Directorate for Innovation and Clinical Research

Publications | Phd and Masters theses

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88 publications

2024 | 2023 | 2022 | 2021 | 2020 |
2024
Early processed electroencephalography for the monitoring of deeply sedated mechanically ventilated critically ill patients.
Favre E., Bernini A., Miroz J.P., Abed-Maillard S., Ramelet A.S., Oddo M., 2024/11. Nursing in critical care, 29 (6) pp. 1781-1787. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B14DBF1A5133]
 
Vitamin and mineral supplements: Are they associated with fatigue?
Sisi Xie, Pedro Marques-Vidal, Vanessa Kraege, 2024/11. Clinical Nutrition ESPEN. Peer-reviewed.
[DOI][serval:BIB_F6F2D92EB0CE]
 
Weight, Anthropometric and Metabolic Changes After Discontinuing Antiretroviral Therapy Containing Tenofovir Alafenamide in People With HIV.
Damas J., Munting A., Fellay J., Haerry D., Marzolini C., Tarr P.E., Steffen A., Braun D.L., Stoeckle M., Bernasconi E. et al., 2024/10/15. Clinical infectious diseases, 79 (4) pp. 990-998. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A22E1C92231B]
 
Early detection of neonatal sepsis and reduction of overall antibiotic exposure: Towards precision medicine
Martin Stocker, Laura Fillistorf, Giorgia Carra, Eric Giannoni, 2024/10. Archives de Pédiatrie.
[DOI][serval:BIB_918149A94AC7]
 
Efficiency of a Neurosurgical Operating Room According to Nursing Characteristics in a University Hospital: From Operating Times to a Cost-Benefit Analysis.
Bartoli A., Pinget C., 2024/10/01. Operative neurosurgery, 27 (4) pp. 407-414. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C4630C59BD07]
 
Laboratory Animals presents Special Issue Biostatistics Notes.
Gosselin R.D., Reynolds P.S., 2024/10. Laboratory animals, 58 (5) p. 403. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2E36FD5A252E]
 
Testing for normality: a user's (cautionary) guide.
Gosselin R.D., 2024/10. Laboratory animals, 58 (5) pp. 433-437. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2672B6DE99FD]
 
Loss of tolerance precedes triggering and lifelong persistence of pathogenic type I interferon autoantibodies.
Fernbach S., Mair N.K., Abela I.A., Groen K., Kuratli R., Lork M., Thorball C.W., Bernasconi E., Filippidis P., Leuzinger K. et al., 2024/09/02. The Journal of experimental medicine, 221 (9). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_091D90E14C02]
Prevalence of actionable pharmacogenetic variants and high-risk drug prescriptions: A Swiss hospital-based cohort study.
Hodel F., De Min M.B., Thorball C.W., Redin C., Vollenweider P., Girardin F., Fellay J., 2024/09. Clinical and translational science, 17 (9) pp. e70009. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1F053E42785D]
Accelerating Clinical Text Annotation in Underrepresented Languages: A Case Study on Text De-Identification
Xu He A., Loftsson Valentin, Kulynych Bogdan, Kaabachi Bayrem, Raisaro Jean Louis, 2024/08/22. pp. 853-857 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_9D47A8BCBA47]
Evaluating Synthetic Data Augmentation to Correct for Data Imbalance in Realistic Clinical Prediction Settings
Wahler Nina, Kaabachi Bayrem, Kulynych Bogdan, Despraz Jérémie, Simon Christian, Raisaro Jean Louis, 2024/08/22. pp. 929-933 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_F4F5679ACFD4]
Tunable Privacy Risk Evaluation of Generative Adversarial Networks
Kaabachi Bayrem, Briki Farah, Kulynych Bogdan, Despraz Jérémie, Raisaro Jean Louis, 2024/08/22. pp. 1233-1237 dans Digital Health and Informatics Innovations for Sustainable Health Care Systems, IOS Press.
[URN][DOI][Pmid][serval:BIB_1E8620478EEF]
 
Humanisme, intelligence et identité : Hippocrate au 21e siècle.
Kraege V., 2024/08/21. Revue medicale suisse, 20 (883) p. 1436. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_4506D77DD018]
 
Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen.
Neuner-Jehle N., Zeeb M., Thorball C.W., Fellay J., Metzner K.J., Frischknecht P., Neumann K., Leeman C., Rauch A., Stöckle M. et al., 2024/08. PLoS pathogens, 20 (8) pp. e1012385. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A3A54E74EB11]
Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection.
Marchal A., Cirulli E.T., Neveux I., Bellos E., Thwaites R.S., Schiabor Barrett K.M., Zhang Y., Nemes-Bokun I., Kalinova M., Catchpole A. et al., 2024/07/25. HGG advances, 5 (3) p. 100300. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_45B960D632E8]
 
Paediatric Personalized Research Network Switzerland (SwissPedHealth): A Joint Paediatric National Data Stream
Mozun R, Belle F, Agostini A, Baumgartner M, Fellay J, Forrest C, Froese S, Giannoni E, Goetze S, Hofmann K et al., 2024/07/24..
[DOI][serval:BIB_65BC2307FBC9]
Joint host-pathogen genomic analysis identifies hepatitis B virus mutations associated with human NTCP and HLA class I variation.
Xu Z.M., Gnouamozi G.E., Rüeger S., Shea P.R., Buti M., Chan H.L., Marcellin P., Lawless D., Naret O., Zeller M. et al., 2024/06/06. American journal of human genetics, 111 (6) pp. 1018-1034. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9CF13B4886CA]
A Machine Learning Application to Classify Patients at Differing Levels of Risk of Opioid Use Disorder: Clinician-Based Validation Study.
Eguale T., Bastardot F., Song W., Motta-Calderon D., Elsobky Y., Rui A., Marceau M., Davis C., Ganesan S., Alsubai A. et al., 2024/06/04. JMIR medical informatics, 12 pp. e53625. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F79BB362F963]
Diagnostic accuracy of a sequence-specific Mtb-DNA hybridization assay in urine: a case-control study including subclinical TB cases.
Tschan Y., Sasamalo M., Hiza H., Fellay J., Gagneux S., Reither K., Hella J., Portevin D., 2024/06/04. Microbiology spectrum, 12 (6) pp. e0042624. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4CA88B9A5608]
Inborn errors of type I interferon immunity in patients with symptomatic acute hepatitis E.
Saadat A., Gouttenoire J., Ripellino P., Semela D., Amar S., Frey B.M., Fontana S., Mdawar-Bailly E., Moradpour D., Fellay J. et al., 2024/06/01. Hepatology, 79 (6) pp. 1421-1431. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_212560170173]
Reply to Palumbo et al. Comment on "Flatscher et al. Impact of Mediterranean Diet on Lipid Composition in the Colaus-PsyColaus Study. Nutrients 2023, 15, 4659".
Flatscher M., Garnier A., Marques-Vidal P., Kraege V., 2024/05/09. Nutrients, 16 (10). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_013B81FB5CDD]
Ketone Bodies after Cardiac Arrest: A Narrative Review and the Rationale for Use.
Annoni F., Gouvea Bogossian E., Peluso L., Su F., Moreau A., Nobile L., Casu S.G., Sterchele E.D., Calabro L., Salvagno M. et al., 2024/05/04. Cells, 13 (9). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7F3B02D46B1]
Author Correction: Neoadjuvant atezolizumab plus chemotherapy in gastric and gastroesophageal junction adenocarcinoma: the phase 2 PANDA trial.
Verschoor Y.L., van de Haar J., van den Berg J.G., van Sandick J.W., Kodach L.L., van Dieren J.M., Balduzzi S., Grootscholten C., IJsselsteijn M.E., Veenhof AAFA et al., 2024/05. Nature medicine, 30 (5) p. 1499. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8A325C52A9E1]
Dire non à autrui, c’est dire oui à soi-même
Vanessa Kraege, Vanessa Kraege, 2024/04/24. Bulletin des Médecins Suisses.
[URN][DOI][serval:BIB_D570A792DE64]
Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania.
Hiza H., Zwyer M., Hella J., Arbués A., Sasamalo M., Borrell S., Xu Z.M., Ross A., Brites D., Fellay J. et al., 2024/04/23. Scientific reports, 14 (1) p. 9287. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_288A15B47D51]
Vitamin supplements: Are they associated with immune status?
Grivat B., Marques-Vidal P., Kraege V., 2024/04. Clinical nutrition ESPEN, 60 pp. 102-108. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_07D3E26124BE]
Alzheimer's disease marker phospho-tau181 is not elevated in the first year after moderate-to-severe TBI.
Graham N., Zimmerman K., Heslegrave A.J., Keshavan A., Moro F., Abed-Maillard S., Bernini A., Dunet V., Garbero E., Nattino G. et al., 2024/03/13. Journal of neurology, neurosurgery, and psychiatry, 95 (4) pp. 356-359. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_296EBD031A7A]
 
