Jean Louis Raisaro

Publications | Phd and Masters theses

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36 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 |
2024
Accelerating Clinical Text Annotation in Underrepresented Languages: A Case Study on Text De-Identification
Xu He A., Loftsson Valentin, Kulynych Bogdan, Kaabachi Bayrem, Raisaro Jean Louis, 2024/08/22. pp. 853-857 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_9D47A8BCBA47]
Evaluating Synthetic Data Augmentation to Correct for Data Imbalance in Realistic Clinical Prediction Settings
Wahler Nina, Kaabachi Bayrem, Kulynych Bogdan, Despraz Jérémie, Simon Christian, Raisaro Jean Louis, 2024/08/22. pp. 929-933 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_F4F5679ACFD4]
Tunable Privacy Risk Evaluation of Generative Adversarial Networks
Kaabachi Bayrem, Briki Farah, Kulynych Bogdan, Despraz Jérémie, Raisaro Jean Louis, 2024/08/22. pp. 1233-1237 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_1E8620478EEF]
2023
Correction: The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Nakas C.T., Raisaro J.L., Leichtle A.B., 2023/12/07. Journal of medical Internet research, 25 pp. e54809. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D10A3F7A7AC7]
 
Development of a Predictive Model for Hospital-Acquired Pressure Injuries.
Pouzols S., Despraz J., Mabire C., Raisaro J.L., 2023/11/01. Computers, informatics, nursing, 41 (11) pp. 884-891. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9BAB8C75537C]
The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Theodoros Naka C., Raisaro J.L., Leichtle A.B., 2023/10/18. Journal of medical Internet research, 25 pp. e47254. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2525DF90BB64]
The Statistical Analysis of the Varying Brain.
Chén Oliver Y., Thanh Vũ Duy, Greub Gilbert, Cao Hengyi, He Xingru, Muller Yannick, Petrovas Constantinos, Shou Haochang, Nguyen Viet-Dung, Zhi Bangdong et al., 2023/07/02. IEEE Statistical Signal Processing (SSP). Peer-reviewed.
[URN][DOI][WoS][serval:BIB_C6B3B6AA1F8B]
FAIRification of health-related data using semantic web technologies in the Swiss Personalized Health Network.
Touré V., Krauss P., Gnodtke K., Buchhorn J., Unni D., Horki P., Raisaro J.L., Kalt K., Teixeira D., Crameri K. et al., 2023/03/10. Scientific data, 10 (1) p. 127. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FDF148812F2]
An End-to-End Natural Language Processing Application for Prediction of Medical Case Coding Complexity: Algorithm Development and Validation.
Xu H.A., Maccari B., Guillain H., Herzen J., Agri F., Raisaro J.L., 2023/01/19. JMIR medical informatics, 11 pp. e38150. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7EA8C0FFC35]
2022
 
Cohort Profile: Swiss BioRef: The building blocks of a nationwide IT infrastructure in Switzerland for generating precise reference intervals
Blatter Tobias U., Witte Harald, Fasquelle-Lopez Jules, Raisaro Jean Louis, Leichtle Alexander B., 2022/08/31..
[DOI][serval:BIB_49A8D897D896]
An Ontology and Data Converter from RDF to the i2b2 Data Model
Fasquelle-Lopez Jules, Louis Raisaro Jean, 2022/05/25. pp. 372-376 dans Challenges of Trustable AI and Added-Value on Health, IOS Press.
[URN][DOI][Pmid][serval:BIB_72539EF61E24]
Generation and Evaluation of Synthetic Data in a University Hospital Setting
Kaabachi Bayrem, Despraz Jérémie, Meurers Thierry, Prasser Fabian, Raisaro Jean Louis, 2022/05/25. pp. 141-142 dans Challenges of Trustable AI and Added-Value on Health, IOS Press.
[URN][DOI][Pmid][serval:BIB_FF74F4A9D504]
2021
Author Correction: Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption
Froelicher David, Troncoso-Pastoriza Juan R., Raisaro Jean Louis, Cuendet Michel A., Sousa Joao Sa, Cho Hyunghoon, Berger Bonnie, Fellay Jacques, Hubaux Jean-Pierre, 2021/12. Nature Communications, 12 (1). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BA7A4545F831]
Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption.
Froelicher D., Troncoso-Pastoriza J.R., Raisaro J.L., Cuendet M.A., Sousa J.S., Cho H., Berger B., Fellay J., Hubaux J.P., 2021/10/11. Nature communications, 12 (1) p. 5910. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3683F2C63090]
A National, Semantic-Driven, Three-Pillar Strategy to Enable Health Data Secondary Usage Interoperability for Research Within the Swiss Personalized Health Network: Methodological Study.
Gaudet-Blavignac C., Raisaro J.L., Touré V., Österle S., Crameri K., Lovis C., 2021/06/24. JMIR medical informatics, 9 (6) pp. e27591. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_85D2A336EDD4]
 
