Department of Ecology and Evolution

Groupe Bertelsmeier | Groupe Chapuisat | Groupe Christe | Groupe Fumagalli | Groupe Goudet | Groupe Guisan | Groupe Kawecki | Groupe Lehmann | Groupe Mullon | Groupe Pannell | Groupe Robinson-Rechavi | Groupe Roulin | Groupe Sanders | Groupe Schwander | Groupe Van de Waal | Groupe Wedekind
Publications | Phd and Masters theses

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141 publications

2024 | 2023 | 2022 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 |
2024
Detecting inbreeding depression in structured populations.
Lavanchy E., Weir B.S., Goudet J., 2024/05/07. Proceedings of the National Academy of Sciences of the United States of America, 121 (19) pp. e2315780121. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_FDC1D721148F]
 
The genomic architecture of continuous plumage colour variation in the European barn owl (Tyto alba).
Cumer T., Machado A.P., San-Jose L.M., Ducrest A.L., Simon C., Roulin A., Goudet J., 2024/01/10. Proceedings. Biological sciences, 291 (2014) p. 20231995. Peer-reviewed.
[DOI][Pmid][serval:BIB_99791A2B3ED8]
2023
 
Effect of reduced genomic representation on using runs of homozygosity for inbreeding characterization.
Lavanchy E., Goudet J., 2023/05. Molecular ecology resources, 23 (4) pp. 787-802. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B16DA1524CF8]
Inferring genetic structure when there is little: population genetics versus genomics of the threatened bat Miniopterus schreibersii across Europe
Dufresnes Christophe, Dutoit Ludovic, Brelsford Alan, Goldstein-Witsenburg Fardo, Clément Laura, López-Baucells Adria, Palmeirim Jorge, Pavlinić Igor, Scaravelli Dino, Ševčík Martin et al., 2023/01. Scientific Reports, 13 (1) p. 1523. Peer-reviewed.
[URN][DOI][serval:BIB_6A33F7AE5231]
2022
Genomic basis of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands.
Cumer T., Machado A.P., Siverio F., Cherkaoui S.I., Roque I., Lourenço R., Charter M., Roulin A., Goudet J., 2022/11. Heredity, 129 (5) pp. 281-294. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5BDEC1710361]
How HLA diversity is apportioned: influence of selection and relevance to transplantation.
Maróstica A.S., Nunes K., Castelli E.C., Silva NSB, Weir B.S., Goudet J., Meyer D., 2022/06/06. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 377 (1852) p. 20200420. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_40FE833CC14F]
Genomic consequences of colonisation, migration and genetic drift in barn owl insular populations of the eastern Mediterranean.
Machado A.P., Topaloudis A., Cumer T., Lavanchy E., Bontzorlos V., Ceccherelli R., Charter M., Kassinis N., Lymberakis P., Manzia F. et al., 2022/03. Molecular ecology, 31 (5) pp. 1375-1388. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E06218648494]
Landscape and Climatic Variations Shaped Secondary Contacts amid Barn Owls of the Western Palearctic.
Cumer T., Machado A.P., Dumont G., Bontzorlos V., Ceccherelli R., Charter M., Dichmann K., Kassinis N., Lourenço R., Manzia F. et al., 2022/01/07. Molecular biology and evolution, 39 (1) pp. msab343. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4289DA16E19E]
Rank-invariant estimation of inbreeding coefficients.
Zhang Q.S., Goudet J., Weir B.S., 2022/01. Heredity, 128 (1) pp. 1-10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_22100793E635]
Unexpected post-glacial colonisation route explains the white colour of barn owls (Tyto alba) from the British Isles.
Machado A.P., Cumer T., Iseli C., Beaudoing E., Ducrest A.L., Dupasquier M., Guex N., Dichmann K., Lourenço R., Lusby J. et al., 2022/01. Molecular ecology, 31 (2) pp. 482-497. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_59DDCB29C598]
2020
Greater topoclimatic control of above- versus below-ground communities.
Mod H.K., Scherrer D., Di Cola V., Broennimann O., Blandenier Q., Breiner F.T., Buri A., Goudet J., Guex N., Lara E. et al., 2020/12. Global change biology, 26 (12) pp. 6715-6728. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_858D58CF6336]
Common garden experiments to study local adaptation need to account for population structure
Villemereuil Pierre, Gaggiotti Oscar E., Goudet Jérôme, 2020/10/15. Journal of Ecology, n/a (n/a). Peer-reviewed.
[URN][DOI][serval:BIB_07E8157C6B8F]
New genome assembly of the barn owl (Tyto alba alba).
Ducrest A.L., Neuenschwander S., Schmid-Siegert E., Pagni M., Train C., Dylus D., Nevers Y., Warwick Vesztrocy A., San-Jose L.M., Dupasquier M. et al., 2020/03. Ecology and evolution, 10 (5) pp. 2284-2298. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_83891497D9E8]
2019
 
