Patrick Basset

Publications | Phd and Masters theses

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51 publications

2024 | 2022 | 2021 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2003 | 2001 |
2024
Value of DNA mixture-to-mixture comparisons within an operational context.
Basset P., Toulemont L., Hicks T., Castella V., 2024/11. Forensic science international. Genetics, 73 p. 103110. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B8D6F7135518]
2022
A simplified protocol for the detection of blood, saliva, and semen from a single biological trace using immunochromatographic tests.
Basset P., Blandin P., Grini A., Delemont S., Samie L., Castella V., 2022/06. Forensic science, medicine, and pathology, 18 (2) pp. 141-148. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_453BF01D6C6F]
Use of Bayesian Networks for the investigation of the nature of biological material in casework.
Samie L., Champod C., Delémont S., Basset P., Hicks T., Castella V., 2022/02. Forensic science international, 331 p. 111174. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2E76CAA88C08]
2021
A Swiss collaborative exercise for Disaster Victim Identification (DVI): Covering situations with different levels of complexity.
Gehrig C., Delémont S., Comte J., Hicks T., Basset P., Grosjean F., Dion D., Cossu C., Bottinelli M., Hecht M. et al., 2021/10. Journal of forensic and legal medicine, 83 p. 102254. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6357476DAAF3]
2019
 
Gene Flow Between Chromosomal Races and Species
Yannic G., Basset P., Horn A., Hausser J., 2019/02/28. pp. 313-335 dans Shrews, Chromosomes and Speciation chap. 9, Cambridge University Press.
[DOI][serval:BIB_20DE8EF97EBC]
 
Is It Really the Chromosomes?
Basset P., Yannic G., Hausser J., 2019/02/28. pp. 365-383 dans Shrews, Chromosomes and Speciation chap. 11, Cambridge University Press.
[DOI][serval:BIB_68097C6D82EE]
Positive impact of DNA contamination minimization procedures taken within the laboratory.
Basset P., Castella V., 2019/01. Forensic science international. Genetics, 38 pp. 232-235. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0489963A1FB3]
2018
Lessons from a study of DNA contaminations from police services and forensic laboratories in Switzerland.
Basset P., Castella V., 2018/03. Forensic science international. Genetics, 33 pp. 147-154. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F05DA40ACF83]
2017
The Evolution and Dynamics of Methicillin-Resistant Staphylococcus aureus
Abdelbary MMH, Basset P., Blanc DS, Feil EJ, 2017. pp. 553-572 dans Genetics and Evolution of Infectious Diseases chap. 24, Elsevier.
[URN][DOI][serval:BIB_8173144CC9E4]
2016
New genotyping method discovers sustained nosocomial Pseudomonas aeruginosa outbreak in an intensive care burn unit.
Tissot F., Blanc D.S., Basset P., Zanetti G., Berger M.M., Que Y.A., Eggimann P., Senn L., 2016/09. The Journal of hospital infection, 94 (1) pp. 2-7.
[URN][DOI][Pmid][serval:BIB_8FB4BF675C6C]
Development and evaluation of double locus sequence typing for molecular epidemiological investigations of Clostridium difficile.
Stojanov M., Magalhaes B., Terletsky V., Basset P., Prod'hom G., Greub G., Senn L., Blanc D.S., 2016. European Journal of Clinical Microbiology and Infectious Diseases, 35 (2) pp. 175-181. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C4315A6F47A8]
The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus.
Senn L., Clerc O., Zanetti G., Basset P., Prod'hom G., Gordon N.C., Sheppard A.E., Crook D.W., James R., Thorpe H.A. et al., 2016. Mbio, 7 (1) pp. e02039-e02015. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1F20E6F932C9]
2015
Changing molecular epidemiology of methicillin-resistant Staphylococcus aureus in an Algerian hospital.
Basset P., Amhis W., Blanc D.S., 2015. Journal of Infection In Developing Countries, 9 (2) pp. 206-209. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4F228658C24]
2014
Fast and simple epidemiological typing of Pseudomonas aeruginosa using the double-locus sequence typing (DLST) method.
Basset P., Blanc D.S., 2014. European Journal of Clinical Microbiology and Infectious Diseases, 33 (6) pp. 927-932.
[URN][DOI][WoS][Pmid][serval:BIB_BD0B0D52008D]
2013
 
