Giancarlo Croce

Publications | Phd and Masters theses

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14 publications

2024 | 2023 | 2022 | 2020 | 2019 |
2024
Deep learning predictions of TCR-epitope interactions reveal epitope-specific chains in dual alpha T cells.
Croce G., Bobisse S., Moreno D.L., Schmidt J., Guillame P., Harari A., Gfeller D., 2024/04/13. Nature communications, 15 (1) p. 3211. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5F1F27C4B8D4]
2023
 
Deep learning predictions of TCR-epitope interactions reveal epitope-specific chains in dual alpha T cells
Giancarlo Croce, Sara Bobisse, Dana Léa Moreno, Julien Schmidt, Philippe Guillame, Alexandre Harari, David Gfeller, 2023/09/16..
[DOI][serval:BIB_0A68625521D8]
Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes.
Racle J., Guillaume P., Schmidt J., Michaux J., Larabi A., Lau K., Perez MAS, Croce G., Genolet R., Coukos G. et al., 2023/06/13. Immunity, 56 (6) pp. 1359-1375.e13. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9BA5A00EAA19]
Improved predictions of antigen presentation and TCR recognition with MixMHCpred2.2 and PRIME2.0 reveal potent SARS-CoV-2 CD8(+ )T-cell epitopes.
Gfeller D., Schmidt J., Croce G., Guillaume P., Bobisse S., Genolet R., Queiroz L., Cesbron J., Racle J., Harari A., 2023/01/18. Cell systems, 14 (1) pp. 72-83.e5. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_53359DC7F7C1]
2022
Both APRIL and antibody-fragment-based CAR T cells for myeloma induce BCMA downmodulation by trogocytosis and internalization
Camviel Nicolas, Wolf Benita, Croce Giancarlo, Gfeller David, Zoete Vincent, Arber Caroline, 2022/11. Journal for ImmunoTherapy of Cancer, 10 (11) pp. e005091. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F15484E457D0]
 
Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes.
Vigué L., Croce G., Petitjean M., Ruppé E., Tenaillon O., Weigt M., 2022/07/12. Nature communications, 13 (1) p. 4030. Peer-reviewed.
[DOI][Pmid][serval:BIB_41654EAEAB53]
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes.
Rodriguez-Rivas J., Croce G., Muscat M., Weigt M., 2022/01/25. Proceedings of the National Academy of Sciences of the United States of America, 119 (4) pp. e2113118119. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_905A8698EB11]
 
Predictions of immunogenicity reveal potent SARS-CoV-2 CD8+ T-cell epitopes
Gfeller David, Schmidt Julien, Croce Giancarlo, Guillaume Philippe, Bobisse Sara, Genolet Raphael, Queiroz Lise, Cesbron Julien, Racle Julien, Harari Alexandre, 2022..
[DOI][serval:BIB_97E1B8EF6136]
 
Rapid BCMA downmodulation on myeloma cells upon CAR T cell contact is mediated by trogocytosis and BCMA internalization
Camviel Nicolas, Wolf Benita, Croce Giancarlo, Gfeller David, Zoete Vincent, Arber Caroline, 2022..
[DOI][serval:BIB_E6BCA77B5445]
2020
 
FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution.
Muscat M., Croce G., Sarti E., Weigt M., 2020/10. PLoS computational biology, 16 (10) pp. e1007621. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E83F9F5B7B12]
2019
 
FilterDCA: interpretable supervised contact prediction using inter-domain coevolution
Muscat Maureen, Croce Giancarlo, Sarti Edoardo, Weigt Martin, 2019/12/24..
[DOI][serval:BIB_4B2FE8311090]
 
Adaptive cluster expansion for Ising spin models
Cocco Simona, Croce Giancarlo, Zamponi Francesco, 2019/11. The European Physical Journal B, 92 (11).
[DOI][WoS][serval:BIB_3A74A99929FC]
 
A multi-scale coevolutionary approach to predict interactions between protein domains.
Croce G., Gueudré T., Ruiz Cuevas M.V., Keidel V., Figliuzzi M., Szurmant H., Weigt M., 2019/10. PLoS computational biology, 15 (10) pp. e1006891. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9F0D5311B690]
 
A multi-scale coevolutionary approach to predict interactions between protein domains
Croce Giancarlo, Gueudré Thomas, Cuevas Maria Virginia Ruiz, Keidel Victoria, Figliuzzi Matteo, Szurmant Hendrik, Weigt Martin, 2019..
[DOI][serval:BIB_A84F9B546DB9]
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