Direction innovation et recherche clinique

Equipe principale
Publications | Mémoires et thèses

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46 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 |
2024
Physical activity and lung function association in a healthy community-dwelling European population.
Collaud S., Touilloux B., von Garnier C., Marques-Vidal P., Kraege V., 2024/04/08. BMC pulmonary medicine, 24 (1) p. 169. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_01DBEEFBDF7F]
Signaling via a CD27-TRAF2-SHP-1 axis during naive T cell activation promotes memory-associated gene regulatory networks.
Jaeger-Ruckstuhl C.A., Lo Y., Fulton E., Waltner O.G., Shabaneh T.B., Simon S., Muthuraman P.V., Correnti C.E., Newsom O.J., Engstrom I.A. et al., 2024/02/13. Immunity, 57 (2) pp. 287-302.e12. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A730B5E1D986]
 
Face au désenchantement des étudiants en médecine, les facultés sont prêtes à innover.
Geissbühler A., Pascual M., 2024/01/17. Revue medicale suisse, 20 (856-7) pp. 5-8. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_9DDE7D621604]
 
Day Admission Surgery Program in a Prospective Payment System: What Are the Financial Incentives?
Grass F., Roth-Kleiner M., Demartines N., Agri F., 2024. Health services insights, 17 p. 11786329231222970. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F3FE03311165]
2023
Correction: The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Nakas C.T., Raisaro J.L., Leichtle A.B., 2023/12/07. Journal of medical Internet research, 25 pp. e54809. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D10A3F7A7AC7]
 
Development of a Predictive Model for Hospital-Acquired Pressure Injuries.
Pouzols S., Despraz J., Mabire C., Raisaro J.L., 2023/11/01. Computers, informatics, nursing, 41 (11) pp. 884-891. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9BAB8C75537C]
 
The BioRef Infrastructure, a Framework for Real-Time, Federated, Privacy-Preserving, and Personalized Reference Intervals: Design, Development, and Application.
Blatter T.U., Witte H., Fasquelle-Lopez J., Theodoros Naka C., Raisaro J.L., Leichtle A.B., 2023/10/18. Journal of medical Internet research, 25 pp. e47254. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2525DF90BB64]
Complementary and Integrative Medicine: a plea for a better resource allocation by the SwissDRG grouping algorithm.
Grass F., Berna C., Vogel C.A., Demartines N., Agri F., 2023/10/03. Swiss medical weekly, 153 p. 40130. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B65591CF4D4]
 
Single-cell protein expression profiling resolves circulating and resident memory T cell diversity across tissues and infection contexts.
Evrard M., Becht E., Fonseca R., Obers A., Park S.L., Ghabdan-Zanluqui N., Schroeder J., Christo S.N., Schienstock D., Lai J. et al., 2023/07/11. Immunity, 56 (7) pp. 1664-1680.e9. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_203407FABD48]
The Statistical Analysis of the Varying Brain.
Chén Oliver Y., Thanh Vũ Duy, Greub Gilbert, Cao Hengyi, He Xingru, Muller Yannick, Petrovas Constantinos, Shou Haochang, Nguyen Viet-Dung, Zhi Bangdong et al., 2023/07/02. IEEE Statistical Signal Processing (SSP). Peer-reviewed.
[URN][DOI][WoS][serval:BIB_C6B3B6AA1F8B]
FAIRification of health-related data using semantic web technologies in the Swiss Personalized Health Network.
Touré V., Krauss P., Gnodtke K., Buchhorn J., Unni D., Horki P., Raisaro J.L., Kalt K., Teixeira D., Crameri K. et al., 2023/03/10. Scientific data, 10 (1) p. 127. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6FDF148812F2]
 