The predictive value and clinical use of the neurological pupillary index - Authors' reply.
Galimberti S., Petrosino M., Rebora P., Oddo M., Taccone F.S., Citerio G., 2024/03. The Lancet. Neurology, 23 (3) pp. 229-230. Peer-reviewed.
[DOI][Pmid][serval:BIB_4C5254830791]
 
ChatGPT en pratique clinique : perspectives et limites [ChatGPT in clinical practice: prospects and challenges]
Roustan D., Galland-Decker C., Marinoni C., Bastardot F., 2024/02/14. Revue medicale suisse, 20 (861) pp. 363-366. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_589577A12550]
A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy.
Chong A.Y., Brenner N., Jimenez-Kaufmann A., Cortes A., Hill M., Littlejohns T.J., Gilchrist J.J., Fairfax B.P., Knight J.C., Hodel F. et al., 2024/02/01. American journal of human genetics, 111 (2) pp. 295-308. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_17B73429046E]
Critical Care Management of Patients After Cardiac Arrest: A Scientific Statement from the American Heart Association and Neurocritical Care Society.
Hirsch K.G., Abella B.S., Amorim E., Bader M.K., Barletta J.F., Berg K., Callaway C.W., Friberg H., Gilmore E.J., Greer D.M. et al., 2024/02. Neurocritical care, 40 (1) pp. 1-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71B25D5369B3]
Le médecin, quel pantin!
Vanessa Kraege, 2024/01/24. Bulletin des Médecins Suisses.
[URN][DOI][serval:BIB_4021397D17D0]
Correction: Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19.
Matuozzo D., Talouarn E., Marchal A., Zhang P., Manry J., Seeleuthner Y., Zhang Y., Bolze A., Chaldebas M., Milisavljevic B. et al., 2024/01/06. Genome medicine, 16 (1) p. 6. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CA23CC25F766]
 
Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling.
Pati P., Karkampouna S., Bonollo F., Compérat E., Radić M., Spahn M., Martinelli A., Wartenberg M., Kruithof-de Julio M., Rapsomaniki M., 2024. Nature machine intelligence, 6 (9) pp. 1077-1093. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7E52FA6DFCFD]
 
Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study.
Zeeb M., Pasin C., Cavassini M., Bieler-Aeschlimann M., Frischknecht P., Kusejko K., Fellay J., Blanquart F., Metzner K.J., Neumann K. et al., 2024. Brain communications, 6 (4) pp. fcae188. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F4D8C677D8C6]
The predictive value of highly malignant EEG patterns after cardiac arrest: evaluation of the ERC-ESICM recommendations.
Turella S., Dankiewicz J., Friberg H., Jakobsen J.C., Leithner C., Levin H., Lilja G., Moseby-Knappe M., Nielsen N., Rossetti A.O. et al., 2024/01. Intensive care medicine, 50 (1) pp. 90-102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B43D2E92358C]
2023
Le courage du franc-parler
Kraege Vanessa, 2023/12/20. Bulletin des Médecins Suisses.
[URN][DOI][serval:BIB_4A4AA531C543]
Cannabis use and atherosclerotic cardiovascular disease: a Mendelian randomization study.
de La Harpe R., Schoeler T., Thorball C.W., Thomas A., Kutalik Z., Vaucher J., 2023/12/13. BMC cardiovascular disorders, 23 (1) p. 611. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2C9E1FFFC502]
Correction: The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Nakas C.T., Raisaro J.L., Leichtle A.B., 2023/12/07. Journal of medical Internet research, 25 pp. e54809. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D10A3F7A7AC7]
 
Souffrons-nous toutes et tous d’un syndrome d’imposture? [Do we all suffer from imposter syndrome?]
Augros F., Kraege V., Méan M., Waeber G., Castioni J., 2023/11/22. Revue medicale suisse, 19 (851) pp. 2208-2211. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F9C134EC45FA]
 