Female-biased dispersal and non-random gene flow of MC1R variants do not result in a migration load in barn owls.
Ducret Valérie, Schaub Michael, Goudet Jérôme, Roulin Alexandre, 2019/03. Heredity, 122 (3) pp. 305-314. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A9C5242815C5]
QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time.
Neuenschwander S., Michaud F., Goudet J., 2019/03/01. Bioinformatics, 35 (5) pp. 886-888. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6D2F79671E91]
2018
How to estimate kinship.
Goudet J., Kay T., Weir B.S., 2018/10. Molecular ecology, 27 (20) pp. 4121-4135. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5FE0C333D531]
The Effect of Balancing Selection on Population Differentiation: A Study with HLA Genes.
Brandt DYC, César J., Goudet J., Meyer D., 2018/07/31. G3, 8 (8) pp. 2805-2815. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6EA8F8E383C5]
 
Sex-antagonistic genes, XY recombination and feminized Y chromosomes.
Cavoto E., Neuenschwander S., Goudet J., Perrin N., 2018/03. Journal of evolutionary biology, 31 (3) pp. 416-427. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F6C923B3D9F4]
 
The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.
Rolland J., Silvestro D., Schluter D., Guisan A., Broennimann O., Salamin N., 2018/03. Nature ecology & evolution, 2 (3) pp. 459-464. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C415C45047B]
 
A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast
Dexter E., Bollens S.M., Cordell J., Soh H.Y., Rollwagen-Bollens G., Pfeifer S.P., Goudet J., Vuilleumier S., 2018. Biological Invasions, 20 (6) pp. 1577-1595. Peer-reviewed.
[DOI][WoS][serval:BIB_50EFBE9D5327]
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
Kanitz R., Guillot E.G., Antoniazza S., Neuenschwander S., Goudet J., 2018. PLoS One, 13 (2) pp. e0192460. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_77ADA568BCF2]
Sex chromosome turnovers and genetic drift: a simulation study.
Saunders P.A., Neuenschwander S., Perrin N., 2018. Journal of Evolutionary Biology, 31 (9) pp. 1413-1419. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81445E80C6C9]
 
The Rocky Mountains as a dispersal barrier between barn owl (Tyto alba ) populations in North America
Machado A.P., Clément L., Uva V., Goudet J., Roulin A., 2018. Journal of Biogeography, 45 (6) pp. 1288-1300. Peer-reviewed.
[DOI][WoS][serval:BIB_C3FDE1E38C4C]
2017
 
Linking genomics and population genetics with R.
Paradis E., Gosselin T., Goudet J., Jombart T., Schliep K., 2017/04. Molecular ecology resources, 17 (1) pp. 54-66.
[DOI][Pmid][serval:BIB_90179BE9C8A4]
A Unified Characterization of Population Structure and Relatedness.
Weir B.S., Goudet J., 2017. Genetics, 206 (4) pp. 2085-2103. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8BDB2573B58A]
apex: phylogenetics with multiple genes.
Jombart T., Archer F., Schliep K., Kamvar Z., Harris R., Paradis E., Goudet J., Lapp H., 2017. Molecular Ecology Resources, 17 (1) pp. 19-26. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7D5430D54AEB]
Broad-Scale Genetic Diversity of Cannabis for Forensic Applications.
Dufresnes C., Jan C., Bienert F., Goudet J., Fumagalli L., 2017. PloS ONE, 12 (1) pp. e0170522. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BB573EC719C1]
 
Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters.
Sawers R.J., Svane S.F., Quan C., Grønlund M., Wozniak B., Gebreselassie M.N., González-Muñoz E., Chávez Montes R.A., Baxter I., Goudet J. et al., 2017. New Phytologist, 214 (2) pp. 632-643. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B4CD355DF3F3]
2016
 
Genomic Evidence for Adaptive Inversion Clines in Drosophila melanogaster.
Kapun M., Fabian D.K., Goudet J., Flatt T., 2016/05. Molecular biology and evolution, 33 (5) pp. 1317-1336. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1FEFE287CD2B]
 
How differential management strategies affect Ips typographus L. dispersal
Montano V., Bertheau C., Dolezal P., Krumböck S., Okrouhlík J., StaufferC. , Moodley Y., 2016. Forest Ecology and Management, 360 pp. 195-204.
[DOI][WoS][serval:BIB_823A4C39899B]
 
Population-specific FST values for forensic STR markers: A worldwide survey.
Buckleton J., Curran J., Goudet J., Taylor D., Thiery A., Weir B.S., 2016. Forensic Science International. Genetics, 23 pp. 91-100.
[DOI][WoS][Pmid][serval:BIB_9B3839201122]
Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations.
Rougemont Q., Roux C., Neuenschwander S., Goudet J., Launey S., Evanno G., 2016. PeerJ, 4 pp. e1910.
[URN][DOI][WoS][Pmid][serval:BIB_B3842DC657B0]
 
