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Publications | Phd and Masters theses

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21 publications

In press
 
Crosstalk of T cells within the ovarian cancer microenvironment.
Chap B.S., Rayroux N., Grimm A.J., Ghisoni E., Dangaj Laniti D. Trends in cancer. Peer-reviewed.
[DOI][Pmid][serval:BIB_40EBC2F4EC7B]
 
Convergent inducers and effectors of T cell paralysis in the tumour microenvironment.
Hanahan D., Michielin O., Pittet M.J. Nature reviews. Cancer. Peer-reviewed.
[DOI][Pmid][serval:BIB_9742FEA16017]
 
Genome-wide analysis of the biophysical properties of chromatin and nuclear proteins in living cells with Hi-D.
Valades-Cruz C.A., Barth R., Abdellah M., Shaban H.A. Nature protocols. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EC86BF4494A6]
2024
 
Immunotherapy for ovarian cancer: towards a tailored immunophenotype-based approach.
Ghisoni E., Morotti M., Sarivalasis A., Grimm A.J., Kandalaft L., Laniti D.D., Coukos G., 2024/11. Nature reviews. Clinical oncology, 21 (11) pp. 801-817. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A4CCCAE3C462]
Chromatin remodeling and spatial concerns in DNA double-strand break repair.
Downs J.A., Gasser S.M., 2024/10. Current opinion in cell biology, 90 p. 102405. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AE5F877C2F5]
 
The Impact of Neoadjuvant Chemotherapy on Ovarian Cancer Tumor Microenvironment: A Systematic Review of the Literature.
Spagnol G., Ghisoni E., Morotti M., De Tommasi O., Marchetti M., Bigardi S., Tuninetti V., Tasca G., Noventa M., Saccardi C. et al., 2024/06/27. International journal of molecular sciences, 25 (13). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6C1598EE7D8E]
PGE2 limits effector expansion of tumour-infiltrating stem-like CD8+ T cells.
Lacher S.B., Dörr J., de Almeida G.P., Hönninger J., Bayerl F., Hirschberger A., Pedde A.M., Meiser P., Ramsauer L., Rudolph T.J. et al., 2024/05. Nature, 629 (8011) pp. 417-425. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_32E213209E57]
 
GSDMD is associated with survival in human breast cancer but does not impact anti-tumor immunity in a mouse breast cancer model.
Boersma B., Puddinu V., Huard A., Fauteux-Daniel S., Wirapati P., Guedri S., Tille J.C., McKee T., Pittet M., Palmer G. et al., 2024. Frontiers in immunology, 15 p. 1396777. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FA09590DDCEE]
2023
 
From mucosal infection to successful cancer immunotherapy.
Goubet A.G., Rouanne M., Derosa L., Kroemer G., Zitvogel L., 2023/11. Nature reviews. Urology, 20 (11) pp. 682-700. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6E53B6DC92FB]
 
Structure and function of the nuclear envelope and nuclear pores.
Fahrenkrog B., Gasser S.M., 2023/11. FEBS letters, 597 (22) pp. 2703-2704. Peer-reviewed.
[DOI][Pmid][serval:BIB_3E346128BE4D]
 
Heterochromatin definition and function.
Bell O., Burton A., Dean C., Gasser S.M., Torres-Padilla M.E., 2023/10. Nature reviews. Molecular cell biology, 24 (10) pp. 691-694. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2569DB5A1E54]
Influence of corticosteroid treatment on CXCR4 expression in DLBCL.
Martin S., Viertl D., Janz A., Habringer S., Keller U., Schottelius M., 2023/05/10. EJNMMI research, 13 (1) p. 40. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_18B6F1DF4772]
Defining and targeting tumor-associated macrophages in malignant mesothelioma.
Wu L., Kohno M., Murakami J., Zia A., Allen J., Yun H., Chan M., Baciu C., Liu M., Serre-Beinier V. et al., 2023/02/28. Proceedings of the National Academy of Sciences of the United States of America, 120 (9) pp. e2210836120. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_27A7AC91CB84]
Continuous population-level monitoring of SARS-CoV-2 seroprevalence in a large European metropolitan region.
Emmenegger M., De Cecco E., Lamparter D., Jacquat RPB, Riou J., Menges D., Ballouz T., Ebner D., Schneider M.M., Morales I.C. et al., 2023/02/17. iScience, 26 (2) p. 105928. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5989E895E6D7]
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency.
Forny P., Bonilla X., Lamparter D., Shao W., Plessl T., Frei C., Bingisser A., Goetze S., van Drogen A., Harshman K. et al., 2023/01. Nature metabolism, 5 (1) pp. 80-95. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C23536BDF305]
2022
Nucleus-wide analysis of coherent RNA pol II movement in the context of chromatin dynamics in living cancer cells.
Shaban H.A., 2022/12. Nucleus, 13 (1) pp. 313-318. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7C3A725DF54E]
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.
Varadi M., Nair S., Sillitoe I., Tauriello G., Anyango S., Bienert S., Borges C., Deshpande M., Green T., Hassabis D. et al., 2022/11/30. GigaScience, 11 pp. giac118. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8AF1FE2C8116]
PD-1-cis IL-2R agonism yields better effectors from stem-like CD8<sup>+</sup> T cells.
Codarri Deak L., Nicolini V., Hashimoto M., Karagianni M., Schwalie P.C., Lauener L., Varypataki E.M., Richard M., Bommer E., Sam J. et al., 2022/10. Nature, 610 (7930) pp. 161-172. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D3A4E38D932D]
A CD4+ T cell reference map delineates subtype-specific adaptation during acute and chronic viral infections.
Andreatta M., Tjitropranoto A., Sherman Z., Kelly M.C., Ciucci T., Carmona S.J., 2022/07/13. eLife, 11 pp. e76339. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B25A9B1D7B9]
Dissection of the macrophage response towards infection by the Leishmania-viral endosymbiont duo and dynamics of the type I interferon response.
Bekkar A., Isorce N., Snäkä T., Claudinot S., Desponds C., Kopelyanskiy D., Prével F., Reverte M., Xenarios I., Fasel N. et al., 2022. Frontiers in cellular and infection microbiology, 12 p. 941888. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8E5B725F389C]
2020
 
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes.
Bolleman J., de Castro E., Baratin D., Gehant S., Cuche B.A., Auchincloss A.H., Coudert E., Hulo C., Masson P., Pedruzzi I. et al., 2020/02/01. GigaScience, 9 (2) pp. giaa003. Peer-reviewed.
[DOI][Pmid][serval:BIB_54723D6F9FEE]
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