Department of Fundamental Microbiology

Publications | Phd and Masters theses

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1161 publications

En préparation
 
Stress-mediated growth determines<i>E. coli</i>division site morphogenesis
Pelech Petr, Navarro Paula P., Vettiger Andrea, Chao Luke H., Allolio Christoph.
[DOI][Pmid][serval:BIB_1DA2C597ED45]
 
Chromosome organization shapes replisome dynamics in<i>Caulobacter crescentus</i>
Zhang Chen, Joseph Asha Mary, Casini Laurent, Collier Justine, Badrinarayanan Anjana, Manley Suliana.
[DOI][serval:BIB_95BB8A544E4B]
In press
 
PneumoBrowse 2: an integrated visual platform for curated genome annotation and multiomics data analysis of Streptococcus pneumoniae.
Janssen A.B., Gibson P.S., Bravo A.M., de Bakker V., Slager J., Veening J.W. Nucleic acids research. Peer-reviewed.
[DOI][Pmid][serval:BIB_8FB8F0A27BF6]
 
DNA supercoiling enhances DNA condensation by ParB proteins.
Martin-Gonzalez A., Tišma M., Analikwu B.T., Barth A., Janissen R., Antar H., Kemps G., Gruber S., Dekker C. Nucleic acids research. Peer-reviewed.
[DOI][Pmid][serval:BIB_9F0306AB2E80]
 
Dynamic 3D genome reorganization during senescence: defining cell states through chromatin.
Shaban H.A., Gasser S.M. Cell death and differentiation. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_50916437809C]
 
Cryo-electron microscopy in color.
Stahlberg H. Nature methods. Peer-reviewed.
[DOI][Pmid][serval:BIB_B921E2C5DF62]
 
Vaginal microbiota stability over 18 months in young student women in France.
Tamarelle J., Thiébaut ACM, de Barbeyrac B., Bébéar C., Bourret A., Fauconnier A., Ravel J., Delarocque-Astagneau E., i-Predict study group European journal of clinical microbiology & infectious diseases. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8544F7A9180E]
2024
 
Triggering Toll-Like Receptor 5 Signaling During Pneumococcal Superinfection Prevents the Selection of Antibiotic Resistance.
Costa C., Sirard J.C., Gibson P.S., Veening J.W., Gjini E., Baldry M., 2024/11/15. The Journal of infectious diseases, 230 (5) pp. e1126-e1135. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DBC6497572C4]
 
Uncovering the arsenal of class II bacteriocins in salivarius streptococci.
Damoczi J., Knoops A., Martou M.S., Jaumaux F., Gabant P., Mahillon J., Veening J.W., Mignolet J., Hols P., 2024/11/14. Communications biology, 7 (1) p. 1511. Peer-reviewed.
[DOI][Pmid][serval:BIB_403C07B3C6ED]
 
Distinct ultrastructural phenotypes of glial and neuronal alpha-synuclein inclusions in multiple system atrophy.
Böing C., Di Fabrizio M., Burger D., Bol JGJM, Huisman E., Rozemuller AJM, van de Berg WDJ, Stahlberg H., Lewis A.J., 2024/11/04. Brain, 147 (11) pp. 3727-3741. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA76F479BD51]
Mouse α-synuclein fibrils are structurally and functionally distinct from human fibrils associated with Lewy body diseases.
Sokratian A., Zhou Y., Tatli M., Burbidge K.J., Xu E., Viverette E., Donzelli S., Duda A.M., Yuan Y., Li H. et al., 2024/11. Science advances, 10 (44) pp. eadq3539. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_20718CBE7864]
Probing the functional significance of wild animal microbiomes using omics data
Worsley Sarah F., Videvall Elin, Harrison Xavier A., Björk Johannes R., Mazel Florent, Wanelik Klara M., 2024/11. Functional Ecology, 38 (11) pp. 2329-2349.
[URN][DOI][WoS][serval:BIB_DA1D49D38C23]
Landscape and environmental heterogeneity support coexistence in competitive metacommunities.
Padmanabha P., Nicoletti G., Bernardi D., Suweis S., Azaele S., Rinaldo A., Maritan A., 2024/10/29. Proceedings of the National Academy of Sciences of the United States of America, 121 (44) pp. e2410932121. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_31143BEE8442]
 
DNA methylation by CcrM contributes to genome maintenance in the Agrobacterium tumefaciens plant pathogen.
Martin S., Fournes F., Ambrosini G., Iseli C., Bojkowska K., Marquis J., Guex N., Collier J., 2024/10/28. Nucleic acids research, 52 (19) pp. 11519-11535. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C3DF5C03B52]
 
When less is more: sketching with minimizers in genomics.
Ndiaye M., Prieto-Baños S., Fitzgerald L.M., Yazdizadeh Kharrazi A., Oreshkov S., Dessimoz C., Sedlazeck F.J., Glover N., Majidian S., 2024/10/14. Genome biology, 25 (1) p. 270. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E86014EEAF89]
 
Genomic and phenotypic imprints of microbial domestication on cheese starter cultures.
Somerville V., Thierer N., Schmidt R.S., Roetschi A., Braillard L., Haueter M., Berthoud H., Shani N., von Ah U., Mazel F. et al., 2024/10/05. Nature communications, 15 (1) p. 8642. Peer-reviewed.
[DOI][Pmid][serval:BIB_845A090A7F21]
 
