Swiss Institute of Bioinformatics

Publications | Phd and Masters theses

Advanced search is available through Serval

Publications can be managed by accessing Serval via MyUnil


1639 publications

... | 2003 | 2002 | 2001 | 2000 |
2003
 
Using Genetic Algorithms for Pairwise and Multiple Sequence Alignments.
Notredame C, 2003. dans Fogel BG Corne D W (eds.) Evolutionary Computation in Bioinformatics, Morgan Kauffmann Publishers.
[serval:BIB_27603]
 
Using Multiple Alignment Methods to Assess the Quality of Genomic Data Analysis.
Notredame C, Abergel C, 2003. dans Andrade M (eds.) Bioinformatics and Genomes: Current Perspectives, Horizon Scientific Press.
[serval:BIB_27605]
2002
 
Antigenicity and immunogenicity of Melan-A/MART-1 derived peptides as targets for tumor reactive CTL in human melanoma.
Romero P., Valmori D., Pittet M.J., Zippelius A., Rimoldi D., Lévy F., Dutoit V., Ayyoub M., Rubio-Godoy V., Michielin O. et al., 2002. Immunological reviews, 188 pp. 81-96. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F417556ABB91]
 
Binding free energy differences in a TCR-peptide-MHC complex induced by a peptide mutation: a simulation analysis.
Michielin O., Karplus M., 2002. Journal of molecular biology, 324 (3) pp. 547-569. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ECD8D7AD7694]
 
High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.
Roulet E., Busso S., Camargo A.A., Simpson A.J., Mermod N., Bucher P., 2002. Nature Biotechnology, 20 (8) pp. 831-835.
[DOI][WoS][Pmid][serval:BIB_AD8B977B18DC]
 
Interpro: an integrated documentation resource for protein families, domains and functional site.
Mulder N, Apweiler R, Attwood T, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P et al., 2002. Brief Bioinform, 3 pp. 225-235.
[serval:BIB_24562]
 
Long-range heterogeneity at the 3' ends of human mRNAs.
Iseli C., Stevenson B.J., de Souza S.J., Samaia H.B., Camargo A.A., Buetow K.H., Strausberg R.L., Simpson A.J., Bucher P., Jongeneel C.V., 2002. Genome Research, 12 (7) pp. 1068-1074.
[DOI][WoS][Pmid][serval:BIB_489DD81FECC4]
 
Nineteen additional unpredicted transcripts from human chromosome 21.
Reymond A., Camargo A.A., Deutsch S., Stevenson B.J., Parmigiani R.B., Ucla C., Bettoni F., Rossier C., Lyle R., Guipponi M. et al., 2002. Genomics, 79 (6) pp. 824-832.
[DOI][WoS][Pmid][serval:BIB_2C6C4088B09D]
 
Numerous potentially functional but non-genic conserved sequences on human chromosome 21.
Dermitzakis E, Reymond A, Lyle R, Scamuffa N, Ucla C, Deutsch S, Stevenson B, Flegel V, Bucher P, Jongeneel CV et al., 2002. Nature, 420 pp. 578-582.
[serval:BIB_24555]
 
Numerous potentially functional but non-genic conserved sequences on human chromosome 21.
Dermitzakis E.T., Reymond A., Lyle R., Scamuffa N., Ucla C., Deutsch S., Stevenson B.J., Flegel V., Bucher P., Jongeneel C.V. et al., 2002. Nature, 420 (6915) pp. 578-582.
[DOI][WoS][Pmid][serval:BIB_D429FBC49AE8]
 
PROSITE: a documented database using patterns and profiles as motif descriptors.
Sigrist C, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P, 2002. Brief Bioinform, 3 pp. 265-274.
[serval:BIB_24570]
 
Recent progress in multiple sequence alignment: a survey.
Notredame C, 2002. Pharmacogenomics, 3 pp. 131-44.
[serval:BIB_24564]
 
Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.
Zoete V., Michielin O., Karplus M., 2002. Journal of molecular biology, 315 (1) pp. 21-52. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FDECFC9DD1E4]
 
The elusive roles of bacterial glutathione S-transferases: new lessons from genomes.
Vuilleumier S., Pagni M., 2002. Applied microbiology and biotechnology, 58 (2) pp. 138-146. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_24572]
 