An End-to-End Natural Language Processing Application for Prediction of Medical Case Coding Complexity: Algorithm Development and Validation.
Xu H.A., Maccari B., Guillain H., Herzen J., Agri F., Raisaro J.L., 2023/01/19. JMIR medical informatics, 11 pp. e38150. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C7EA8C0FFC35]
2022
The Immune Signatures data resource, a compendium of systems vaccinology datasets.
Diray-Arce J., Miller HER, Henrich E., Gerritsen B., Mulè M.P., Fourati S., Gygi J., Hagan T., Tomalin L., Rychkov D. et al., 2022/10/20. Scientific data, 9 (1) p. 635. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FDA7293F77B9]
 
Cohort Profile: Swiss BioRef: The building blocks of a nationwide IT infrastructure in Switzerland for generating precise reference intervals
Blatter Tobias U., Witte Harald, Fasquelle-Lopez Jules, Raisaro Jean Louis, Leichtle Alexander B., 2022/08/31..
[DOI][serval:BIB_49A8D897D896]
 
An Ontology and Data Converter from RDF to the i2b2 Data Model.
Fasquelle-Lopez Jules, Raisaro Jean Louis, 2022/05/25. Studies in health technology and informatics, 294 pp. 372-376. Peer-reviewed.
[DOI][Pmid][serval:BIB_72539EF61E24]
 
Generation and Evaluation of Synthetic Data in a University Hospital Setting.
Kaabachi B., Despraz J., Meurers T., Prasser F., Raisaro J.L., 2022/05/25. Studies in health technology and informatics, 294 pp. 141-142. Peer-reviewed.
[DOI][Pmid][serval:BIB_FF74F4A9D504]
 
Multiple early factors anticipate post-acute COVID-19 sequelae.
Su Y., Yuan D., Chen D.G., Ng R.H., Wang K., Choi J., Li S., Hong S., Zhang R., Xie J. et al., 2022/03/03. Cell, 185 (5) pp. 881-895.e20. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_296B705072A0]
IDEAS: individual level differential expression analysis for single-cell RNA-seq data.
Zhang M., Liu S., Miao Z., Han F., Gottardo R., Sun W., 2022/01/24. Genome biology, 23 (1) p. 33. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B48AF13F6F91]
Transcriptional correlates of malaria in RTS,S/AS01-vaccinated African children: a matched case-control study.
Moncunill G., Carnes J., Chad Young W., Carpp L., De Rosa S., Campo J.J., Nhabomba A., Mpina M., Jairoce C., Finak G. et al., 2022/01/21. eLife, 11 pp. e70393. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_807A74E7EF22]
 
Single-cell immunology of SARS-CoV-2 infection.
Tian Y., Carpp L.N., Miller HER, Zager M., Newell E.W., Gottardo R., 2022/01. Nature biotechnology, 40 (1) pp. 30-41. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F4C681A1F5A5]
The deficiency in Th2-like Tfh cells affects the maturation and quality of HIV-specific B cell response in viremic infection.
Noto A., Suffiotti M., Joo V., Mancarella A., Procopio F.A., Cavet G., Leung Y., Corpataux J.M., Cavassini M., Riva A. et al., 2022. Frontiers in immunology, 13 p. 960120. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3A9147719CB5]
2021
New interpretable machine-learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy.
Greene E., Finak G., D'Amico L.A., Bhardwaj N., Church C.D., Morishima C., Ramchurren N., Taube J.M., Nghiem P.T., Cheever M.A. et al., 2021/12/10. Patterns, 2 (12) p. 100372. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4AF9E6EB0D95]
Author Correction: Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption
Froelicher David, Troncoso-Pastoriza Juan R., Raisaro Jean Louis, Cuendet Michel A., Sousa Joao Sa, Cho Hyunghoon, Berger Bonnie, Fellay Jacques, Hubaux Jean-Pierre, 2021/12. Nature Communications, 12 (1). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BA7A4545F831]
Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption.
Froelicher D., Troncoso-Pastoriza J.R., Raisaro J.L., Cuendet M.A., Sousa J.S., Cho H., Berger B., Fellay J., Hubaux J.P., 2021/10/11. Nature communications, 12 (1) p. 5910. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3683F2C63090]
 