Sex-specific allelic transmission bias suggests sexual conflict at MC1R.
Ducret V., Gaigher A., Simon C., Goudet J., Roulin A., 2016. Molecular Ecology, 25 (18) pp. 4551-4563. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F2A86BE599BE]
The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean.
Burri R., Antoniazza S., Gaigher A., Ducrest A.L., Simon C., European Barn Owl Network, Fumagalli L., Goudet J., Roulin A., 2016. Evolution; International Journal of Organic Evolution, 70 (1) pp. 140-153. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8EA11C45B400]
2015
High Frequency Haplotypes are Expected Events, not Historical Figures.
Guillot E.G., Cox M.P., 2015. F1000Research, 4 p. 666.
[URN][DOI][Pmid][serval:BIB_8516AEED5D71]
How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared.
Witsenburg F., Clément L., López-Baucells A., Palmeirim J., Pavlinić I., Scaravelli D., ?evčík M. , Dutoit L., Salamin N., Goudet J. et al., 2015. Molecular Ecology, 24 (4) pp. 926-940. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FE6B0F222C7D]
Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data.
Brandt D.Y., Aguiar V.R., Bitarello B.D., Nunes K., Goudet J., Meyer D., 2015. G3 Genes Genomes Genetics, 5 (5) pp. 931-941.
[URN][DOI][WoS][Pmid][serval:BIB_0899CA1A59F7]
 
The interplay of spatial and climatic landscapes in the genetic distribution of a South American parrot
Masello J.F., Montano V., Quillfeldt P., Nuhlíčková S., Wikelski M., Moodley Y., 2015. Journal of Biogeography, 42 (6) pp. 1077-1090.
[DOI][WoS][serval:BIB_A9C854A84048]
 
Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori.
Montano V., Didelot X., Foll M., Linz B., Reinhardt R., Suerbaum S., Moodley Y., Jensen J.D., 2015. Genetics, 200 (3) pp. 947-963.
[DOI][WoS][Pmid][serval:BIB_47F6F7C61DFD]
2014
Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in Grapevine.
Fodor A., Segura V., Denis M., Neuenschwander S., Fournier-Level A., Chatelet P., Homa F.A., Lacombe T., This P., Le Cunff L., 2014. PLoS One, 9 (11) pp. e110436. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AB7E9EC65F1]
 
Natural selection in a postglacial range expansion: the case of the colour cline in the European barn owl.
Antoniazza S., Kanitz R., Neuenschwander S., Burri R., Gaigher A., Roulin A., Goudet J., 2014. Molecular Ecology, 23 (22) pp. 5508-5523. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A02C8265EEBB]
 
On the transition of genetic differentiation from isolation to panmixia: What we can learn from GST and D.
Alcala N., Goudet J., Vuilleumier S., 2014. Theoretical Population Biology, 93 pp. 75-84. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B0995AAC3D7]
 
Sex-chromosome turnovers: the hot-potato model.
Blaser O., Neuenschwander S., Perrin N., 2014. American Naturalist, 183 (1) pp. 140-146. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C2F255A0AE23]
 
Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps.
Pellissier L., Niculita-Hirzel Hélène, Dubuis A., Pagni M., Guex N., Ndiribe C., Salamin N., Xenarios I., Goudet J., Sanders I.R. et al., 2014. Molecular Ecology, 23 (17) pp. 4274-4290. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_32F6B5977780]
 
Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in Aegilops triuncialis.
Pajkovic M., Lappe S., Barman R., Parisod C., Neuenschwander S., Goudet J., Alvarez N., Guadagnuolo R., Felber F., Arrigo N., 2014. Molecular Ecology, 23 (20) pp. 5089-5101. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F38A9A03E51F]
2013
Density-based hierarchical clustering of pyro-sequences on a large scale--the case of fungal ITS1.
Pagni M., Niculita-Hirzel Hélène, Pellissier L., Dubuis A., Xenarios I., Guisan A., Sanders I.R., Goudet J., Guex N., 2013. Bioinformatics, 29 (10) pp. 1268-1274. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AA89A39C702D]
 
Evolutionary history of almond tree domestication in the Mediterranean basin.
Delplancke M., Alvarez N., Benoit L., Espíndola A., I Joly H., Neuenschwander S., Arrigo N., 2013. Molecular Ecology, 22 (4) pp. 1092-1104. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_518F08C4D8E8]
 
Peak and persistent excess of genetic diversity following an abrupt migration increase.
Alcala N., Streit D., Goudet J., Vuilleumier S., 2013. Genetics, 193 (3) pp. 953-971. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_618695282245]
Plant species distributions along environmental gradients: do belowground interactions with fungi matter?
Pellissier L., Pinto-Figueroa E., Niculita-Hirzel Hélène, Moora M., Villard L., Goudet J., Guex N., Pagni M., Xenarios I., Sanders I. et al., 2013. Frontiers In Plant Science, 4 (500) p. 500. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A4BFB3D30FC4]
 
Sex-chromosome turnovers induced by deleterious mutation load.
Blaser O., Grossen C., Neuenschwander S., Perrin N., 2013. Evolution, 67 (3) pp. 635-645. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E41CACA16176]
2012
 
Genetic basis of adaptation in Arabidopsis thaliana: local adaptation at the seed dormancy QTL DOG1.
Kronholm I., Picó F.X., Alonso-Blanco C., Goudet J., de Meaux J., 2012. Evolution, 66 (7) pp. 2287-2302.
[DOI][WoS][Pmid][serval:BIB_4733FA7E58F4]
Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration.
Dreiss A.N., Antoniazza S., Burri R., Fumagalli L., Sonnay C., Frey C., Goudet J., Roulin A., 2012. Journal of Evolutionary Biology, 25 (1) pp. 103-114. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0BED6C671908]
 