High genetic diversity of Staphylococcus aureus in a tertiary care hospital in Southwest Nigeria.
Raji A., Ojemhen O., Umejiburu U., Ogunleye A., Blanc D.S., Basset P., 2013. Diagnostic Microbiology and Infectious Disease, 77 (4) pp. 367-369.
[DOI][WoS][Pmid][serval:BIB_73F6CD601821]
Molecular epidemiology of methicillin-resistant Staphylococcus aureus in Switzerland: sampling only invasive isolates does not allow a representative description of the local diversity of clones.
Senn L., Basset P., Greub G., Prod'hom G., Frei R., Zbinden R., Gaia V., Balmelli C., Pfyffer G.E., Mühlemann K. et al., 2013. Clinical Microbiology and Infection, 19 (7) pp. E288-E290. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A51F72C7DD61]
Very low prevalence of meticillin-resistant Staphylococcus aureus carrying the mecC gene in western Switzerland.
Basset P., Prod'hom G., Senn L., Greub G., Blanc D.S., 2013. Journal of Hospital Infection, 83 (3) pp. 257-259. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BB46D56C7C35]
2012
Which anatomical sites should be sampled for screening of methicillin-resistant Staphylococcus aureus carriage by culture or by rapid PCR test?
Senn L., Basset P., Nahimana I., Zanetti G., Blanc D.S., 2012/02. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 18 (2) pp. E31-3. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C5CE7045D293]
 
Chromosomal rearrangements do not seem to affect the gene flow in hybrid zones between karyotypic races of the common shrew (Sorex araneus).
Horn A., Basset P., Yannic G., Banaszek A., Borodin P.M., Bulatova N.S., Jadwiszczak K., Jones R.M., Polyakov A.V., Ratkiewicz M. et al., 2012. Evolution, 66 (3) pp. 882-889.
[DOI][WoS][Pmid][serval:BIB_5DCD2621FDA5]
 
Evaluation of adding a second marker to overcome Staphylococcus aureus spa typing homoplasies.
Basset P., Nübel U., Witte W., Blanc D.S., 2012. Journal of Clinical Microbiology, 50 (4) pp. 1475-1477. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_645B864AB800]
Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha), Sorex antinorii (Mammalia: Soricomorpha)
Yannic G., Pellissier L., Dubey S., Vega R., Basset P., Mazzotti S., Pecchioli E., Vernesi C., Hauffe H.C., Searle J.B. et al., 2012. Biological Journal of the Linnean Society, 105 (4) pp. 864-880.
[URN][DOI][WoS][serval:BIB_338D7D956ECB]
 
Scale-specific sex-biased dispersal in the Valais shrew unveiled by genetic variation on the Y chromosome, autosomes, and mitochondrial DNA.
Yannic G., Basset P., Büchi L., Hausser J., Broquet T., 2012. Evolution, 66 (6) pp. 1737-1750.
[DOI][WoS][Pmid][serval:BIB_BDA59794B12B]
Short term evolution of a highly transmissible methicillin-resistant Staphylococcus aureus clone (ST228) in a tertiary care hospital.
Vogel V., Falquet L., Calderon-Copete S.P., Basset P., Blanc D.S., 2012. Plos One, 7 (6) pp. e38969. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1CF24BEEF754]
2011
 
DNA microarray analysis reveals variability of accessory genes among isolates recovered during an MRSA outbreak
Basset P., Monecke S., Blanc D., 2011. pp. P178 dans International Conference on Prevention & Infection Control (ICPIC 2011), BMC Proceedings.
[DOI][serval:BIB_50DA492D322E]
 
High proportion of wrongly identified methicillin-resistant Staphylococcus aureus carriers by use of a rapid commercial PCR assay due to presence of staphylococcal cassette chromosome element lacking the mecA gene.
Blanc D.S., Basset P., Nahimana-Tessemo I., Jaton K., Greub G., Zanetti G., 2011. Journal of Clinical Microbiology, 49 (2) pp. 722-724. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_28CF0FF1F386]
 
Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination.
Geraldes A., Basset P., Smith K.L., Nachman M.W., 2011. Molecular Ecology, 20 (22) pp. 4722-4736. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AB2CFFE0E8D3]
 
