Massimo Andreatta

Publications | Phd and Masters theses

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16 publications

En préparation
 
NFAT5 induction by the tumor microenvironment enforces CD8 T cell exhaustion
Tillé Laure, Cropp Daniela, Bodley Gabrielle, Andreatta Massimo, Charmoy Mélanie, Crespo Isaac, Nassiri Sina, Lourenco Joao, Leblond Marine, Lopez-Rodriguez Cristina et al..
[DOI][serval:BIB_3D15B154D604]
2024
 
IL-10-expressing CAR T cells resist dysfunction and mediate durable clearance of solid tumors and metastases.
Zhao Y., Chen J., Andreatta M., Feng B., Xie Y.Q., Wenes M., Wang Y., Gao M., Hu X., Romero P. et al., 2024/11. Nature biotechnology, 42 (11) pp. 1693-1704. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3468BE259407]
Semi-supervised integration of single-cell transcriptomics data.
Andreatta M., Hérault L., Gueguen P., Gfeller D., Berenstein A.J., Carmona S.J., 2024/01/29. Nature communications, 15 (1) p. 872. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4C01949C6C2]
2023
Activation of the transcription factor NFAT5 in the tumor microenvironment enforces CD8+ T cell exhaustion.
Tillé L., Cropp D., Charmoy M., Reichenbach P., Andreatta M., Wyss T., Bodley G., Crespo I., Nassiri S., Lourenco J. et al., 2023/10. Nature immunology, 24 (10) pp. 1645-1653. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9B944FAF7B77]
T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps.
Andreatta M., Gueguen P., Borcherding N., Carmona S.J., 2023/08/20. Bio-protocol, 13 (16) pp. e4735. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5A2CCFDDD06A]
A CSF-1R-blocking antibody/IL-10 fusion protein increases anti-tumor immunity by effectuating tumor-resident CD8<sup>+</sup> T cells.
Chang Y.W., Hsiao H.W., Chen J.P., Tzeng S.F., Tsai C.H., Wu C.Y., Hsieh H.H., Carmona S.J., Andreatta M., Di Conza G. et al., 2023/08/15. Cell reports. Medicine, 4 (8) p. 101154. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_21D296C123A7]
Orthogonal cytokine engineering enables novel synthetic effector states escaping canonical exhaustion in tumor-rejecting CD8+ T cells.
Corria-Osorio J., Carmona S.J., Stefanidis E., Andreatta M., Ortiz-Miranda Y., Muller T., Rota I.A., Crespo I., Seijo B., Castro W. et al., 2023/05. Nature immunology, 24 (5) pp. 869-883. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B6529135A8DD]
2022
A CD4+ T cell reference map delineates subtype-specific adaptation during acute and chronic viral infections.
Andreatta M., Tjitropranoto A., Sherman Z., Kelly M.C., Ciucci T., Carmona S.J., 2022/07/13. eLife, 11 pp. e76339. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B25A9B1D7B9]
 
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis.
Biermann J., Melms J.C., Amin A.D., Wang Y., Caprio L.A., Karz A., Tagore S., Barrera I., Ibarra-Arellano M.A., Andreatta M. et al., 2022/07/07. Cell, 185 (14) pp. 2591-2608.e30. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_10AEEAB455A8]
scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.
Andreatta M., Berenstein A.J., Carmona S.J., 2022/04/28. Bioinformatics, 38 (9) pp. 2642-2644. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_241F222A7909]
SPICA: Swiss portal for immune cell analysis.
Andreatta M., David FPA, Iseli C., Guex N., Carmona S.J., 2022/01/07. Nucleic acids research, 50 (D1) pp. D1109-D1114. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1425D341196A]
Low-Dose Radiotherapy Reverses Tumor Immune Desertification and Resistance to Immunotherapy.
Herrera F.G., Ronet C., Ochoa de Olza M., Barras D., Crespo I., Andreatta M., Corria-Osorio J., Spill A., Benedetti F., Genolet R. et al., 2022/01. Cancer discovery, 12 (1) pp. 108-133. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D82928F3BB2B]
2021
Interpretation of T cell states from single-cell transcriptomics data using reference atlases.
Andreatta M., Corria-Osorio J., Müller S., Cubas R., Coukos G., Carmona S.J., 2021/05/20. Nature communications, 12 (1) p. 2965. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BE1D257DF142]
STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.
Andreatta M., Carmona S.J., 2021/05/05. Bioinformatics, 37 (6) pp. 882-884. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D3F01C447F08]
UCell: Robust and scalable single-cell gene signature scoring.
Andreatta M., Carmona S.J., 2021. Computational and structural biotechnology journal, 19 pp. 3796-3798. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ADC3FAC598DC]
2020
Projecting single-cell transcriptomics data onto a reference T cell atlas to interpret immune responses
Andreatta Massimo, Corria-Osorio Jesus, Müller Sören, Cubas Rafael, Coukos George, Carmona Santiago J., 2020/06/24..
[URN][DOI][serval:BIB_2A40AFE9A2C6]
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