Plants and tortoises: mutations in the Arabidopsis jasmonate pathway increase feeding in a vertebrate herbivore.
Mafli A., Goudet J., Farmer E.E., 2012. Molecular Ecology, 21 (10) pp. 2534-2541.
[DOI][WoS][Pmid][serval:BIB_B191B2CB71CD]
Similarity in food cleaning techniques within matrilines in wild vervet monkeys.
van de Waal E., Krützen M., Hula J., Goudet J., Bshary R., 2012. PLoS One, 7 (4) pp. e35694.
[URN][DOI][WoS][Pmid][serval:BIB_E2B335EB08D5]
 
The balanced lethal system of crested newts: a ghost of sex chromosomes past?
Grossen C., Neuenschwander S., Perrin N., 2012. American Naturalist, 180 (6) pp. E174-E183. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_38CA0C260197]
 
The evolution of XY recombination: sexually antagonistic selection versus deleterious mutation load.
Grossen C., Neuenschwander S., Perrin N., 2012. Evolution, 66 (10) pp. 3155-3166. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5C77F2084812]
2011
 
Ecology and life history affect different aspects of the population structure of 27 high-alpine plants.
Meirmans P.G., Goudet J., IntraBioDiv Consortium, Gaggiotti O.E., Gaggiotti O.E., 2011. Molecular Ecology, 20 (15) pp. 3144-3155.
[DOI][WoS][Pmid][serval:BIB_DE5129C66E3A]
 
Fine-scale spatial genetic structure and gene dispersal in Silene latifolia.
Barluenga M., Austerlitz F., Elzinga J.A., Teixeira S., Goudet J., Bernasconi G., 2011. Heredity, 106 (1) pp. 13-24.
[DOI][WoS][Pmid][serval:BIB_2F41EA668646]
 
Global invasion history of the fire ant Solenopsis invicta.
Ascunce M.S., Yang C.C., Oakey J., Calcaterra L., Wu W.J., Shih C.J., Goudet J., Ross K.G., Shoemaker D., 2011. Science, 331 (6020) pp. 1066-1068. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DFDC96C93A01]
 
On the maintenance of sex-chromosome polymorphism by sex-antagonistic selection
Blaser O., Neuenschwander S., Perrin N., 2011. American Naturalist, 178 (4) pp. 515-524. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_16087D661A53]
Owl melanin-based plumage redness is more frequent near than away from the equator: implications on the effect of climate change on biodiversity
Roulin A., Burri R., Antoniazza S., 2011. Biological Journal of the Linnean Society, 102 (3) pp. 573-582. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_F7DC80473AF1]
Spatial variation in the temporal change of male and female melanic ornamentation in the barn owl.
Roulin A., Antoniazza S., Burri R., 2011. Journal of Evolutionary Biology, 24 (7) pp. 1403-1409. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A037342B17FB]
 
Temperature-dependent turnovers in sex-determination mechanisms: a quantitative model.
Grossen C., Neuenschwander S., Perrin N., 2011. Evolution, 65 (1) pp. 64-78. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B977C469C445]
2010
ABCtoolbox: a versatile toolkit for approximate Bayesian computations.
Wegmann D., Leuenberger C., Neuenschwander S., Excoffier L., 2010. BMC Bioinformatics, 11 (1) p. 116.
[URN][DOI][WoS][Pmid][serval:BIB_C966F74A3943]
 
Evolution in heterogeneous populations: from migration models to fixation probabilities.
Vuilleumier S., Goudet J., Perrin N., 2010. Theoretical Population Biology, 78 (4) pp. 250-258. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7AD8023F8A7F]
 
Genetic isolation of insular populations of the Maghrebian bat, Myotis punicus, in the Mediterranean Basin
Biollaz F., Bruyndonckx N., Beuneux G., Mucedda M., Goudet J., Christe P., 2010. Journal of Biogeography, 37 (8) pp. 1557-1569. Peer-reviewed.
[DOI][WoS][serval:BIB_B62613603585]
 
Local adaptation maintains clinal variation in melanin-based coloration of European barn owls (Tyto alba).
Antoniazza S., Burri R., Fumagalli L., Goudet J., Roulin A., 2010. Evolution, 64 (7) pp. 1944-1954. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E42CFD9C015F]
Mites as biological tags of their hosts.
Bruyndonckx N., Biollaz F., Dubey S., Goudet J., Christe P., 2010. Molecular Ecology, 19 (13) pp. 2770-2778. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D966377DF2E6]
 
Repeated unidirectional introgression towards Populus balsamifera in contact zones of exotic and native poplars.
Thompson S.L., Lamothe M., Meirmans P.G., Périnet P., Isabel N., 2010. Molecular ecology, 19 (1) pp. 132-145. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_11066A42A531]
2009
A metapopulation model for the introgression from genetically modified plants into their wild relatives
Meirmans P.G., Bousquet J., Isabel N., 2009. Evolutionary Applications, 2 (2) pp. 160-171. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_501F4A24B136]
 