Transcriptomics and chromatin accessibility in multiple African population samples.
DeGorter M.K., Goddard P.C., Karakoc E., Kundu S., Yan S.M., Nachun D., Abell N., Aguirre M., Carstensen T., Chen Z. et al., 2023/11/06..
[DOI][Pmid][serval:BIB_77F4C9A66043]
 
Development of a Predictive Model for Hospital-Acquired Pressure Injuries.
Pouzols S., Despraz J., Mabire C., Raisaro J.L., 2023/11/01. Computers, informatics, nursing, 41 (11) pp. 884-891. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9BAB8C75537C]
The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Theodoros Naka C., Raisaro J.L., Leichtle A.B., 2023/10/18. Journal of medical Internet research, 25 pp. e47254. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2525DF90BB64]
 
Call for submissions: Special issue on short introductory notes on biostatistics
Gosselin Romain-Daniel, Reynolds Penelope S, 2023/10. Laboratory Animals, 57 (5) pp. 478-478. Peer-reviewed.
[DOI][WoS][serval:BIB_918C7742FDD7]
G2GSnake: a Snakemake workflow for host-pathogen genomic association studies.
Xu Z.M., Naret O., Oumelloul M.A., Fellay J., 2023/10. Bioinformatics advances, 3 (1) pp. vbad142. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_5457A30782C8]
Association of a Polygenic Risk Score With Osteoporosis in People Living With HIV: The Swiss HIV Cohort Study.
Schwenke J.M., Thorball C.W., Schoepf I.C., Ryom L., Hasse B., Lamy O., Calmy A., Wandeler G., Marzolini C., Kahlert C.R. et al., 2023/09/15. The Journal of infectious diseases, 228 (6) pp. 742-750. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_44F15B89FB36]
Autoantibodies neutralizing type I IFNs underlie West Nile virus encephalitis in ∼40% of patients.
Gervais A., Rovida F., Avanzini M.A., Croce S., Marchal A., Lin S.C., Ferrari A., Thorball C.W., Constant O., Le Voyer T. et al., 2023/09/04. The Journal of experimental medicine, 220 (9) pp. e20230661. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_36E7457158FD]
 
Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load.
McLaren P.J., Porreca I., Iaconis G., Mok H.P., Mukhopadhyay S., Karakoc E., Cristinelli S., Pomilla C., Bartha I., Thorball C.W. et al., 2023/09. Nature, 621 (7979) pp. E42. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5534E0BE7C51]
Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.
Cobat A., Zhang Q., COVID Human Genetic Effort, Abel L., Casanova J.L., Fellay J., 2023/08/10. Annual review of biomedical data science, 6 pp. 465-486. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FAD92BD97EE4]
 
Africa-specific human genetic variation near CHD1L associates with HIV-1 load.
McLaren P.J., Porreca I., Iaconis G., Mok H.P., Mukhopadhyay S., Karakoc E., Cristinelli S., Pomilla C., Bartha I., Thorball C.W. et al., 2023/08. Nature, 620 (7976) pp. 1025-1030. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B1BEC83916D3]
Genetic features and genomic targets of human KRAB-zinc finger proteins.
de Tribolet-Hardy J., Thorball C.W., Forey R., Planet E., Duc J., Coudray A., Khubieh B., Offner S., Pulver C., Fellay J. et al., 2023/08. Genome research, 33 (8) pp. 1409-1423. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_41F4935182BD]
 
