Direction innovation et recherche clinique

Equipe principale
Publications | Mémoires et thèses

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58 publications

Sous presse
 
Weight, anthropometric and metabolic changes after discontinuing antiretroviral therapy containing tenofovir alafenamide (TAF) in people with HIV.
Damas J., Munting A., Fellay J., Haerry D., Marzolini C., Tarr P.E., Steffen A., Braun D.L., Stoeckle M., Bernasconi E. et al. Clinical infectious diseases. Peer-reviewed.
[DOI][Pmid][serval:BIB_A22E1C92231B]
Early processed electroencephalography for the monitoring of deeply sedated mechanically ventilated critically ill patients.
Favre E., Bernini A., Miroz J.P., Abed-Maillard S., Ramelet A.S., Oddo M. Nursing in critical care. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B14DBF1A5133]
 
Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection.
Marchal A., Cirulli E.T., Neveux I., Bellos E., Thwaites R.S., Schiabor Barrett K.M., Zhang Y., Nemes-Bokun I., Kalinova M., Catchpole A. et al. HGG advances. Peer-reviewed.
[DOI][Pmid][serval:BIB_45B960D632E8]
 
Inborn errors of type I interferon immunity in patients with symptomatic acute hepatitis E.
Saadat A., Gouttenoire J., Ripellino P., Semela D., Amar S., Frey B.M., Fontana S., Mdawar-Bailly E., Moradpour D., Fellay J. et al. Hepatology. Peer-reviewed.
[DOI][Pmid][serval:BIB_212560170173]
 
Diagnostic accuracy of a sequence-specific Mtb-DNA hybridization assay in urine: a case-control study including subclinical TB cases.
Tschan Y., Sasamalo M., Hiza H., Fellay J., Gagneux S., Reither K., Hella J., Portevin D. Microbiology spectrum. Peer-reviewed.
[DOI][Pmid][serval:BIB_4CA88B9A5608]
 
Author Correction: Neoadjuvant atezolizumab plus chemotherapy in gastric and gastroesophageal junction adenocarcinoma: the phase 2 PANDA trial.
Verschoor Y.L., van de Haar J., van den Berg J.G., van Sandick J.W., Kodach L.L., van Dieren J.M., Balduzzi S., Grootscholten C., IJsselsteijn M.E., Veenhof AAFA et al. Nature medicine. Peer-reviewed.
[DOI][Pmid][serval:BIB_8A325C52A9E1]
 
Joint host-pathogen genomic analysis identifies hepatitis B virus mutations associated with human NTCP and HLA class I variation.
Xu Z.M., Gnouamozi G.E., Rüeger S., Shea P.R., Buti M., Chan H.L., Marcellin P., Lawless D., Naret O., Zeller M. et al. American journal of human genetics. Peer-reviewed.
[DOI][Pmid][serval:BIB_9CF13B4886CA]
2024
 
Ketone Bodies after Cardiac Arrest: A Narrative Review and the Rationale for Use.
Annoni F., Gouvea Bogossian E., Peluso L., Su F., Moreau A., Nobile L., Casu S.G., Sterchele E.D., Calabro L., Salvagno M. et al., 2024/05/04. Cells, 13 (9). Peer-reviewed.
[DOI][Pmid][serval:BIB_C7F3B02D46B1]
Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania.
Hiza H., Zwyer M., Hella J., Arbués A., Sasamalo M., Borrell S., Xu Z.M., Ross A., Brites D., Fellay J. et al., 2024/04/23. Scientific reports, 14 (1) p. 9287. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_288A15B47D51]
Vitamin supplements: Are they associated with immune status?
Grivat B., Marques-Vidal P., Kraege V., 2024/04. Clinical nutrition ESPEN, 60 pp. 102-108. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_07D3E26124BE]
Alzheimer's disease marker phospho-tau181 is not elevated in the first year after moderate-to-severe TBI.
Graham N., Zimmerman K., Heslegrave A.J., Keshavan A., Moro F., Abed-Maillard S., Bernini A., Dunet V., Garbero E., Nattino G. et al., 2024/03/13. Journal of neurology, neurosurgery, and psychiatry, 95 (4) pp. 356-359. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_296EBD031A7A]
 