Use and Effectiveness of Sperm Cryopreservation for Adolescents and Young Adults: A 37-Year Bicentric Experience.
Adam C., Deffert C., Leyvraz C., Primi M.P., Simon J.P., Beck Popovic M., Bénard J., Bouthors T., Girardin C., Streuli I. et al., 2021/02. Journal of adolescent and young adult oncology, 10 (1) pp. 78-84. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_11FA9C76B3DF]
2020
SCOR: A secure international informatics infrastructure to investigate COVID-19.
Raisaro J.L., Marino F., Troncoso-Pastoriza J., Beau-Lejdstrom R., Bellazzi R., Murphy R., Bernstam E.V., Wang H., Bucalo M., Chen Y. et al., 2020/11/01. Journal of the American Medical Informatics Association, 27 (11) pp. 1721-1726. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7D30526235EB]
 
Promotion de la vaccination antigrippale durant la visite médicale d'embauche
Currat Michael, Lazor-Blanchet Catherine, Zanetti Giorgio, 2020/10/01. dans Archives des maladies professionnelles et de l'environnement.
[serval:BIB_45BBE6F51E10]
GenoShare: Supporting Privacy-Informed Decisions for Sharing Individual-Level Genetic Data.
Raisaro J.L., Troncoso-Pastoriza J.R., El-Zein Y., Humbert M., Troncoso C., Fellay J., Hubaux J.P., 2020/06/16. Studies in health technology and informatics, 270 pp. 238-241. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4D4CB80455C]
 
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery.
Raisaro J.L., Troncoso-Pastoriza J.R., Pradervand S., Cuendet M., Misbach M., Sa J., Marino F., Freundler N., Rosat N., Cavin D. et al., 2020/06/16. Studies in health technology and informatics, 270 pp. 1161-1162. Peer-reviewed.
[DOI][Pmid][serval:BIB_3077196DA0EB]
 
MedCo2: Privacy-Preserving Cohort Exploration and Analysis.
Froelicher David, Mickaël Misbach, Troncoso-Pastoriza Juan Ramon, Raisaro Jean Louis, Hubaux Jean-Pierre, 2020/06/01. Studies in health technology and informatics.
[DOI][Pmid][serval:BIB_D0C4C9C55DD4]
Data protection and ethics requirements for multisite research with health data: a comparative examination of legislative governance frameworks and the role of data protection technologies.
Scheibner J., Ienca M., Kechagia S., Troncoso-Pastoriza J.R., Raisaro J.L., Hubaux J.P., Fellay J., Vayena E., 2020. Journal of law and the biosciences, 7 (1) pp. lsaa010. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E81CB33F863F]
2019
 
MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data
Raisaro Jean Louis, Troncoso-Pastoriza Juan Ramon, Misbach Mickael, Sousa Joao Sa, Pradervand Sylvain, Missiaglia Edoardo, Michielin Olivier, Ford Bryan, Hubaux Jean-Pierre, 2019/07/01. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16 (4) pp. 1328-1341. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EB26A9E809D5]
2018
 
Are privacy-enhancing technologies for genomic data ready for the clinic? A survey of medical experts of the Swiss HIV Cohort Study.
Raisaro J.L., McLaren P.J., Fellay J., Cavassini M., Klersy C., Hubaux J.P., Swiss HIV Cohort Study, 2018/03. Journal of biomedical informatics, 79 pp. 1-6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA11676A72A9]
Feasibility of Homomorphic Encryption for Sharing I2B2 Aggregate-Level Data in the Cloud.
Raisaro J.L., Klann J.G., Wagholikar K.B., Estiri H., Hubaux J.P., Murphy S.N., 2018. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2017 pp. 176-185. Peer-reviewed.
[URN][Pmid][serval:BIB_FDEFCDEC84BD]
 
Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy.
Raisaro J.L., Gwangbae Choi, Pradervand S., Colsenet R., Jacquemont N., Rosat N., Mooser V., Hubaux J.P., 2018. IEEE/ACM transactions on computational biology and bioinformatics, 15 (5) pp. 1413-1426. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_77895CA6B07B]
2017
 