Investigation of classical epidemiological links between patients harbouring identical, non-predominant meticillin-resistant Staphylococcus aureus genotypes and lessons for epidemiological tracking.
Senn L., Zanetti G., Bally F., Chuard C., Cometta A., Burr M., Eisenring M.C., Basset P., Blanc D.S., 2011. Journal of Hospital Infection, 79 (3) pp. 202-205.
[DOI][WoS][Pmid][serval:BIB_F177C90CA430]
 
The evolution and dynamics of methicillin-resistant Staphylococus aureus
Basset P., Feil E.J., Zanetti. G. , Blanc D.S., 2011. pp. 669-688 dans Tibayrenc M. (eds.) Genetics and Evolution of Infectious Diseases chap. 25, Elselvier.
[serval:BIB_2EA9EFA76D5D]
 
Unprecedented nosocoimal spread os vancomycin-resistant Enterococcus faecium in a tertiary-care hospital in Switzerland
Senn L., Petignat C., Prod'hom G., Greub G., Basset P., Blanc DS, Zanetti G., 2011. pp. P22 dans International Conference on Prevention & Infection Control (ICPIC 2011), BMC Proceedings.
[DOI][serval:BIB_AE09CAEC3791]
 
Which anatomical sites should be sampled for screening of MRSA carriage by culture or by rapid PCR test?
Blanc DS, Senn L., Nahimana I., Basset P., Zanetti G., 2011. pp. O83 dans International Conference on Prevention & Infection Control (ICPIC 2011), BMC Proceedings.
[URN][DOI][serval:BIB_0DA01A833483]
2010
 
Impact of recombination on genetic variability within Staphylococcus aureus clonal complexes.
Basic-Hammer N., Vogel V., Basset P., Blanc D.S., 2010/10. Infection, Genetics and Evolution, 10 (7) pp. 1117-1123. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_80DBBCB5B62E]
Additional data for nuclear DNA give new insights into the phylogenetic position of Sorex granarius within the Sorex araneus group.
Yannic G., Dubey S., Hausser J., Basset P., 2010. Molecular Phylogenetics and Evolution, 57 (3) pp. 1062-1071.
[URN][DOI][WoS][Pmid][serval:BIB_B5D2B73AC0EB]
 
Diversity of staphylococcal cassette chromosome mec elements in predominant methicillin-resistant Staphylococcus aureus clones in a small geographic area.
Basset P., Senn L., Vogel V., Zanetti G., Blanc D.S., 2010. Antimicrobial Agents and Chemotherapy, 54 (11) pp. 4589-4595. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_64AD5F769E34]
 
High diversity of PVL-positive methicillin-resistant Staphylococcus aureus in western Switzerland, 2005-2009
Senn L., Basset P., Bellini C., Zanetti G., Blanc D., 2010. pp. S278-S279 dans 20th European Congress of Clinical Microbiology and Infectious (ECCMID), Clinical Microbiology and Infection. Peer-reviewed.
[serval:BIB_D64F9D7CD4DB]
 
Local acquisition of methicillin-resistance in predominant Staphylococcus aureus clones of western Switzerland.
Basset P., Senn L., Vogel V., Zanetti G., Blanc D., 2010. pp. S290 dans 20th European Congress of Clinical Microbiology and Infectious (ECCMID), Clinical Microbiology and Infection. Peer-reviewed.
[serval:BIB_8CAD31126671]
 
Usefulness of double locus sequence typing (DLST) for regional and international epidemiological surveillance of methicilin-resistant Staphylococcus aureus.
Basset P., Senn L., Prod'hom G., Bille J., Francioli P., Zanetti G., Blanc D.S., 2010. Clinical Microbiology and Infection, 16 (8) pp. 1289-1296. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_52DCE299B052]
2009
 
Chromosomal rearrangements and gene flow over time in an inter-specific hybrid zone of the Sorex araneus group.
Yannic G., Basset P., Hausser J., 2009. Heredity, 102 (6) pp. 616-625. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_41662EC6C44B]
 
