collier Justine, 2023/11/28..
[DOI][serval:BIB_336924D9FAFA]
2022
Pivotal role of O-antigenic polysaccharide display in the sensitivity against phage tail-like particles in environmental Pseudomonas kin competition.
Heiman C.M., Maurhofer M., Calderon S., Dupasquier M., Marquis J., Keel C., Vacheron J., 2022/07. The ISME journal, 16 (7) pp. 1683-1693. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B47F87DA7122]
 
Network Analyses Reveal Negative Link Between Changes in Adipose Tissue GDF15 and BMI During Dietary-induced Weight Loss.
Imbert A., Vialaneix N., Marquis J., Vion J., Charpagne A., Metairon S., Laurens C., Moro C., Boulet N., Walter O. et al., 2022/01/01. The Journal of clinical endocrinology and metabolism, 107 (1) pp. e130-e142. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B4C3C6836BBB]
2021
Whole-genome sequencing analysis of semi-supercentenarians.
Garagnani P., Marquis J., Delledonne M., Pirazzini C., Marasco E., Kwiatkowska K.M., Iannuzzi V., Bacalini M.G., Valsesia A., Carayol J. et al., 2021/05/04. eLife, 10 pp. e57849. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9D4703EE2910]
2020
Genomic history of the Italian population recapitulates key evolutionary dynamics of both Continental and Southern Europeans.
Sazzini M., Abondio P., Sarno S., Gnecchi-Ruscone G.A., Ragno M., Giuliani C., De Fanti S., Ojeda-Granados C., Boattini A., Marquis J. et al., 2020/05/22. BMC biology, 18 (1) p. 51. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_63F6704A076C]
 
Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver.
Gobet C., Weger B.D., Marquis J., Martin E., Neelagandan N., Gachon F., Naef F., 2020/04/28. Proceedings of the National Academy of Sciences of the United States of America, 117 (17) pp. 9630-9641. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A408E00959DF]
 
Genetic Susceptibility Determines beta-Cell Function and Fasting Glycemia Trajectories Throughout Childhood: A 12-Year Cohort Study (EarlyBird 76).
Carayol Jerome, Hosking Joanne, Pinkney Jonathan, Marquis Julien, Charpagne Aline, Metairon Sylviane, Jeffery Alison, Hager Jorg, Martin Francois-Pierre, 2020/01. Diabetes care.
[DOI][Pmid][serval:BIB_997C053B86F0]
Time of Lactation and Maternal Fucosyltransferase Genetic Polymorphisms Determine the Variability in Human Milk Oligosaccharides.
Lefebvre G., Shevlyakova M., Charpagne A., Marquis J., Vogel M., Kirsten T., Kiess W., Austin S., Sprenger N., Binia A., 2020. Frontiers in nutrition, 7 p. 574459. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4946BF9ED7AD]
2019
Mitochondrial oxidative capacity and NAD(+) biosynthesis are reduced in human sarcopenia across ethnicities.
Migliavacca Eugenia, Tay Stacey K. H., Patel Harnish P., Sonntag Tanja, Civiletto Gabriele, McFarlane Craig, Forrester Terence, Barton Sheila J., Leow Melvin K., Antoun Elie et al., 2019/12. Nature communications, 10 (1) p. 5808.
[DOI][Pmid][serval:BIB_9D3D5972CC46]
 
Apolipoprotein E4 Expression Causes Gain of Toxic Function in Isogenic Human Induced Pluripotent Stem Cell-Derived Endothelial Cells.
Rieker Claus, Migliavacca Eugenia, Vaucher Angelique, Baud Gilles, Marquis Julien, Charpagne Aline, Hegde Nagabhooshan, Guignard Laurence, McLachlan Michael, Pooler Amy M., 2019/09. Arteriosclerosis, thrombosis, and vascular biology, 39 (9) pp. e195–e207.
[DOI][Pmid][serval:BIB_6F7A8AAF38E6]
 
Salivary alpha-amylase copy number is not associated with weight trajectories and glycemic improvements following clinical weight loss: results from a 2-phase dietary intervention study.
Valsesia Armand, Kulkarni Sameer S., Marquis Julien, Leone Patricia, Mironova Polina, Walter Ondine, Hjorth Mads Fill, Descombes Patrick, Hager Jorg, Saris Wim H. et al., 2019/04. The American journal of clinical nutrition, 109 (4) pp. 1029-1037.
[DOI][Pmid][serval:BIB_2E940B39A73D]
Genetic Risk Score Predictive of the Plasma Triglyceride Response to an Omega-3 Fatty Acid Supplementation in a Mexican Population.
Vallee Marcotte Bastien, Guenard Frederic, Marquis Julien, Charpagne Aline, Vadillo-Ortega Felipe, Tejero Maria Elizabeth, Binia Aristea, Vohl Marie-Claude, 2019/03. Nutrients, 11 (4).
[DOI][Pmid][serval:BIB_D43D1CAA86D0]
2018
 
Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs.
Yeung J., Mermet J., Jouffe C., Marquis J., Charpagne A., Gachon F., Naef F., 2018/02. Genome research, 28 (2) pp. 182-191. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B99C34A1E160]
2017
 
Centenarians as extreme phenotypes: An ecological perspective to get insight into the relationship between the genetics of longevity and age-associated diseases.
Giuliani Cristina, Pirazzini Chiara, Delledonne Massimo, Xumerle Luciano, Descombes Patrick, Marquis Julien, Mengozzi Giacomo, Monti Daniela, Bellizzi Dina, Passarino Giuseppe et al., 2017/07. Mechanisms of ageing and development, 165 (Pt B) pp. 195-201.
[DOI][Pmid][serval:BIB_7F20C2444944]
One-carbon metabolism, cognitive impairment and CSF measures of Alzheimer pathology: homocysteine and beyond.
Dayon L., Guiraud S.P., Corthésy J., Da Silva L., Migliavacca E., Tautvydaitė D., Oikonomidi A., Moullet B., Henry H., Métairon S. et al., 2017/06/17. Alzheimer's research & therapy, 9 (1) p. 43. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C894918E7DAA]
 