Correlated evolution of mating strategy and inbreeding depression within and among populations of the hermaphroditic snail Physa acuta
Escobar J. S., Facon B., Jarne P., Goudet J., David P., 2009. Evolution, 63 (11) pp. 2790-2804. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_34DCF9ADD02E]
 
How accurate is the current picture of human genetic variation?
Romero I.G., Manica A., Goudet J., Handley L.L., Balloux F., 2009. Heredity, 102 (2) pp. 120-126. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_72C2E71E17C9]
Inferring recent migration rates from individual genotypes.
Broquet T., Yearsley J., Hirzel A.H., Goudet J., Perrin N., 2009. Molecular Ecology, 18 (6) pp. 1048-1060. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C49920CF49F5]
Parallel changes in genetic diversity and species diversity following a natural disturbance.
Evanno G., Castella E., Antoine C., Paillat G., Goudet J., 2009. Molecular Ecology, 18 (6) pp. 1137-1144. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B2FEB086B4C]
 
Reduced genetic diversity, increased isolation and multiple introductions of invasive giant hogweed in the western Swiss Alps.
Henry P., Le Lay G., Goudet J., Guisan A., Jahodová S., Besnard G., 2009. Molecular Ecology, 18 (13) pp. 2819-2831. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4A615D986BE]
2008
A set of primers for plastid indels and nuclear microsatellites in the invasive plant Heracleum mantegazzianum (Apiaceae) and their transferability to Heracleum sphondylium
Henry P., Provan J., Goudet J., Guisan A., Jahadová S., Besnard G., 2008. Molecular Ecology Resources, 8 (1) pp. 161-163. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_62FC307DCE24]
 
Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): Inference under a Bayesian spatially explicit framework.
Neuenschwander S Largiadèr CR Ray N Currat M Vonlanthen P Excoffier Laurent, 2008. Molecular Ecology, 17 (3) pp. 757-772.
[DOI][WoS][serval:BIB_F50210AA184F]
Effects of selection and drift on G matrix evolution in a heterogeneous environment: a multivariate Qst-Fst Test with the freshwater snail Galba truncatula.
Chapuis E., Martin G., Goudet J., 2008. Genetics, 180 (4) pp. 2151-2161. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_026C1A076D49]
Gender-role alternation in the simultaneously hermaphroditic freshwater snail Physa acuta: not with the same partner
Facon B., Ravigne V., Goudet J., 2008. Behavioral Ecology and Sociobiology, 62 (5) pp. 713-720. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_1B0C2093A46F]
Multivariate QST-FST comparisons: a neutrality test for the evolution of the g matrix in structured populations.
Martin G., Chapuis E., Goudet J., 2008. Genetics, 180 (4) pp. 2135-2149. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2B2234DC8EC4]
quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.
Neuenschwander S., Hospital F., Guillaume F., Goudet J., 2008. Bioinformatics, 24 (13) pp. 1552-1553. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DD30BF02D4FC]
 
Reply: Reply to Garrigan and Hammer: Ancient lineages and assimilation
Fagundes N J R, Ray N, Beaumont M, Neuenschwander S, Salzano F M, Bonatto S L & Excoffier L , 2008. Proceedings of the National Academy of Sciences USA, 105 pp. E4. Peer-reviewed.
[serval:BIB_3E25B8F43F9E]
2007
A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels.
de Meeûs T., Goudet J., 2007. Infection, Genetics and Evolution, 7 (6) pp. 731-735.
[URN][DOI][WoS][Pmid][serval:BIB_5DFC9D7C6559]
Distributions of epistasis in microbes fit predictions from a fitness landscape model.
Martin G., Elena S.F., Lenormand T., 2007. Nature Genetics, 39 (4) pp. 555-560.
[URN][DOI][WoS][Pmid][serval:BIB_E1D931699142]
Effect of mating history on gender preference in the hermaphroditic snail physa acuta
Facon B., Sauteur L., Ravigne V., Goudet J., 2007. Animal Behaviour, 74 (5) pp. 1455-1461. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_6776D33B87DD]
 
Genetic analysis of potential postglacial watershed crossings in Central Europe by the bullhead (Cottus gobio L.).
Vonlanthen P., Excoffier L., Bittner D., Persat H., Neuenschwander S., Largiadèr C.R., 2007. Molecular Ecology, 16 (21) pp. 4572-4584. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1A8A5BC8CFC3]
Going the distance: human population genetics in a clinal world.
Handley L.J., Manica A., Goudet J., Balloux F., 2007. Trends in Genetics, 23 (9) pp. 432-439.
[URN][DOI][WoS][Pmid][serval:BIB_B0CA510362E4]
High quantitative and no molecular differentiation of a freshwater snail (Galba truncatula) between temporary and permanent water habitats.
Chapuis E., Trouve S., Facon B., Degen L., Goudet J., 2007. Molecular Ecology, 16 (16) pp. 3484-3496. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D30B07CE22CD]
Reliable selfing rate estimates from imperfect population genetic data.
David P., Pujol B., Viard F., Castella V., Goudet J., 2007. Molecular Ecology, 16 (12) pp. 2474-2487. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E90FEDBC69C3]
 