Cooccurrence of predominant Panton-Valentine leukocidin-positive sequence type (ST) 152 and multidrug-resistant ST 241 Staphylococcus aureus clones in Nigerian hospitals.
Okon K.O., Basset P., Uba A., Lin J., Oyawoye B., Shittu A.O., Blanc D.S., 2009. Journal of Clinical Microbiology, 47 (9) pp. 3000-3003.
[DOI][WoS][Pmid][serval:BIB_EC7428FC25E9]
 
Staphylococcus aureus clfB and spa alleles of the repeat regions are segregated into major phylogenetic lineages.
Basset P., Hammer N.B., Kuhn G., Vogel V., Sakwinska O., Blanc D.S., 2009. Infection, genetics and evolution, 9 (5) pp. 941-947.
[DOI][WoS][Pmid][serval:BIB_8A35A6797D66]
2008
 
A hybrid zone with coincident clines for autosomal and sex-specific markers in the Sorex araneus group.
Yannic G., Basset P., Hausser J., 2008. Journal of Evolutionary Biology, 21 (3) pp. 658-667.
[DOI][WoS][Pmid][serval:BIB_67C3FBB90DAA]
 
A new perspective on the evolutionary history of western European Sorex araneus group revealed by paternal and maternal molecular markers.
Yannic G., Basset P., Hausser J., 2008. Molecular Phylogenetics and Evolution, 47 (1) pp. 237-250. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C790AE584B7E]
 
Chromosomal rearrangements and genetic structure at different evolutionary levels of the Sorex araneus group.
Basset P., Yannic G., Hausser J., 2008. Journal of Evolutionary Biology, 21 (3) pp. 842-852.
[DOI][WoS][Pmid][serval:BIB_617E0725310F]
 
Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes.
Geraldes A., Basset P., Gibson B., Smith K.L., Harr B., Yu H.T., Bulatova N., Ziv Y., Nachman M.W., 2008. Molecular Ecology, 17 (24) pp. 5349-5363. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C7AC368CF1CD]
 
Phylogeography and recolonization of the Swiss Alps by the Valais shrew (Sorex antinorii), inferred with autosomal and sex-specific markers.
Yannic G., Basset P., Hausser J., 2008. Molecular Ecology, 17 (18) pp. 4118-4133. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E8F28BF9E7CB]
2007
 
Using a Bayesian method to assign individuals to karyotypic taxa in shrew hybrid zones.
Basset P., Yannic G., Brunner H., Hausser J., 2007. Cytogenetic and Genome Research, 116 (4) pp. 282-288.
[DOI][WoS][Pmid][serval:BIB_593232846D3D]
2006
Restricted gene flow at specific parts of the shrew genome in chromosomal hybrid zones
Basset P., Yannic G., Brünner H., Hausser J., 2006/08. Evolution, 80 (8) pp. 1718-1730.
[serval:BIB_8BE0D0503F13]
Chromosome localization of microsatellite markers in the shrews of the Sorex araneus group.
Basset P., Yannic G., Yang F., O'Brien P.C., Graphodatsky A.S., Ferguson-Smith M.A., Balmus G., Volobouev V.T., Hausser J., 2006. Chromosome Research, 14 (3) pp. 253-262.
[URN][DOI][WoS][Pmid][serval:BIB_A4EA17CD0F25]
 
Genetic and karyotypic structure in the shrews of the Sorex araneus group: are they independent?
Basset P., Yannic G., Hausser J., 2006. Molecular Ecology, 15 (6) pp. 1577-1587.
[DOI][WoS][Pmid][serval:BIB_A1D658186A68]
2003
 
Identification of three Sorex species with microsatellite markers
Basset P., Hausser J., 2003. Mammalia, 67 (2) pp. 245-252. Peer-reviewed.
[DOI][WoS][serval:BIB_729C15C61AE1]
 
Postglacial recolonization of the Valais (Switzerland) by the shrew Sorex antinorii: is dispersal sex-biased? A preliminary study.
Fivaz F., Basset P., Lugon-Moulin N., Hausser J., 2003. Mammalia, 67 (2) pp. 253-262.
[DOI][WoS][serval:BIB_F2719A60FA44]
2001
Testing demographic models of effective population size.
Basset P., Balloux F., Perrin N., 2001. Proceedings of the Royal Society of London B Biological Sciences, 268 (1464) pp. 311-317.
[URN][DOI][WoS][Pmid][serval:BIB_7636E371AC14]
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