MitoRS, a method for high throughput, sensitive, and accurate detection of mitochondrial DNA heteroplasmy.
Marquis Julien, Lefebvre Gregory, Kourmpetis Yiannis A. I., Kassam Mohamed, Ronga Frederic, De Marchi Umberto, Wiederkehr Andreas, Descombes Patrick, 2017/04. BMC genomics, 18 (1) p. 326.
[DOI][Pmid][serval:BIB_7A4269024592]
2015
 
Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver.
Atger F., Gobet C., Marquis J., Martin E., Wang J., Weger B., Lefebvre G., Descombes P., Naef F., Gachon F., 2015. Proceedings of the National Academy of Sciences of the United States of America, 112 (47) pp. E6579-E6588. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FFCC0CC29FFF]
The Use of Non-Variant Sites to Improve the Clinical Assessment of Whole-Genome Sequence Data.
Ferrarini Alberto, Xumerle Luciano, Griggio Francesca, Garonzi Marianna, Cantaloni Chiara, Centomo Cesare, Vargas Sergio Marin, Descombes Patrick, Marquis Julien, Collino Sebastiano et al., 2015. PloS one, 10 (7) pp. e0132180.
[DOI][Pmid][serval:BIB_7A3E586E90E2]
2014
 
[A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy].
Barde Isabelle, Rauwel Benjamin, Marin-Florez Ray Marcel, Corsinotti Andrea, Laurenti Elisa, Verp Sonia, Offner Sandra, Marquis Julien, Kapopoulou Adamandia, Vanicek Jiri et al., 2014/01. Medecine sciences : M/S, 30 (1) pp. 12-15.
[DOI][Pmid][serval:BIB_0BF6C9BB01FD]
2013
 
A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy.
Barde Isabelle, Rauwel Benjamin, Marin-Florez Ray Marcel, Corsinotti Andrea, Laurenti Elisa, Verp Sonia, Offner Sandra, Marquis Julien, Kapopoulou Adamandia, Vanicek Jiri et al., 2013/04. Science (New York, N.Y.), 340 (6130) pp. 350-353.
[DOI][Pmid][serval:BIB_1E2910B286AA]
 
De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET.
Rowe Helen M., Friedli Marc, Offner Sandra, Verp Sonia, Mesnard Daniel, Marquis Julien, Aktas Tugce, Trono Didier, 2013/02. Development (Cambridge, England), 140 (3) pp. 519-529.
[DOI][Pmid][serval:BIB_A5538752C3D0]
 
Peripuberty stress leads to abnormal aggression, altered amygdala and orbitofrontal reactivity and increased prefrontal MAOA gene expression.
Marquez C., Poirier G. L., Cordero M. I., Larsen M. H., Groner A., Marquis J., Magistretti P. J., Trono D., Sandi C., 2013/01. Translational psychiatry, 3 pp. e216.
[DOI][Pmid][serval:BIB_5F567D1EEB17]
2010
 
KAP1 controls endogenous retroviruses in embryonic stem cells.
Rowe Helen M., Jakobsson Johan, Mesnard Daniel, Rougemont Jacques, Reynard Severine, Aktas Tugce, Maillard Pierre V., Layard-Liesching Hillary, Verp Sonia, Marquis Julien et al., 2010/01. Nature, 463 (7278) pp. 237-240.
[DOI][Pmid][serval:BIB_1912A1F4887B]
2009
 
Rescue of a severe mouse model for spinal muscular atrophy by U7 snRNA-mediated splicing modulation.
Meyer Kathrin, Marquis Julien, Trub Judith, Nlend Nlend Rachel, Verp Sonia, Ruepp Marc-David, Imboden Hans, Barde Isabelle, Trono Didier, Schumperli Daniel, 2009/02. Human molecular genetics, 18 (3) pp. 546-555.
[DOI][Pmid][serval:BIB_BD74D6C000A6]
 
Doxycycline-controlled splicing modulation by regulated antisense U7 snRNA expression cassettes.
Marquis J., Kampfer S. S., Angehrn L., Schumperli D., 2009/01. Gene therapy, 16 (1) pp. 70-77.
[DOI][Pmid][serval:BIB_5BE9407A098B]
2007
 
Spinal muscular atrophy: SMN2 pre-mRNA splicing corrected by a U7 snRNA derivative carrying a splicing enhancer sequence.
Marquis Julien, Meyer Kathrin, Angehrn Larissa, Kampfer Sacha S., Rothen-Rutishauser Barbara, Schumperli Daniel, 2007/08. Molecular therapy : the journal of the American Society of Gene Therapy, 15 (8) pp. 1479-1486.
[DOI][Pmid][serval:BIB_A5C5FF46672E]
 
Spinal muscular atrophy: position and functional importance of the branch site preceding SMN exon 7.
Scholl Raphael, Marquis Julien, Meyer Kathrin, Schumperli Daniel, 2007/03. RNA biology, 4 (1) pp. 34-37.
[DOI][Pmid][serval:BIB_7D872A54B6EA]
2006
 
CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding.
Marquis Julien, Paillard Luc, Audic Yann, Cosson Bertrand, Danos Olivier, Le Bec Christine, Osborne H. Beverley, 2006/12. The Biochemical journal, 400 (2) pp. 291-301.
[DOI][Pmid][serval:BIB_1B4420D53754]
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