The predictive value and clinical use of the neurological pupillary index - Authors' reply.
Galimberti S., Petrosino M., Rebora P., Oddo M., Taccone F.S., Citerio G., 2024/03. The Lancet. Neurology, 23 (3) pp. 229-230. Peer-reviewed.
[DOI][Pmid][serval:BIB_4C5254830791]
 
ChatGPT en pratique clinique : perspectives et limites [ChatGPT in clinical practice: prospects and challenges]
Roustan D., Galland-Decker C., Marinoni C., Bastardot F., 2024/02/14. Revue medicale suisse, 20 (861) pp. 363-366. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_589577A12550]
A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy.
Chong A.Y., Brenner N., Jimenez-Kaufmann A., Cortes A., Hill M., Littlejohns T.J., Gilchrist J.J., Fairfax B.P., Knight J.C., Hodel F. et al., 2024/02/01. American journal of human genetics, 111 (2) pp. 295-308. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_17B73429046E]
Critical Care Management of Patients After Cardiac Arrest: A Scientific Statement from the American Heart Association and Neurocritical Care Society.
Hirsch K.G., Abella B.S., Amorim E., Bader M.K., Barletta J.F., Berg K., Callaway C.W., Friberg H., Gilmore E.J., Greer D.M. et al., 2024/02. Neurocritical care, 40 (1) pp. 1-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71B25D5369B3]
Le médecin, quel pantin!
Vanessa Kraege, 2024/01/24. Bulletin des Médecins Suisses.
[URN][DOI][serval:BIB_4021397D17D0]
 
Correction: Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19.
Matuozzo D., Talouarn E., Marchal A., Zhang P., Manry J., Seeleuthner Y., Zhang Y., Bolze A., Chaldebas M., Milisavljevic B. et al., 2024/01/06. Genome medicine, 16 (1) p. 6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CA23CC25F766]
The predictive value of highly malignant EEG patterns after cardiac arrest: evaluation of the ERC-ESICM recommendations.
Turella S., Dankiewicz J., Friberg H., Jakobsen J.C., Leithner C., Levin H., Lilja G., Moseby-Knappe M., Nielsen N., Rossetti A.O. et al., 2024/01. Intensive care medicine, 50 (1) pp. 90-102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B43D2E92358C]
2023
Le courage du franc-parler
Kraege Vanessa, 2023/12/20. Bulletin des Médecins Suisses.
[URN][DOI][serval:BIB_4A4AA531C543]
Cannabis use and atherosclerotic cardiovascular disease: a Mendelian randomization study.
de La Harpe R., Schoeler T., Thorball C.W., Thomas A., Kutalik Z., Vaucher J., 2023/12/13. BMC cardiovascular disorders, 23 (1) p. 611. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2C9E1FFFC502]
 
Souffrons-nous toutes et tous d’un syndrome d’imposture? [Do we all suffer from imposter syndrome?]
Augros F., Kraege V., Méan M., Waeber G., Castioni J., 2023/11/22. Revue medicale suisse, 19 (851) pp. 2208-2211. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F9C134EC45FA]
 
Call for submissions: Special issue on short introductory notes on biostatistics
Gosselin Romain-Daniel, Reynolds Penelope S, 2023/10. Laboratory Animals, 57 (5) pp. 478-478. Peer-reviewed.
[DOI][WoS][serval:BIB_918C7742FDD7]
G2GSnake: a Snakemake workflow for host-pathogen genomic association studies.
Xu Z.M., Naret O., Oumelloul M.A., Fellay J., 2023/10. Bioinformatics advances, 3 (1) pp. vbad142. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_5457A30782C8]
 
Autoantibodies neutralizing type I IFNs underlie West Nile virus encephalitis in ∼40% of patients.
Gervais A., Rovida F., Avanzini M.A., Croce S., Marchal A., Lin S.C., Ferrari A., Thorball C.W., Constant O., Le Voyer T. et al., 2023/09/04. The Journal of experimental medicine, 220 (9) pp. e20230661. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_36E7457158FD]
 
Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load.
McLaren P.J., Porreca I., Iaconis G., Mok H.P., Mukhopadhyay S., Karakoc E., Cristinelli S., Pomilla C., Bartha I., Thorball C.W. et al., 2023/09. Nature, 621 (7979) pp. E42. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5534E0BE7C51]
Human Genomics of COVID-19 Pneumonia: Contributions of Rare and Common Variants.
Cobat A., Zhang Q., COVID Human Genetic Effort, Abel L., Casanova J.L., Fellay J., 2023/08/10. Annual review of biomedical data science, 6 pp. 465-486. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FAD92BD97EE4]
 
Africa-specific human genetic variation near CHD1L associates with HIV-1 load.
McLaren P.J., Porreca I., Iaconis G., Mok H.P., Mukhopadhyay S., Karakoc E., Cristinelli S., Pomilla C., Bartha I., Thorball C.W. et al., 2023/08. Nature, 620 (7976) pp. 1025-1030. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B1BEC83916D3]
 
Genetic features and genomic targets of human KRAB-zinc finger proteins.
de Tribolet-Hardy J., Thorball C.W., Forey R., Planet E., Duc J., Coudray A., Khubieh B., Offner S., Pulver C., Fellay J. et al., 2023/08. Genome research, 33 (8) pp. 1409-1423. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_41F4935182BD]
 
Prognostication and Goals of Care Decisions in Severe Traumatic Brain Injury: A Survey of The Seattle International Severe Traumatic Brain Injury Consensus Conference Working Group.
Sarigul B., Bell R.S., Chesnut R., Aguilera S., Buki A., Citerio G., Cooper D.J., Diaz-Arrastia R., Diringer M., Figaji A. et al., 2023/08. Journal of neurotrauma, 40 (15-16) pp. 1707-1717. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3B700CF34E6E]
 
A metagenome-wide association study of HIV disease progression in HIV controllers.
Real L.M., Sáez M.E., Corma-Gómez A., Gonzalez-Pérez A., Thorball C., Ruiz R., Jimenez-Leon M.R., Gonzalez-Serna A., Gasca-Capote C., Bravo M.J. et al., 2023/07/21. iScience, 26 (7) p. 107214. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6F6159861097]
 
Multiancestry sex-stratified genomic associations with HIV viral load and controller status from the ICGH.
Vergara C., Tuff J.F., International Collaboration for the Genomics of HIV (ICGH), Fellay J., Duggal P., Scully E.P., McLaren P.J., 2023/06/08. JCI insight, 8 (11). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_18D55776D514]
 
Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort.
Lawless D., McKennan C.G., Das S.R., Junier T., Xu Z.M., Anderson L.J., Gebretsadik T., Shilts M.H., Larkin E., Rosas-Salazar C. et al., 2023/05/12. The Journal of infectious diseases, 227 (10) pp. 1194-1202. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C12920D2B3E]
 
Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19.
Matuozzo D., Talouarn E., Marchal A., Zhang P., Manry J., Seeleuthner Y., Zhang Y., Bolze A., Chaldebas M., Milisavljevic B. et al., 2023/04/05. Genome medicine, 15 (1) p. 22. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_31798B2B6490]
Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania.
Zwyer M., Rutaihwa L.K., Windels E., Hella J., Menardo F., Sasamalo M., Sommer G., Schmülling L., Borrell S., Reinhard M. et al., 2023/04. PLoS pathogens, 19 (4) pp. e1010893. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6BF85513B900]
 
Cerebral Metabolic Dysfunction at the Acute Phase of Traumatic Brain Injury Correlates with Long-Term Tissue Loss.
Bernini A., Magnoni S., Miroz J.P., Corredor-Jerez R., Bertolini G., Zetterberg H., Graham N., Sharp D., Oddo M., Dunet V., 2023/03. Journal of neurotrauma, 40 (5-6) pp. 472-481. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_708BFD3A38AA]
 