UnLynx: A Decentralized System for Privacy-Conscious Data Sharing
Froelicher David, Egger Patricia, Sousa João Sá, Raisaro Jean Louis, Huang Zhicong, Mouchet Christian, Ford Bryan, Hubaux Jean-Pierre, 2017/10/01. Proceedings on Privacy Enhancing Technologies, 2017 (4) pp. 232-250. Peer-reviewed.
[DOI][serval:BIB_B0D7721A18A6]
Efficient and secure outsourcing of genomic data storage.
Sousa J.S., Lefebvre C., Huang Z., Raisaro J.L., Aguilar-Melchor C., Killijian M.O., Hubaux J.P., 2017/07/26. BMC medical genomics, 10 (Suppl 2) p. 46. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_33015E73AFE3]
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
Raisaro J.L., Tramèr F., Ji Z., Bu D., Zhao Y., Carey K., Lloyd D., Sofia H., Baker D., Flicek P. et al., 2017/07/01. Journal of the American Medical Informatics Association, 24 (4) pp. 799-805. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B1775430E24D]
2016
Privacy-preserving genomic testing in the clinic: a model using HIV treatment.
McLaren P.J., Raisaro J.L., Aouri M., Rotger M., Ayday E., Bartha I., Delgado M.B., Vallet Y., Günthard H.F., Cavassini M. et al., 2016/08. Genetics in medicine, 18 (8) pp. 814-822. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C52D051D158A]
2015
COMPASS identifies T-cell subsets correlated with clinical outcomes.
Lin L., Finak G., Ushey K., Seshadri C., Hawn T.R., Frahm N., Scriba T.J., Mahomed H., Hanekom W., Bart P.A. et al., 2015/06. Nature biotechnology, 33 (6) pp. 610-616. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8FADB11D7063]
 
Privacy Threats and Practical Solutions for Genetic Risk Tests
Barman Ludovic, Elgraini Mohammed-Taha, Raisaro Jean Louis, Hubaux Jean-Pierre, Ayday Erman, 2015/05. dans 2015 IEEE Security and Privacy Workshops. Peer-reviewed, IEEE.
[DOI][serval:BIB_8DDC312D0DF5]
2014
 
Patient privacy in the genomic era.
Raisaro J.L., Ayday E., Hubaux J.P., 2014/05/07. Praxis, 103 (10) pp. 579-586. Peer-reviewed.
[DOI][Pmid][serval:BIB_73FA5E278D80]
 
Privacy-Preserving Processing of Raw Genomic Data
Ayday Erman, Raisaro Jean Louis, Hengartner Urs, Molyneaux Adam, Hubaux Jean-Pierre, 2014. pp. 133-147 dans Data Privacy Management and Autonomous Spontaneous Security, Springer Berlin Heidelberg.
[DOI][serval:BIB_E50F64F54A6C]
2013
 
Personal use of the genomic data: Privacy vs. storage cost
Ayday Erman, Raisaro Jean Louis, Hubaux Jean-Pierre, 2013/12. dans 2013 IEEE Global Communications Conference (GLOBECOM). Peer-reviewed, IEEE.
[DOI][serval:BIB_FF4AEBDCF4F9]
 
Protecting and evaluating genomic privacy in medical tests and personalized medicine
Ayday Erman, Raisaro Jean Louis, Hubaux Jean-Pierre, Rougemont Jacques, 2013/11/04. dans Proceedings of the 12th ACM workshop on Workshop on privacy in the electronic society. Peer-reviewed, ACM.
[DOI][serval:BIB_D5DF60F60F90]
 
Privacy-Preserving Computation of Disease Risk by Using Genomic, Clinical, and Environmental Data
Ayday Erman, Raisaro Jean Louis, McLaren Paul J, Fellay Jacques, Hubaux Jean-Pierre, 2013. dans Proceedings of the 2013 USENIX Conference on Safety, Security, Privacy and Interoperability of Health Information Technologies. Peer-reviewed.
[serval:BIB_048635477FF8]
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