Prognostication and Goals of Care Decisions in Severe Traumatic Brain Injury: A Survey of The Seattle International Severe Traumatic Brain Injury Consensus Conference Working Group.
Sarigul B., Bell R.S., Chesnut R., Aguilera S., Buki A., Citerio G., Cooper D.J., Diaz-Arrastia R., Diringer M., Figaji A. et al., 2023/08. Journal of neurotrauma, 40 (15-16) pp. 1707-1717. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3B700CF34E6E]
A metagenome-wide association study of HIV disease progression in HIV controllers.
Real L.M., Sáez M.E., Corma-Gómez A., Gonzalez-Pérez A., Thorball C., Ruiz R., Jimenez-Leon M.R., Gonzalez-Serna A., Gasca-Capote C., Bravo M.J. et al., 2023/07/21. iScience, 26 (7) p. 107214. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6F6159861097]
The Statistical Analysis of the Varying Brain.
Chén Oliver Y., Thanh Vũ Duy, Greub Gilbert, Cao Hengyi, He Xingru, Muller Yannick, Petrovas Constantinos, Shou Haochang, Nguyen Viet-Dung, Zhi Bangdong et al., 2023/07/02. IEEE Statistical Signal Processing (SSP). Peer-reviewed.
[URN][DOI][WoS][serval:BIB_C6B3B6AA1F8B]
Leukocyte Count and Coronary Artery Disease Events in People With Human Immunodeficiency Virus: A Longitudinal Study.
Avery E.F., Kleynhans J.N., Ledergerber B., Schoepf I.C., Thorball C.W., Kootstra N.A., Reiss P., Ryom L., Braun D.L., Thurnheer M.C. et al., 2023/06/08. Clinical infectious diseases, 76 (11) pp. 1969-1979. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E1546C7A7084]
Multiancestry sex-stratified genomic associations with HIV viral load and controller status from the ICGH.
Vergara C., Tuff J.F., International Collaboration for the Genomics of HIV (ICGH), Fellay J., Duggal P., Scully E.P., McLaren P.J., 2023/06/08. JCI insight, 8 (11). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_18D55776D514]
Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort.
Lawless D., McKennan C.G., Das S.R., Junier T., Xu Z.M., Anderson L.J., Gebretsadik T., Shilts M.H., Larkin E., Rosas-Salazar C. et al., 2023/05/12. The Journal of infectious diseases, 227 (10) pp. 1194-1202. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0C12920D2B3E]
Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years.
Schoepf I.C., Esteban-Cantos A., Thorball C.W., Rodés B., Reiss P., Rodríguez-Centeno J., Riebensahm C., Braun D.L., Marzolini C., Seneghini M. et al., 2023/05. The lancet. Healthy longevity, 4 (5) pp. e211-e218. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_689682CD15B9]
Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19.
Matuozzo D., Talouarn E., Marchal A., Zhang P., Manry J., Seeleuthner Y., Zhang Y., Bolze A., Chaldebas M., Milisavljevic B. et al., 2023/04/05. Genome medicine, 15 (1) p. 22. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_31798B2B6490]
Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania.
Zwyer M., Rutaihwa L.K., Windels E., Hella J., Menardo F., Sasamalo M., Sommer G., Schmülling L., Borrell S., Reinhard M. et al., 2023/04. PLoS pathogens, 19 (4) pp. e1010893. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6BF85513B900]
FAIRification of health-related data using semantic web technologies in the Swiss Personalized Health Network.
Touré V., Krauss P., Gnodtke K., Buchhorn J., Unni D., Horki P., Raisaro J.L., Kalt K., Teixeira D., Crameri K. et al., 2023/03/10. Scientific data, 10 (1) p. 127. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FDF148812F2]
 
Cerebral Metabolic Dysfunction at the Acute Phase of Traumatic Brain Injury Correlates with Long-Term Tissue Loss.
Bernini A., Magnoni S., Miroz J.P., Corredor-Jerez R., Bertolini G., Zetterberg H., Graham N., Sharp D., Oddo M., Dunet V., 2023/03. Journal of neurotrauma, 40 (5-6) pp. 472-481. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_708BFD3A38AA]
An End-to-End Natural Language Processing Application for Prediction of Medical Case Coding Complexity: Algorithm Development and Validation.
Xu H.A., Maccari B., Guillain H., Herzen J., Agri F., Raisaro J.L., 2023/01/19. JMIR medical informatics, 11 pp. e38150. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7EA8C0FFC35]
 
Polygenic Risk Scores for Prediction of Subclinical Coronary Artery Disease in Persons With Human Immunodeficiency Virus (HIV): The Swiss HIV Cohort Study.
Schoepf I.C., Thorball C.W., Kovari H., Ledergerber B., Buechel R.R., Calmy A., Weber R., Kaufmann P.A., Nkoulou R., Schwenke J.M. et al., 2023/01/06. Clinical infectious diseases, 76 (1) pp. 48-56. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F8C439A0D50D]
Predicting type 2 diabetes risk before and after solid organ transplantation using polygenic scores in a Danish cohort.
Dos Santos Q., Leung P., Thorball C.W., Ledergerber B., Fellay J., MacPherson C.R., Hornum M., Terrones-Campos C., Rasmussen A., Gustafsson F. et al., 2023. Frontiers in molecular biosciences, 10 p. 1282412. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_19C243A8DA7F]
2022
 