The PROSITE database, its status in 2002.
Falquet L., Pagni M., Bucher P., Hulo N., Sigrist C.J., Hofmann K., Bairoch A., 2002. Nucleic Acids Research, 30 (1) pp. 235-238.
[DOI][WoS][Pmid][serval:BIB_24557]
2001
 
Making sense of score statistics for sequence alignments
Pagni M., Jongeneel C. V., 2001/03. Briefings in Bioinformatics, 2 (1) pp. 51-67.
[Pmid][serval:BIB_CD62AA985FEC]
 
A cSNP map and database for human chromosome 21.
Deutsch S., Iseli C., Bucher P., Antonarakis S.E., Scott H.S., 2001. Genome Research, 11 (2) pp. 300-307.
[WoS][Pmid][serval:BIB_18769]
 
DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites.
Ehret G.B., Reichenbach P., Schindler U., Horvath C.M., Fritz S., Nabholz M., Bucher P., 2001. The Journal of biological chemistry, 276 (9) pp. 6675-88.
[DOI][WoS][Pmid][serval:BIB_18768]
 
Individuality of Ag-selected and preimmune TCR repertoires.
Maryanski J.L., Attuil V., Hamrouni A., Mutin M., Rossi M., Aublin A., Bucher P., 2001. Immunologic Research, 23 (1) pp. 75-84.
[DOI][WoS][Pmid][serval:BIB_18771]
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Apweiler R., Attwood T.K., Bairoch A., Bateman A., Birney E., Biswas M., Bucher P., Cerutti L., Corpet F., Croning M.D. et al., 2001. Nucleic acids research, 29 (1) pp. 37-40.
[URN][DOI][WoS][Pmid][serval:BIB_18766]
 
trEST, trGEN and Hits: access to databases of predicted protein sequences.
Pagni M., Iseli C., Junier T., Falquet L., Jongeneel V., Bucher P., 2001. Nucleic acids research, 29 (1) pp. 148-51.
[DOI][WoS][Pmid][serval:BIB_18767]
2000
 
Searching the expressed sequence tag (EST) databases: panning for genes.
Jongeneel C.V., 2000/02. Briefings in Bioinformatics, 1 (1) pp. 76-92.
[Pmid][serval:BIB_E2133358ABF7]
 
Comparative T cell receptor repertoire selection by antigen after adoptive transfer: a glimpse at an antigen-specific preimmune repertoire.
Attuil V., Bucher P., Rossi M., Mutin M., Maryanski J.L., 2000. Proceedings of the National Academy of Sciences of the United States of America, 97 (15) pp. 8473-8478.
[DOI][WoS][Pmid][serval:BIB_16739]
 
Dotlet: diagonal plots in a web browser.
Junier T, Pagni M, 2000. Bioinformatics, 16 pp. 178-179.
[serval:BIB_16738]
 
Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites.
Roulet E., Bucher P., Schneider R., Wingender E., Dusserre Y., Werner T., Mermod N., 2000. Journal of Molecular Biology, 297 (4) pp. 833-848.
[DOI][WoS][Pmid][serval:BIB_C0A73F212EB6]
 
Myc induces the nucleolin and BN51 genes: possible implications in ribosome biogenesis.
Greasley P.J., Bonnard C., Amati B., 2000. Nucleic Acids Research, 28 (2) pp. 446-453.
[DOI][WoS][Pmid][serval:BIB_16736]
 
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.
Dias Neto E., Correa R.G., Verjovski-Almeida S., Briones M.R., Nagai M.A., da Silva W., Zago M.A., Bordin S., Costa F.F., Goldman G.H. et al., 2000. Proceedings of the National Academy of Sciences of the United States of America, 97 (7) pp. 3491-3496.
[Pmid][serval:BIB_16735]
 
The eukaryotic promoter database (EPD).
Périer R.C., Praz V., Junier T., Bonnard C., Bucher P., 2000. Nucleic acids research, 28 (1) pp. 302-3.
[DOI][WoS][Pmid][serval:BIB_16734]
 
The need for a human gene index.
Jongeneel C.V., 2000. Bioinformatics, 16 (12) pp. 1059-1061.
[WoS][Pmid][serval:BIB_5010D15FC7A8]
Partagez:
Unicentre - CH-1015 Lausanne
Suisse
Tél. +41 21 692 11 11
Canton de Vaud
Swiss University