Statistical evaluation of alternative models of human evolution.
Fagundes N.J., Ray N., Beaumont M., Neuenschwander S., Salzano F.M., Bonatto S.L., Excoffier L., 2007. Proceedings of the National Academy of Sciences of the United States of America, 104 (45) pp. 17614-17619. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_131A12AF1402]
Under neutrality, Q(ST) < or = F(ST) when there is dominance in an island model.
Goudet J., Martin G., 2007. Genetics, 176 (2) pp. 1371-1374.
[URN][DOI][WoS][Pmid][serval:BIB_BCB0C99444FA]
2006
 
AQUASPLATCHE: A program to simulate genetic diversity in populations living in linear habitats.
Neuenschwander S., 2006. Molecular Ecology Notes, 6 (3) pp. 583-585. Peer-reviewed.
[WoS][serval:BIB_2C277E37E7FB]
Evolutionary aspects of population structure for molecular and quantitative traits in the freshwater snail Radix balthica.
Evanno G., Castella E., Goudet J., 2006. Journal of Evolutionary Biology, 19 (4) pp. 1071-1082.
[URN][DOI][WoS][Pmid][serval:BIB_F9701EAA205A]
Experimental evidence of inbreeding avoidance in the hermaphroditic snail Physa acuta
Facon B., Ravigne V., Goudet J., 2006. Evolutionary Ecology, 20 (5) pp. 395-406. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_7C5641FA6124]
Inbreeding effects on progeny sex ratio and gender variation in the gynodioecious Silene vulgaris (Caryophyllaceae).
Glaettli M., Goudet J., 2006. New Phytologist, 172 (4) pp. 763-773.
[URN][DOI][WoS][Pmid][serval:BIB_2D31B79043C0]
Nemo: An evolutionary and population genetics programming framework
Guillaume F., Rougemont J., 2006. Bioinformatics - Applications Note, 22 (20) pp. 2556-2557.
[URN][serval:BIB_4DE474421AD9]
Proximity-dependent pollen performance in Silene vulgaris.
Glaettli M., Pescatore L., Goudet J., 2006. Annals of Botany, 98 (2) pp. 431-437.
[URN][DOI][WoS][Pmid][serval:BIB_01DF9980EA20]
The effects of dominance, regular inbreeding and sampling design on Q(ST), an estimator of population differentiation for quantitative traits.
Goudet J., Büchi L., 2006. Genetics, 172 (2) pp. 1337-1347.
[URN][DOI][WoS][Pmid][serval:BIB_90AE390C271E]
Variation in the intensity of inbreeding depression among successive life-cycle stages and generations in gynodioecious Silene vulgaris (Caryophyllaceae).
Glaettli M., Goudet J., 2006. Journal of Evolutionary Biology, 19 (6) pp. 1995-2005.
[URN][DOI][WoS][Pmid][serval:BIB_116DDAD66D32]
2005
 
Recurrent evolution of host-specialized races in a globally distributed parasite
McCoy Karen D, Chapuis Elodie, Tirard Claire, Boulinier Thierry, Michalakis Yannis, Bohec Céline Le, Maho Yvon Le, Gauthier-Clerc Michel, 2005/11/22. Proceedings of the Royal Society B: Biological Sciences, 272 (1579) pp. 2389-2395.
[URN][DOI][WoS][Pmid][serval:BIB_0D103D0031A4]
 
Multiple paternity and postcopulatory sexual selection in a hermaphrodite: what influences sperm precedence in the garden snail Helix aspersa?
Evanno G., Madec L., Arnaud JF, 2005/02/07. Molecular Ecology, 14 (3) pp. 805-812.
[URN][DOI][WoS][Pmid][serval:BIB_E10C6A0D561D]
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.
Evanno G., Regnaut S., Goudet J., 2005. Molecular Ecology, 14 (8) pp. 2611-2620. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2B5D8C9C02FA]
Ecological components and evolution of selfing in the freshwater snail Galba truncatula.
Trouve S., Degen L., Goudet J., 2005. Journal of Evolutionary Biology, 18 (2) pp. 358-370.
[URN][DOI][WoS][Pmid][serval:BIB_3193A7508BEF]
Heterozygote advantage and the maintenance of polymorphism for multilocus traits.
Ding A., Goudet J., 2005. Theoretical Population Biology, 68 (3) pp. 157-166.
[URN][DOI][WoS][Pmid][serval:BIB_62EBE7A789A7]
HIERFSTAT, a package for R to compute and test hierarchical F-statistics
Goudet J., 2005. Molecular Ecology Notes, 5 (1) pp. 184-186. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_80854C1ACF59]
2004
 