Citizen-centered, auditable and privacy-preserving population genomics.
Grishin D., Raisaro J.L., Troncoso-Pastoriza J.R., Obbad K., Quinn K., Misbach M., Gollhardt J., Sa J., Fellay J., Church G.M. et al., 2021/03. Nature computational science, 1 (3) pp. 192-198. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C0580E5093AA]
Revolutionizing Medical Data Sharing Using Advanced Privacy-Enhancing Technologies: Technical, Legal, and Ethical Synthesis.
Scheibner J., Raisaro J.L., Troncoso-Pastoriza J.R., Ienca M., Fellay J., Vayena E., Hubaux J.P., 2021/02/25. Journal of medical Internet research, 23 (2) pp. e25120. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E2683B6181C3]
2020
SCOR: A secure international informatics infrastructure to investigate COVID-19.
Raisaro J.L., Marino F., Troncoso-Pastoriza J., Beau-Lejdstrom R., Bellazzi R., Murphy R., Bernstam E.V., Wang H., Bucalo M., Chen Y. et al., 2020/11/01. Journal of the American Medical Informatics Association, 27 (11) pp. 1721-1726. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7D30526235EB]
GenoShare: Supporting Privacy-Informed Decisions for Sharing Individual-Level Genetic Data.
Raisaro J.L., Troncoso-Pastoriza J.R., El-Zein Y., Humbert M., Troncoso C., Fellay J., Hubaux J.P., 2020/06/16. pp. 238-241 dans Digital Personalized Health and Medicine, IOS Press.
[URN][DOI][WoS][Pmid][serval:BIB_E4D4CB80455C]
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery.
Raisaro J.L., Troncoso-Pastoriza J.R., Pradervand S., Cuendet M., Misbach M., Sa J., Marino F., Freundler N., Rosat N., Cavin D. et al., 2020/06/16. pp. 1161-1162 dans Digital Personalized Health and Medicine, IOS Press.
[URN][DOI][Pmid][serval:BIB_3077196DA0EB]
MedCo2: Privacy-Preserving Cohort Exploration and Analysis.
Froelicher David, Mickaël Misbach, Troncoso-Pastoriza Juan Ramon, Raisaro Jean Louis, Hubaux Jean-Pierre, 2020/06/01. pp. 317-321 dans Digital Personalized Health and Medicine, IOS Press.
[URN][DOI][Pmid][serval:BIB_D0C4C9C55DD4]
Data protection and ethics requirements for multisite research with health data: a comparative examination of legislative governance frameworks and the role of data protection technologies.
Scheibner J., Ienca M., Kechagia S., Troncoso-Pastoriza J.R., Raisaro J.L., Hubaux J.P., Fellay J., Vayena E., 2020. Journal of law and the biosciences, 7 (1) pp. lsaa010. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E81CB33F863F]
2019
 
MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data
Raisaro Jean Louis, Troncoso-Pastoriza Juan Ramon, Misbach Mickael, Sousa Joao Sa, Pradervand Sylvain, Missiaglia Edoardo, Michielin Olivier, Ford Bryan, Hubaux Jean-Pierre, 2019/07/01. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16 (4) pp. 1328-1341. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EB26A9E809D5]
2018
 
Are privacy-enhancing technologies for genomic data ready for the clinic? A survey of medical experts of the Swiss HIV Cohort Study.
Raisaro J.L., McLaren P.J., Fellay J., Cavassini M., Klersy C., Hubaux J.P., Swiss HIV Cohort Study, 2018/03. Journal of biomedical informatics, 79 pp. 1-6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA11676A72A9]
Feasibility of Homomorphic Encryption for Sharing I2B2 Aggregate-Level Data in the Cloud.
Raisaro J.L., Klann J.G., Wagholikar K.B., Estiri H., Hubaux J.P., Murphy S.N., 2018. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2017 pp. 176-185. Peer-reviewed.
[URN][Pmid][serval:BIB_FDEFCDEC84BD]
 
Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy.
Raisaro J.L., Gwangbae Choi, Pradervand S., Colsenet R., Jacquemont N., Rosat N., Mooser V., Hubaux J.P., 2018. IEEE/ACM transactions on computational biology and bioinformatics, 15 (5) pp. 1413-1426. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_77895CA6B07B]
2017
 
UnLynx: A Decentralized System for Privacy-Conscious Data Sharing
Froelicher David, Egger Patricia, Sousa João Sá, Raisaro Jean Louis, Huang Zhicong, Mouchet Christian, Ford Bryan, Hubaux Jean-Pierre, 2017/10/01. Proceedings on Privacy Enhancing Technologies, 2017 (4) pp. 232-250. Peer-reviewed.
[DOI][serval:BIB_B0D7721A18A6]
Efficient and secure outsourcing of genomic data storage.
Sousa J.S., Lefebvre C., Huang Z., Raisaro J.L., Aguilar-Melchor C., Killijian M.O., Hubaux J.P., 2017/07/26. BMC medical genomics, 10 (Suppl 2) p. 46. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_33015E73AFE3]
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
Raisaro J.L., Tramèr F., Ji Z., Bu D., Zhao Y., Carey K., Lloyd D., Sofia H., Baker D., Flicek P. et al., 2017/07/01. Journal of the American Medical Informatics Association, 24 (4) pp. 799-805. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B1775430E24D]
2016
Privacy-preserving genomic testing in the clinic: a model using HIV treatment.
McLaren P.J., Raisaro J.L., Aouri M., Rotger M., Ayday E., Bartha I., Delgado M.B., Vallet Y., Günthard H.F., Cavassini M. et al., 2016/08. Genetics in medicine, 18 (8) pp. 814-822. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C52D051D158A]
2015
 
Privacy Threats and Practical Solutions for Genetic Risk Tests
Barman Ludovic, Elgraini Mohammed-Taha, Raisaro Jean Louis, Hubaux Jean-Pierre, Ayday Erman, 2015/05. dans 2015 IEEE Security and Privacy Workshops. Peer-reviewed, IEEE.
[DOI][serval:BIB_8DDC312D0DF5]
2014
 
Patient privacy in the genomic era.
Raisaro J.L., Ayday E., Hubaux J.P., 2014/05/07. Praxis, 103 (10) pp. 579-586. Peer-reviewed.
[DOI][Pmid][serval:BIB_73FA5E278D80]
 
Privacy-Preserving Processing of Raw Genomic Data
Ayday Erman, Raisaro Jean Louis, Hengartner Urs, Molyneaux Adam, Hubaux Jean-Pierre, 2014. pp. 133-147 dans Data Privacy Management and Autonomous Spontaneous Security, Springer Berlin Heidelberg.
[DOI][serval:BIB_E50F64F54A6C]
2013
 
Personal use of the genomic data: Privacy vs. storage cost
Ayday Erman, Raisaro Jean Louis, Hubaux Jean-Pierre, 2013/12. dans 2013 IEEE Global Communications Conference (GLOBECOM). Peer-reviewed, IEEE.
[DOI][serval:BIB_FF4AEBDCF4F9]
 
Protecting and evaluating genomic privacy in medical tests and personalized medicine
Ayday Erman, Raisaro Jean Louis, Hubaux Jean-Pierre, Rougemont Jacques, 2013/11/04. dans Proceedings of the 12th ACM workshop on Workshop on privacy in the electronic society. Peer-reviewed, ACM.
[DOI][serval:BIB_D5DF60F60F90]
 
Privacy-Preserving Computation of Disease Risk by Using Genomic, Clinical, and Environmental Data
Ayday Erman, Raisaro Jean Louis, McLaren Paul J, Fellay Jacques, Hubaux Jean-Pierre, 2013. dans Proceedings of the 2013 USENIX Conference on Safety, Security, Privacy and Interoperability of Health Information Technologies. Peer-reviewed.
[serval:BIB_048635477FF8]
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