Hypothermic versus Normothermic Temperature Control after Cardiac Arrest.
Holgersson J., Meyer MAS, Dankiewicz J., Lilja G., Ullén S., Hassager C., Cronberg T., Wise M.P., Bělohlávek J., Hovdenes J. et al., 2022/11. NEJM evidence, 1 (11) pp. EVIDoa2200137. Peer-reviewed.
[DOI][Pmid][serval:BIB_E27E0B56D5D9]
Treatment reality of patients with BRAF-mutant advanced/metastatic melanoma in Switzerland in the era of choice.
Mangana J., Zihler D., Bossart S., Brönnimann D., Zachariah R., Gérard C.L., 2022/10/01. Melanoma research, 32 (5) pp. 366-372. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A4E833D2057F]
Transcriptional and functional analyses of neoantigen-specific CD4 T cells during a profound response to anti-PD-L1 in metastatic Merkel cell carcinoma.
Church C., Pulliam T., Longino N., Park S.Y., Smythe K.S., Makarov V., Riaz N., Jing L., Amezquita R., Campbell J.S. et al., 2022/09. Journal for immunotherapy of cancer, 10 (9) pp. e005328. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_750977A30F9F]
A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits.
Nadeau S., Thorball C.W., Kouyos R., Günthard H.F., Böni J., Yerly S., Perreau M., Klimkait T., Rauch A., Hirsch H.H. et al., 2022/08/03. Molecular biology and evolution, 39 (8) pp. msac163. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0A2EB45D9AE]
 
A Baseline Cellular Antiviral State Is Maintained by cGAS and Its Most Frequent Naturally Occurring Variant rs610913.
Kazmierski J., Elsner C., Döhner K., Xu S., Ducroux A., Pott F., Jansen J., Thorball C.W., Zeymer O., Zhou X. et al., 2022/08/01. Journal of immunology, 209 (3) pp. 535-547. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_99B41F98BEAA]
Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV.
Bick A.G., Popadin K., Thorball C.W., Uddin M.M., Zanni M.V., Yu B., Cavassini M., Rauch A., Tarr P., Schmid P. et al., 2022/07/08. Scientific reports, 12 (1) p. 11638. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3C87FA69CB82]
Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.
Joanito I., Wirapati P., Zhao N., Nawaz Z., Yeo G., Lee F., Eng CLP, Macalinao D.C., Kahraman M., Srinivasan H. et al., 2022/07. Nature genetics, 54 (7) pp. 963-975. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_27A9BBA898C9]
Monocyte Transcriptional Responses to Mycobacterium tuberculosis Associate with Resistance to Tuberculin Skin Test and Interferon Gamma Release Assay Conversion.
Simmons J.D., Dill-McFarland K.A., Stein C.M., Van P.T., Chihota V., Ntshiqa T., Maenetje P., Peterson G.J., Benchek P., Nsereko M. et al., 2022/06/29. mSphere, 7 (3) pp. e0015922. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2FD7AA544175]
Neurological Pupil Index for the Early Prediction of Outcome in Severe Acute Brain Injury Patients.
Romagnosi F., Bernini A., Bongiovanni F., Iaquaniello C., Miroz J.P., Citerio G., Taccone F.S., Oddo M., 2022/05/06. Brain sciences, 12 (5) p. 609. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4475DD601004]
 
Early neurological pupil index to predict outcome after cardiac arrest.
Peluso L., Oddo M., Sandroni C., Citerio G., Taccone F.S., 2022/04. Intensive care medicine, 48 (4) pp. 496-497. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_44934E64CC7D]
 
