Clinical Chemistry

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50 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2009 | 2004 |
2024
The Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF.
Klein J., Lam H., Mak T.D., Bittremieux W., Perez-Riverol Y., Gabriels R., Shofstahl J., Hecht H., Binz P.A., Kawano S. et al., 2024/11/19. Analytical chemistry, 96 (46) pp. 18491-18501. Peer-reviewed.
[DOI][Pmid][serval:BIB_24FF52430B58]
 
Rescue of myocytes and locomotion through AAV2/9-2YF intracisternal gene therapy in a rat model of creatine transporter deficiency.
Fernandes-Pires G., Azevedo M.D., Lanzillo M., Roux-Petronelli C., Binz P.A., Cudalbu C., Sandi C., Tenenbaum L., Braissant O., 2024/06/13. Molecular therapy. Methods & clinical development, 32 (2) p. 101251. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_350EDEDB3B0D]
Fetal sex and the relative reactivity of human umbilical vein and arteries are key determinants in potential beneficial effects of phosphodiesterase inhibitors.
Peyter A.C., Beaumann M., Delhaes F., Joye S., Menétrey S., Baud D., Tolsa J.F., 2024/06/01. Journal of applied physiology, 136 (6) pp. 1526-1545. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C62BB3ED910F]
Report from the HarmoSter study: different LC-MS/MS androstenedione, DHEAS and testosterone methods compare well; however, unifying calibration is a double-edged sword.
Fanelli F., Peitzsch M., Bruce S., Cantù M., Temchenko A., Mezzullo M., Lindner J.M., Hawley J.M., Ackermans M.T., Van den Ouweland J. et al., 2024/05/27. Clinical chemistry and laboratory medicine, 62 (6) pp. 1080-1091. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D83302727151]
Sex-specific interactions between stress axis and redox balance are associated with internalizing symptoms and brain white matter microstructure in adolescents.
Schilliger Z., Alemán-Gómez Y., Magnus Smith M., Celen Z., Meuleman B., Binz P.A., Steullet P., Do K.Q., Conus P., Merglen A. et al., 2024/01/17. Translational psychiatry, 14 (1) p. 30. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CCCA37EE5321]
2023
Measuring Salivary Cortisol to Assess the Effect of Natural Environments on Stress Level in Acute Patients With Severe Brain Injuries: An Exploratory Study.
Jöhr J., Martinez T., Marquis R., Bruce S., Binz P.A., Rey S., Hafner G., Attwell C., Diserens K., 2023/09. Cureus, 15 (9) pp. e44878. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6BDDC23F6BE9]
Neurometabolic changes in a rat pup model of type C hepatic encephalopathy depend on age at liver disease onset.
Simicic D., Rackayova V., Braissant O., Toso C., Oldani G., Sessa D., McLin V.A., Cudalbu C., 2023/08. Metabolic brain disease, 38 (6) pp. 1999-2012. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AF6E83A093E9]
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Deutsch E.W., Vizcaíno J.A., Jones A.R., Binz P.A., Lam H., Klein J., Bittremieux W., Perez-Riverol Y., Tabb D.L., Walzer M. et al., 2023/02/03. Journal of proteome research, 22 (2) pp. 287-301. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E21D5E5E845C]
 
Impact of ß-hydroxy-ß-methylbutyrate (HMB) in critically ill patients on the endocrine axis - A post-hoc cohort study of the HMB-ICU trial.
Pantet O., Viana M.V., Engelen MPKJ, Deutz NEP, Gran S., Berger M.M., 2023/02. Clinical nutrition ESPEN, 53 pp. 1-6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1F0E37B45CD2]
Report from the HarmoSter study: inter-laboratory comparison of LC-MS/MS measurements of corticosterone, 11-deoxycortisol and cortisone.
Fanelli F., Bruce S., Cantù M., Temchenko A., Mezzullo M., Lindner J.M., Peitzsch M., Binz P.A., Ackermans M.T., Heijboer A.C. et al., 2023/01/27. Clinical chemistry and laboratory medicine, 61 (1) pp. 67-77. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2C4CB5F7C0A8]
2022
 
Antibody-Coated Wearable Organic Electrochemical Transistors for Cortisol Detection in Human Sweat.
Demuru S., Kim J., El Chazli M., Bruce S., Dupertuis M., Binz P.A., Saubade M., Lafaye C., Briand D., 2022/09/23. ACS sensors, 7 (9) pp. 2721-2731. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B5A17281774F]
PET CMR<sub>glc</sub> mapping and <sup>1</sup>H-MRS show altered glucose uptake and neurometabolic profiles in BDL rats.
Mosso J., Yin T., Poitry-Yamate C., Simicic D., Lepore M., McLin V.A., Braissant O., Cudalbu C., Lanz B., 2022/06/15. Analytical biochemistry, 647 p. 114606. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_36646523A3F6]
Exudative glutamine losses contribute to high needs after burn injury.
Berger M.M., Binz P.A., Roux C., Charrière M., Scaletta C., Raffoul W., Applegate L.A., Pantet O., 2022/05. JPEN. Journal of parenteral and enteral nutrition, 46 (4) pp. 782-788. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_27300263B67D]
 