Polygenic Risk Scores for Prediction of Subclinical Coronary Artery Disease in Persons With Human Immunodeficiency Virus (HIV): The Swiss HIV Cohort Study.
Schoepf I.C., Thorball C.W., Kovari H., Ledergerber B., Buechel R.R., Calmy A., Weber R., Kaufmann P.A., Nkoulou R., Schwenke J.M. et al., 2023/01/06. Clinical infectious diseases, 76 (1) pp. 48-56. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F8C439A0D50D]
 
Predicting type 2 diabetes risk before and after solid organ transplantation using polygenic scores in a Danish cohort.
Dos Santos Q., Leung P., Thorball C.W., Ledergerber B., Fellay J., MacPherson C.R., Hornum M., Terrones-Campos C., Rasmussen A., Gustafsson F. et al., 2023. Frontiers in molecular biosciences, 10 p. 1282412. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_19C243A8DA7F]
2022
 
Hypothermic versus Normothermic Temperature Control after Cardiac Arrest.
Holgersson J., Meyer MAS, Dankiewicz J., Lilja G., Ullén S., Hassager C., Cronberg T., Wise M.P., Bělohlávek J., Hovdenes J. et al., 2022/11. NEJM evidence, 1 (11) pp. EVIDoa2200137. Peer-reviewed.
[DOI][Pmid][serval:BIB_E27E0B56D5D9]
 
Treatment reality of patients with BRAF-mutant advanced/metastatic melanoma in Switzerland in the era of choice.
Mangana J., Zihler D., Bossart S., Brönnimann D., Zachariah R., Gérard C.L., 2022/10/01. Melanoma research, 32 (5) pp. 366-372. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A4E833D2057F]
 
Transcriptional and functional analyses of neoantigen-specific CD4 T cells during a profound response to anti-PD-L1 in metastatic Merkel cell carcinoma.
Church C., Pulliam T., Longino N., Park S.Y., Smythe K.S., Makarov V., Riaz N., Jing L., Amezquita R., Campbell J.S. et al., 2022/09. Journal for immunotherapy of cancer, 10 (9) pp. e005328. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_750977A30F9F]
A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits.
Nadeau S., Thorball C.W., Kouyos R., Günthard H.F., Böni J., Yerly S., Perreau M., Klimkait T., Rauch A., Hirsch H.H. et al., 2022/08/03. Molecular biology and evolution, 39 (8) pp. msac163. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0A2EB45D9AE]
 
A Baseline Cellular Antiviral State Is Maintained by cGAS and Its Most Frequent Naturally Occurring Variant rs610913.
Kazmierski J., Elsner C., Döhner K., Xu S., Ducroux A., Pott F., Jansen J., Thorball C.W., Zeymer O., Zhou X. et al., 2022/08/01. Journal of immunology, 209 (3) pp. 535-547. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_99B41F98BEAA]
 
Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV.
Bick A.G., Popadin K., Thorball C.W., Uddin M.M., Zanni M.V., Yu B., Cavassini M., Rauch A., Tarr P., Schmid P. et al., 2022/07/08. Scientific reports, 12 (1) p. 11638. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3C87FA69CB82]
Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.
Joanito I., Wirapati P., Zhao N., Nawaz Z., Yeo G., Lee F., Eng CLP, Macalinao D.C., Kahraman M., Srinivasan H. et al., 2022/07. Nature genetics, 54 (7) pp. 963-975. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_27A9BBA898C9]
Monocyte Transcriptional Responses to Mycobacterium tuberculosis Associate with Resistance to Tuberculin Skin Test and Interferon Gamma Release Assay Conversion.
Simmons J.D., Dill-McFarland K.A., Stein C.M., Van P.T., Chihota V., Ntshiqa T., Maenetje P., Peterson G.J., Benchek P., Nsereko M. et al., 2022/06/29. mSphere, 7 (3) pp. e0015922. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2FD7AA544175]
Neurological Pupil Index for the Early Prediction of Outcome in Severe Acute Brain Injury Patients.
Romagnosi F., Bernini A., Bongiovanni F., Iaquaniello C., Miroz J.P., Citerio G., Taccone F.S., Oddo M., 2022/05/06. Brain sciences, 12 (5) p. 609. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4475DD601004]
 