Cohort Profile Update: The Swiss HIV Cohort Study (SHCS).
Scherrer A.U., Traytel A., Braun D.L., Calmy A., Battegay M., Cavassini M., Furrer H., Schmid P., Bernasconi E., Stoeckle M. et al., 2022/02/18. International journal of epidemiology, 51 (1) pp. 33-34j. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CAE07421BB63]
ACKR3 promotes CXCL12/CXCR4-mediated cell-to-cell-induced lymphoma migration through LTB4 production.
Antonello P., Pizzagalli D.U., Foglierini M., Melgrati S., Radice E., Thelen S., Thelen M., 2022. Frontiers in immunology, 13 p. 1067885. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3D390AEFD3E0]
CD38 Expression by Antigen-Specific CD4 T Cells Is Significantly Restored 5 Months After Treatment Initiation Independently of Sputum Bacterial Load at the Time of Tuberculosis Diagnosis.
Hiza H., Hella J., Arbués A., Sasamalo M., Misana V., Fellay J., Gagneux S., Reither K., Portevin D., 2022. Frontiers in medicine, 9 p. 821776. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BDB41F7DEE7D]
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.
Zhao L., Wymant C., Blanquart F., Golubchik T., Gall A., Bakker M., Bezemer D., Hall M., Ong S.H., Albert J. et al., 2022. Virus evolution, 8 (1) pp. veac022. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DED149CC980B]
2021
 
Author Correction: A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response.
Luo Y., Kanai M., Choi W., Li X., Sakaue S., Yamamoto K., Ogawa K., Gutierrez-Arcelus M., Gregersen P.K., Stuart P.E. et al., 2021/12. Nature genetics, 53 (12) p. 1722. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_49102EA5EBAA]
 
Coronary Artery Disease-Associated and Longevity-Associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living With Human Immunodeficiency Virus: The Swiss HIV Cohort Study.
Schoepf I.C., Thorball C.W., Ledergerber B., Engel T., Raffenberg M., Kootstra N.A., Reiss P., Hasse B., Marzolini C., Thurnheer C. et al., 2021/11/02. Clinical infectious diseases, 73 (9) pp. 1597-1604. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_782F7251FD8F]
 
Axonal marker neurofilament light predicts long-term outcomes and progressive neurodegeneration after traumatic brain injury.
Graham NSN, Zimmerman K.A., Moro F., Heslegrave A., Maillard S.A., Bernini A., Miroz J.P., Donat C.K., Lopez M.Y., Bourke N. et al., 2021/09/29. Science translational medicine, 13 (613) pp. eabg9922. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_53A91CFFBB61]
 
FV 1. Can EEG predict present cortical somato-sensory evoked potentials after cardiac arrest?
Beuchat I., Novy J., Barbella G., Oddo M., Rossetti A., 2021/08. Clinical Neurophysiology, 132 (8) pp. e29.
[DOI][serval:BIB_390049A52E9B]
A National, Semantic-Driven, Three-Pillar Strategy to Enable Health Data Secondary Usage Interoperability for Research Within the Swiss Personalized Health Network: Methodological Study.
Gaudet-Blavignac C., Raisaro J.L., Touré V., Österle S., Crameri K., Lovis C., 2021/06/24. JMIR medical informatics, 9 (6) pp. e27591. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_85D2A336EDD4]
 
Citizen-centered, auditable and privacy-preserving population genomics.
Grishin D., Raisaro J.L., Troncoso-Pastoriza J.R., Obbad K., Quinn K., Misbach M., Gollhardt J., Sa J., Fellay J., Church G.M. et al., 2021/03. Nature computational science, 1 (3) pp. 192-198. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C0580E5093AA]
Revolutionizing Medical Data Sharing Using Advanced Privacy-Enhancing Technologies: Technical, Legal, and Ethical Synthesis.
Scheibner J., Raisaro J.L., Troncoso-Pastoriza J.R., Ienca M., Fellay J., Vayena E., Hubaux J.P., 2021/02/25. Journal of medical Internet research, 23 (2) pp. e25120. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E2683B6181C3]
Insufficient transparency of statistical reporting in preclinical research: a scoping review.
Gosselin R.D., 2021/02/08. Scientific reports, 11 (1) p. 3335. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3AC1F73824B4]
2020
 
Statistical Analysis Must Improve to Address the Reproducibility Crisis: The ACcess to Transparent Statistics (ACTS) Call to Action.
Gosselin R.D., 2020/01. BioEssays, 42 (1) pp. e1900189. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_570EB8E2C519]
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