Obituary for Claude Bachmann, MD (1941–2022).
Batshaw ML, Braissant O., Dionisi-Vici C., Steinmann B., Superti-Furga A., 2022/05. Journal of Inherited Metabolic Disease, 45 (3) pp. 657-658. Peer-reviewed.
[DOI][WoS][serval:BIB_C276F4700419]
Report from the HarmoSter study: impact of calibration on comparability of LC-MS/MS measurement of circulating cortisol, 17OH-progesterone and aldosterone.
Fanelli F., Cantù M., Temchenko A., Mezzullo M., Lindner J.M., Peitzsch M., Hawley J.M., Bruce S., Binz P.A., Ackermans M.T. et al., 2022/04/26. Clinical chemistry and laboratory medicine, 60 (5) pp. 726-739. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7F2248DF6789]
 
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.
LeDuc R.D., Deutsch E.W., Binz P.A., Fellers R.T., Cesnik A.J., Klein J.A., Van Den Bossche T., Gabriels R., Yalavarthi A., Perez-Riverol Y. et al., 2022/04/01. Journal of proteome research, 21 (4) pp. 1189-1195. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E5C613643D8F]
Corrigendum to "Central nervous system and systemic oxidative stress interplay with inflammation in a bile duct ligation rat model of type C hepatic encephalopathy" [Free Radical Biol. Med. 178 (2022) 295-307 ISSN 0891-5849].
Pierzchala K., Simicic D., Sienkiewicz A., Sessa D., Mitrea S., Braissant O., McLin V.A., Gruetter R., Cudalbu C., 2022/03. Free radical biology & medicine, 182 p. 289. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6B4D874AA370]
 
Creatine transporter-deficient rat model shows motor dysfunction, cerebellar alterations, and muscle creatine deficiency without muscle atrophy.
Duran-Trio L., Fernandes-Pires G., Grosse J., Soro-Arnaiz I., Roux-Petronelli C., Binz P.A., De Bock K., Cudalbu C., Sandi C., Braissant O., 2022/03. Journal of inherited metabolic disease, 45 (2) pp. 278-291. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4AD1A62950D0]
 
Central nervous system and systemic oxidative stress interplay with inflammation in a bile duct ligation rat model of type C hepatic encephalopathy.
Pierzchala K., Simicic D., Sienkiewicz A., Sessa D., Mitrea S., Braissant O., McLin V.A., Gruetter R., Cudalbu C., 2022/01. Free radical biology & medicine, 178 pp. 295-307. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EE30A6642E92]
Current and potential new treatment strategies for creatine deficiency syndromes.
Fernandes-Pires G., Braissant O., 2022/01. Molecular genetics and metabolism, 135 (1) pp. 15-26. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_68B2B92FD1A2]
 
Disorders of creatine metabolism
Stöckler-Ipsiroglu Sylvia, Braissant Olivier, Schulze Andreas, 2022. dans Blau Nenad, Dionisi Vici Carlo, Ferreira Carlos R., Vianey-Saban Christine, van Karnebeek Clara D. M. (eds.) Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases, Springer International Publishing.
[DOI][serval:BIB_FA5CBBB104DB]
2021
 
A knock-in rat model unravels acute and chronic renal toxicity in glutaric aciduria type I.
Gonzalez Melo M., Fontana A.O., Viertl D., Allenbach G., Prior J.O., Rotman S., Feichtinger R.G., Mayr J.A., Costanzo M., Caterino M. et al., 2021/12. Molecular genetics and metabolism, 134 (4) pp. 287-300. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_05A57A99C9CF]
 
Probiotics combined with rifaximin influence the neurometabolic changes in a rat model of type C HE.
Flatt E., McLin V.A., Braissant O., Pierzchala K., Mastromarino P., Mitrea S.O., Sessa D., Gruetter R., Cudalbu C., 2021/09/09. Scientific reports, 11 (1) p. 17988. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CB549E4C49B7]
 
Universal Spectrum Identifier for mass spectra.
Deutsch E.W., Perez-Riverol Y., Carver J., Kawano S., Mendoza L., Van Den Bossche T., Gabriels R., Binz P.A., Pullman B., Sun Z. et al., 2021/07. Nature methods, 18 (7) pp. 768-770. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B0EF93B4BE8D]
Classical homocystinuria, is it safe to exercise?
Tankeu A.T., Van Winckel G., Campos-Xavier B., Braissant O., Pedro R., Superti-Furga A., Amati F., Tran C., 2021/06. Molecular genetics and metabolism reports, 27 p. 100746. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D434B028D266]
 