High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi.
Koch A.M., Kuhn G., Fontanillas P., Fumagalli L., Goudet J., Sanders I.R., 2004. Proceedings of the National Academy of Sciences of the United States of America, 101 (8) pp. 2369-2374. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_68F45AA1F8AA]
Synergistic epistasis and alternative hypotheses.
Trouve S., Ding A., Goudet J., 2004. Journal of Evolutionary Biology, 17 (6) pp. 1400-1401.
[URN][DOI][WoS][Pmid][serval:BIB_0CCC43CD5BC3]
2003
Evolutionary implications of a high selfing rate in the freshwater snail Lymnaea truncatula.
Trouvé S., Degen L., Renaud F., Goudet J., 2003. Evolution, 57 (10) pp. 2303-2314.
[URN][DOI][WoS][Pmid][serval:BIB_393B33A0BFD7]
 
Isolation and characterization of highly polymorphic microsatellite loci in the bladder campion, Silene vulgaris (Caryophyllaceae)
Juillet N., Freymond H., Degen L., Goudet J., 2003. Molecular Ecology Notes, 3 (3) pp. 358-359. Peer-reviewed.
[DOI][WoS][serval:BIB_A75A06F0E2FD]
The additive genetic variance after bottlenecks is affected by the number of loci involved in epistatic interactions.
Naciri-Graven Y., Goudet J., 2003. Evolution;, 57 (4) pp. 706-716.
[URN][DOI][WoS][Pmid][serval:BIB_33D5CEB2489E]
2002
 
The estimation of population differentiation with microsatellite markers
Balloux F., Lugon-Moulin N., 2002/02. Molecular Ecology, 11 (2) pp. 155-165.
[DOI][WoS][serval:BIB_FEF6A4A7430F]
Geographical and altitudinal population genetic structure of two dung fly species with contrasting mobility and temperature preference.
Kraushaar U., Goudet J., Blanckenhorn W.U., 2002. Heredity, 89 (2) pp. 99-106.
[URN][DOI][Pmid][serval:BIB_A3FED0DC66B8]
Statistical properties of population differentiation estimators under stepwise mutation in a finite island model.
Balloux F., Goudet J., 2002. Molecular Ecology, 11 (4) pp. 771-783.
[URN][DOI][WoS][Pmid][serval:BIB_E1CAC8C9DA6B]
Tests for sex-biased dispersal using bi-parentally inherited genetic markers.
Goudet J., Perrin N., Waser P., 2002. Molecular Ecology, 11 (6) pp. 1103-1114. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3B367304590B]
The correlation between inbreeding and fitness: does allele size matter?
Goudet J., Keller L., 2002. Trends in Ecology and Evolution, 17 (5) pp. 201-202. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_1BD02892EAAF]
2001
Sex-biased dispersal in a migratory bat: a characterization using sex-specific demographic parameters.
Petit E., Balloux F., Goudet J., 2001/03. Evolution, 55 (3) pp. 635-640.
[URN][DOI][WoS][Pmid][serval:BIB_54E9B0854547]
Inbreeding, kinship, and the evolution of natal dispersal
Perrin N., Goudet J., 2001. pp. 123-142 dans Clobert J. et al. (eds.) Dispersal chap. 9, Oxford University Press.
[URN][serval:BIB_4165DCE77FBC]
2000
Adaptive diversity in heterogeneous environments for populations regulated by a mixture of soft and hard selection
de Meeûs T., Goudet J., 2000. Evolutionary Ecology Research, 2 (8) pp. 981-995. Peer-reviewed.
[URN][WoS][serval:BIB_A995585E2725]
Microsatellites can be misleading: an empirical and simulation study.
Balloux F., Brünner H., Lugon-Moulin N., Hausser J., Goudet J., 2000. Evolution, 54 (4) pp. 1414-1422.
[URN][DOI][WoS][Pmid][serval:BIB_08574EED056C]
 
Microsatellites in the hermaphroditic snail, Lymnaea truncatula, intermediate host of the liver fluke, Fasciola hepatica.
Trouvé S., Degen L., Meunier C., Tirard C., Hurtrez-Boussès S., Durand P., Guégan J.F., Goudet J., Renaud F., 2000. Molecular Ecology, 9 (10) pp. 1662-1664.
[DOI][WoS][Pmid][serval:BIB_175310741A93]
1999
An improved procedure for testing the effects of key innovations on rate of speciation
Goudet J., 1999. American Naturalist, 153 (5) pp. 549-555. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_8390B679C058]
Do riverine barriers, history or introgression shape the genetic structuring of a common shrew (Sorex araneus) population?
Lugon-Moulin N., Brunner H., Balloux F., Hausser J., Goudet J., 1999. Heredity, 83 (2) pp. 155-161.
[URN][DOI][WoS][Pmid][serval:BIB_A9EA84FE5968]
 
Genetic structure of the genus Leptospira by multilocus enzyme electrophoresis
Letocart M., Boerlin P., Boerlin-Petzold F., Goudet J., Baranton G., Perolat P., 1999. International Journal of Systematic Bacteriology, 49 (1) pp. 231-238. Peer-reviewed.
[DOI][WoS][serval:BIB_58104EE321AE]
Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora : Soricidae)
Lugon-Moulin N., Brunner H., Wyttenbach A., Hausser J., Goudet J., 1999. Molecular Ecology, 8 (3) pp. 419-431. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_551E000D9260]
 