Early neurological pupil index to predict outcome after cardiac arrest.
Peluso L., Oddo M., Sandroni C., Citerio G., Taccone F.S., 2022/04. Intensive care medicine, 48 (4) pp. 496-497. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_44934E64CC7D]
 
ACKR3 promotes CXCL12/CXCR4-mediated cell-to-cell-induced lymphoma migration through LTB4 production.
Antonello P., Pizzagalli D.U., Foglierini M., Melgrati S., Radice E., Thelen S., Thelen M., 2022. Frontiers in immunology, 13 p. 1067885. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3D390AEFD3E0]
 
CD38 Expression by Antigen-Specific CD4 T Cells Is Significantly Restored 5 Months After Treatment Initiation Independently of Sputum Bacterial Load at the Time of Tuberculosis Diagnosis.
Hiza H., Hella J., Arbués A., Sasamalo M., Misana V., Fellay J., Gagneux S., Reither K., Portevin D., 2022. Frontiers in medicine, 9 p. 821776. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BDB41F7DEE7D]
 
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.
Zhao L., Wymant C., Blanquart F., Golubchik T., Gall A., Bakker M., Bezemer D., Hall M., Ong S.H., Albert J. et al., 2022. Virus evolution, 8 (1) pp. veac022. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DED149CC980B]
2021
 
Author Correction: A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response.
Luo Y., Kanai M., Choi W., Li X., Sakaue S., Yamamoto K., Ogawa K., Gutierrez-Arcelus M., Gregersen P.K., Stuart P.E. et al., 2021/12. Nature genetics, 53 (12) p. 1722. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_49102EA5EBAA]
 
Axonal marker neurofilament light predicts long-term outcomes and progressive neurodegeneration after traumatic brain injury.
Graham NSN, Zimmerman K.A., Moro F., Heslegrave A., Maillard S.A., Bernini A., Miroz J.P., Donat C.K., Lopez M.Y., Bourke N. et al., 2021/09/29. Science translational medicine, 13 (613) pp. eabg9922. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_53A91CFFBB61]
 
FV 1. Can EEG predict present cortical somato-sensory evoked potentials after cardiac arrest?
Beuchat I., Novy J., Barbella G., Oddo M., Rossetti A., 2021/08. Clinical Neurophysiology, 132 (8) pp. e29.
[DOI][serval:BIB_390049A52E9B]
 
A National, Semantic-Driven, Three-Pillar Strategy to Enable Health Data Secondary Usage Interoperability for Research Within the Swiss Personalized Health Network: Methodological Study.
Gaudet-Blavignac C., Raisaro J.L., Touré V., Österle S., Crameri K., Lovis C., 2021/06/24. JMIR medical informatics, 9 (6) pp. e27591. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_85D2A336EDD4]
 
Citizen-centered, auditable and privacy-preserving population genomics.
Grishin D., Raisaro J.L., Troncoso-Pastoriza J.R., Obbad K., Quinn K., Misbach M., Gollhardt J., Sa J., Fellay J., Church G.M. et al., 2021/03. Nature computational science, 1 (3) pp. 192-198. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C0580E5093AA]
 
Revolutionizing Medical Data Sharing Using Advanced Privacy-Enhancing Technologies: Technical, Legal, and Ethical Synthesis.
Scheibner J., Raisaro J.L., Troncoso-Pastoriza J.R., Ienca M., Fellay J., Vayena E., Hubaux J.P., 2021/02/25. Journal of medical Internet research, 23 (2) pp. e25120. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E2683B6181C3]
 
Insufficient transparency of statistical reporting in preclinical research: a scoping review.
Gosselin R.D., 2021/02/08. Scientific reports, 11 (1) p. 3335. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3AC1F73824B4]
2020
 
Statistical Analysis Must Improve to Address the Reproducibility Crisis: The ACcess to Transparent Statistics (ACTS) Call to Action.
Gosselin R.D., 2020/01. BioEssays, 42 (1) pp. e1900189. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_570EB8E2C519]
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