The first knock-in rat model for glutaric aciduria type I allows further insights into pathophysiology in brain and periphery.
Gonzalez Melo M., Remacle N., Cudré-Cung H.P., Roux C., Poms M., Cudalbu C., Barroso M., Gersting S.W., Feichtinger R.G., Mayr J.A. et al., 2021/06. Molecular genetics and metabolism, 133 (2) pp. 157-181. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_775A4B0E2E2A]
 
Magnetic resonance spectroscopy in the rodent brain: Experts' consensus recommendations.
Lanz B., Abaei A., Braissant O., Choi I.Y., Cudalbu C., Henry P.G., Gruetter R., Kara F., Kantarci K., Lee P. et al., 2021/05/31. NMR in biomedicine, 34 (5) pp. e4325. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_966E09A9670E]
 
Late post-natal neurometabolic development in healthy male rats using <sup>1</sup> H and <sup>31</sup> P magnetic resonance spectroscopy.
Račkayová V., Simicic D., Donati G., Braissant O., Gruetter R., McLin V.A., Cudalbu C., 2021/05. Journal of neurochemistry, 157 (3) pp. 508-519. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_520432C5B4EC]
Oral Ursodeoxycholic Acid Crosses the Blood Retinal Barrier in Patients with Retinal Detachment and Protects Against Retinal Degeneration in an Ex Vivo Model.
Daruich A., Jaworski T., Henry H., Zola M., Youale J., Parenti L., Naud M.C., Delaunay K., Bertrand M., Berdugo M. et al., 2021/04. Neurotherapeutics, 18 (2) pp. 1325-1338. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5C087AEA6F19]
Noninvasive imaging and quantification of bile salt hydrolase activity: From bacteria to humans.
Khodakivskyi P.V., Lauber C.L., Yevtodiyenko A., Bazhin A.A., Bruce S., Ringel-Kulka T., Ringel Y., Bétrisey B., Torres J., Hu J. et al., 2021/02. Science advances, 7 (6) pp. eaaz9857. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2305B6E1FAE5]
Probiotics improve the neurometabolic profile of rats with chronic cholestatic liver disease.
Rackayová V., Flatt E., Braissant O., Grosse J., Capobianco D., Mastromarino P., McMillin M., DeMorrow S., McLin V.A., Cudalbu C., 2021/01/26. Scientific reports, 11 (1) p. 2269. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9A9CF9B0223E]
A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism.
Duran-Trio L., Fernandes-Pires G., Simicic D., Grosse J., Roux-Petronelli C., Bruce S.J., Binz P.A., Sandi C., Cudalbu C., Braissant O., 2021/01/15. Scientific reports, 11 (1) p. 1636. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8DAB6587D7CA]
Genome-wide association study identifies 48 common genetic variants associated with handedness.
Cuellar-Partida G., Tung J.Y., Eriksson N., Albrecht E., Aliev F., Andreassen O.A., Barroso I., Beckmann J.S., Boks M.P., Boomsma D.I. et al., 2021/01. Nature human behaviour, 5 (1) pp. 59-70. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E7424914D13E]
Relapse of Human Chorionic Gonadotropin-Induced Hyperthyroidism and Severe Hyperemesis Gravidarum Secondary to Twin-Twin Transfusion Syndrome, With Rapid Recovery Following Fetoscopic Laser Coagulation: Case Report.
Lamine F., Camponovo C., Baud D., Werner D., Marino L., Sykiotis G.P., 2021. Frontiers in endocrinology, 12 p. 705567. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AC37777241A4]
 
The use of 68Ga-EDTA PET allows detecting progressive decline of renal function in rats.
Fontana A.O., Gonzalez Melo M., Allenbach G., Georgantas C., Wang R., Braissant O., Barbey F., Prior J.O., Ballhausen D., Viertl D., 2021. American journal of nuclear medicine and molecular imaging, 11 (6) pp. 519-528. Peer-reviewed.
[WoS][Pmid][serval:BIB_A42CB7293042]
2020
Longitudinal osmotic and neurometabolic changes in young rats with chronic cholestatic liver disease.
Rackayova V., Braissant O., Rougemont A.L., Cudalbu C., McLin V.A., 2020/05/05. Scientific reports, 10 (1) p. 7536. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_32D611E7D4E2]
Study design of Dal-GenE, a pharmacogenetic trial targeting reduction of cardiovascular events with dalcetrapib.
Tardif J.C., Dubé M.P., Pfeffer M.A., Waters D.D., Koenig W., Maggioni A.P., McMurray JJV, Mooser V., White H.D., Heinonen T. et al., 2020/04. American heart journal, 222 pp. 157-165. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_65A71638C56E]
2019
 