Microsatellite variation reveals low genetic subdivision in a chromosome race of Sorex araneus (Mammalia, Insectivora)
Wyttenbach A., Goudet J., Cornuet J. M., Hausser J., 1999. Journal of Heredity, 90 (2) pp. 323-327. Peer-reviewed.
[DOI][WoS][serval:BIB_8F6971FF2275]
1998
Breeding system and genetic variance in the monogamous, semi-social shrew, Crocidura russula
Balloux F., Goudet J., Perrin N., 1998. Evolution, 52 (4) pp. 1230-1235. Peer-reviewed.
[URN][WoS][serval:BIB_7A2B89BD9CE8]
Microsatellite conservation, polymorphism, and GC content in shrews of the genus Sorex (Insectivora, Mammalia)
Balloux F., Ecoffey E., Fumagalli L., Goudet J., Wyttenbach A., Hausser J., 1998. Molecular Biology and Evolution, 15 (4) pp. 473-475. Peer-reviewed.
[URN][WoS][Pmid][serval:BIB_E06969157BDB]
Rate of gene sequence evolution and species diversification in flowering plants: a re-evaluation
Savolainen V., Goudet J., 1998. Proceedings of the Royal Society of London Series B-Biological Sciences, 265 (1396) pp. 603-607. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_4C980DB25D5C]
Restricted gene flow and subpopulation differentiation in Silene dioica
Giles B. E., Lundqvist E., Goudet J., 1998. Heredity, 80 (6) pp. 715-723. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_623A64B69CB3]
1997
 
Case study of genetic structure in a plant metapopulation
Giles B. E., Goudet J., 1997. pp. 429-454 dans Hanski I., Gilpin M. E. (eds.) Metapopulation biology : ecology, genetics, and evolution, Academic Press.
[serval:BIB_B5632EFEC37A]
Female-biased dispersal in the monogamous mammal Crocidura russula: evidence from field data and microsatellite patterns.
Favre L., Balloux F., Goudet J., Perrin N., 1997. Proceedings of the Royal Society of London Series B-Biological Sciences, 264 (1378) pp. 127-132.
[URN][DOI][WoS][Pmid][serval:BIB_80749BBC0650]
Genetic differentiation in Silene dioica metapopulations: estimation of spatiotemporal effects in a successional plant species
Giles B.E., Goudet J., 1997. American Naturalist, 149 (3) pp. 507-526. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_951]
Microsatellites reveal high population viscosity and limited dispersal in the ant Formica paralugubris
Chapuisat M., Goudet J., Keller L., 1997. Evolution, 51 (2) pp. 475-482. Peer-reviewed.
[URN][WoS][serval:BIB_750DB5874B16]
1996
 
Genetic differentiation of continental and island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe.
Estoup A., Solignac M., Cornuet J.M., Goudet J., Scholl A., 1996. Molecular Ecology, 5 (1) pp. 19-31.
[DOI][WoS][Pmid][serval:BIB_872659BF8A55]
 
Genetic structure of a linear population of Beta vulgaris ssp maritima (sea beet) revealed by isozyme and RFLP analysis
Raybould A. F., Goudet J., Mogg R. J., Gliddon C. J., Gray A. J., 1996. Heredity, 76 (2) pp. 111-117. Peer-reviewed.
[DOI][WoS][serval:BIB_52F65FDAFC81]
 
Study of gene flow through a hybrid zone in the common shrew (Sorex araneus) using microsatellites
Lugon-Moulin N., Wyttenbach A., Brunner H., Goudet J., Hausser J., 1996. Hereditas, 125 (2-3) pp. 159-168. Peer-reviewed.
[DOI][WoS][serval:BIB_1F367C3D04F0]
Testing differentiation in diploid populations.
Goudet J., Raymond M., de Meeûs T., Rousset F., 1996. Genetics, 144 (4) pp. 1933-1940.
[URN][WoS][Pmid][serval:BIB_ECADBA52FB9D]
 
Typing Candida albicans oral isolates from human immunodeficiency virus-infected patients by multilocus enzyme electrophoresis and DNA fingerprinting.
Boerlin P., Boerlin-Petzold F., Goudet J., Durussel C., Pagani J.L., Chave J.P., Bille J., 1996. Journal of Clinical Microbiology, 34 (5) pp. 1235-1248.
[WoS][Pmid][serval:BIB_8E6C153AA237]
1995
 
FSTAT (Version 1.2): A computer program to calculate F-statistics
Goudet J., 1995. Journal of Heredity, 86 (6) pp. 485-486. Peer-reviewed.
[WoS][serval:BIB_73A1262D31C2]
1994
 
Evolution in structured populations
Perrin N., Keller L., Goudet J., 1994. Bulletin de la Société Vaudoise de Sciences Naturelles, 83 (2) pp. 153-174. Peer-reviewed.
[serval:BIB_65CD54A868A6]
 
The genetic structure of metapopulations and conservation biology.
Gliddon C., Goudet J., 1994. EXS, 68 pp. 107-114.
[WoS][Pmid][serval:BIB_AE08ACC63D00]
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