A biosensor for measuring NAD+ levels at the point of care
Yu Q., Pourmandi N., Xue L., Gondrand C., Fabritz S., Bardy D., Patiny L., Katsyuba E., Auwerx J., Johnsson K., 2019/12. Nature metabolism, 1 (12) pp. 1219-1225. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F96DE6C05AB9]
 
Argininosuccinate neurotoxicity and prevention by creatine in argininosuccinate lyase deficiency: An in vitro study in rat three-dimensional organotypic brain cell cultures.
Diez-Fernandez C., Hertig D., Loup M., Diserens G., Henry H., Vermathen P., Nuoffer J.M., Häberle J., Braissant O., 2019/11. Journal of inherited metabolic disease, 42 (6) pp. 1077-1087. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_363E5A2319D7]
 
Reply to: "Magnetic resonance spectroscopy: A surrogate marker of hepatic encephalopathy?"
McLin V.A., Braissant O., Cudalbu C., 2019/11. Journal of hepatology, 71 (5) p. 1057. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C1B539845E4C]
 
A high resolution LC-MS targeted method for the concomitant analysis of 11 contraceptive progestins and 4 steroids.
Laszlo C.F., Paz Montoya J., Shamseddin M., De Martino F., Beguin A., Nellen R., Bruce S.J., Moniatte M., Henry H., Brisken C., 2019/10/25. Journal of pharmaceutical and biomedical analysis, 175 p. 112756. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_74E38B4C9476]
 
Longitudinal neurometabolic changes in the hippocampus of a rat model of chronic hepatic encephalopathy.
Braissant O., Rackayová V., Pierzchala K., Grosse J., McLin V.A., Cudalbu C., 2019/09. Journal of hepatology, 71 (3) pp. 505-515. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9AD5E30DD64B]
 
Proteomics Standards Initiative Extended FASTA Format.
Binz P.A., Shofstahl J., Vizcaíno J.A., Barsnes H., Chalkley R.J., Menschaert G., Alpi E., Clauser K., Eng J.K., Lane L. et al., 2019/06/07. Journal of proteome research, 18 (6) pp. 2686-2692. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C8C33CCB2A98]
Dosage de la cystatine C dans l'évaluation de la fonction rénale
Bornet Marc-Antoine, Beaud Floriane, Bardy Daniel, Boulat Olivier, Kissling Sébastien, 2019/06/05. Forum Médical Suisse ‒ Swiss Medical Forum. Peer-reviewed.
[URN][DOI][serval:BIB_777254006D57]
 
Ammonium accumulation and chemokine decrease in culture media of Gcdh<sup>-/-</sup> 3D reaggregated brain cell cultures.
Cudré-Cung H.P., Remacle N., do Vale-Pereira S., Gonzalez M., Henry H., Ivanisevic J., Schmiesing J., Mühlhausen C., Braissant O., Ballhausen D., 2019/04. Molecular genetics and metabolism, 126 (4) pp. 416-428. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_27B1944B46C3]
2018
 
Semisynthetic sensor proteins enable metabolic assays at the point of care.
Yu Q., Xue L., Hiblot J., Griss R., Fabritz S., Roux C., Binz P.A., Haas D., Okun J.G., Johnsson K., 2018/09/14. Science, 361 (6407) pp. 1122-1126. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_399ED9288473]
 
Expanding the use of spectral libraries in proteomics.
Deutsch E.W., Perez-Riverol Y., Chalkley R.J., Wilhelm M., Tate S., Sachsenberg T., Walzer M., Käll L., Delanghe B., Böcker S. et al., 2018. Journal of Proteome ^Research, 17 (12) pp. 4051-4060. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_959C31F1CA86]
2009
 
Attestation de formation complémentaire du laboratoire du praticien (AFCLP).
Boulat O., 2009. Pipette, 5 pp. 20-21.
[serval:BIB_A49E336628D7]
2004
 
Creatine transporters: a reappraisal.
Speer O., Neukomm L.J., Murphy R.M., Zanolla E., Schlattner U., Henry H., Snow R.J., Wallimann T., 2004. Molecular and cellular biochemistry, 256-257 (1-2) pp. 407-424. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_22F8598A9161]
 
Predicting drug metabolism: Concepts and challenges
Testa B., Balmat A.-L., Long Anthony, 2004/01/01. Pure and Applied Chemistry, 76 (5) pp. 907-914.
[DOI][WoS][serval:BIB_8F3587125F9C]
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