Inferring Bacterial Interspecific Interactions from Microcolony Growth Expansion
Trabajo Tania Miguel, Guex Isaline, Dubey Manupriyam, Sarton-Lohéac Elvire, Todorov Helena, Richard Xavier, Mazza Christian, van der Meer Jan Roelof, 2024/10/04. microLife. Peer-reviewed.
[DOI][serval:BIB_B74321096DEE]
Automated fiducial-based alignment of cryo-electron tomography tilt series in Dynamo.
Coray R., Navarro P., Scaramuzza S., Stahlberg H., Castaño-Díez D., 2024/10/03. Structure, 32 (10) pp. 1808-1819.e4. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6DCB4378329B]
Host diet drives gut microbiome convergence between coral reef fishes and mammals.
Degregori S., Schiettekatte NMD, Casey J.M., Brandl S.J., Mercière A., Amato K.R., Mazel F., Parravicini V., Barber P.H., 2024/10. Molecular ecology, 33 (19) pp. e17520. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_89DAAA0993D6]
Interplay between gut symbionts and behavioral variation in social insects.
Liberti J., Engel P., Cabirol A., 2024/10. Current opinion in insect science, 65 p. 101233. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6A0FAFA69050]
Small intestinal microbiota: from taxonomic composition to metabolism.
Yersin S., Vonaesch P., 2024/10. Trends in microbiology, 32 (10) pp. 970-983. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_1EAF55E4ABF5]
 
Metagenomic analyses of a consortium for the bioremediation of hydrocarbons polluted soils.
Pandolfo E., Durán-Wendt D., Martínez-Cuesta R., Montoya M., Carrera-Ruiz L., Vazquez-Arias D., Blanco-Romero E., Garrido-Sanz D., Redondo-Nieto M., Martin M. et al., 2024/09/28. AMB Express, 14 (1) p. 105. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_619ECA263483]
 
Cdc42 mobility and membrane flows regulate fission yeast cell shape and survival.
Rutkowski D.M., Vincenzetti V., Vavylonis D., Martin S.G., 2024/09/27. Nature communications, 15 (1) p. 8363. Peer-reviewed.
[DOI][Pmid][serval:BIB_19036AE3B7D9]
Fecal transplant allows transmission of the gut microbiota in honey bees.
Cabirol A., Chhun A., Liberti J., Kesner L., Neuschwander N., Schaerli Y., Engel P., 2024/09/25. mSphere, 9 (9) pp. e0026224. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EF2AA95DF8B4]
 
Editorial: Static and dynamic pattern formation from nano to macroscales
Itatani Masaki, Holló Gábor, Kumar Pawan, Matsuo Muneyuki, Nabika Hideki, Lagzi István, 2024/09/18. Frontiers in Physics, 12.
[DOI][WoS][serval:BIB_B3790395F736]
 
Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution.
Küçükoğlu B., Mohammed I., Guerrero-Ferreira R.C., Ribet S.M., Varnavides G., Leidl M.L., Lau K., Nazarov S., Myasnikov A., Kube M. et al., 2024/09/14. Nature communications, 15 (1) p. 8062. Peer-reviewed.
[DOI][Pmid][serval:BIB_4F8B0072ADF0]
 
Gut microbiota influences onset of foraging-related behavior but not physiological hallmarks of division of labor in honeybees.
Liberti J., Frank E.T., Kay T., Kesner L., Monié-Ibanes M., Quinn A., Schmitt T., Keller L., Engel P., 2024/09/11. mBio, 15 (9) pp. e0103424. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_12C359371AC6]
 
Artificial selection improves pollutant degradation by bacterial communities.
Arias-Sánchez F.I., Vessman B., Haym A., Alberti G., Mitri S., 2024/09/07. Nature communications, 15 (1) p. 7836. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CDC71B10EDEF]
Transport of topological defects in a biphasic mixture of active and passive nematic fluids
Chaithanya K. V. S., Ardaševa Aleksandra, Meacock Oliver J., Durham William M., Thampi Sumesh P., Doostmohammadi Amin, 2024/09/06. Communications Physics, 7 (1).
[URN][DOI][WoS][serval:BIB_6CD00837850A]
 
Comparisons of two receptor-MAPK pathways in a single cell-type reveal mechanisms of signalling specificity.
Ma Y., Flückiger I., Nicolet J., Pang J., Dickinson J.B., De Bellis D., Emonet A., Fujita S., Geldner N., 2024/09. Nature plants, 10 (9) pp. 1343-1362. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2F0BE9BFF82F]
 
CRISPRi-TnSeq maps genome-wide interactions between essential and non-essential genes in bacteria.
Jana B., Liu X., Dénéréaz J., Park H., Leshchiner D., Liu B., Gallay C., Zhu J., Veening J.W., van Opijnen T., 2024/09. Nature microbiology, 9 (9) pp. 2395-2409. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A51A94333B3E]
Neuroactive metabolites modulated by the gut microbiota in honey bees.
Cabirol A., Moriano-Gutierrez S., Engel P., 2024/09. Molecular microbiology, 122 (3) pp. 284-293. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3ADF7D01186D]
 
Fragmented micro-growth habitats present opportunities for alternative competitive outcomes.
Batsch M., Guex I., Todorov H., Heiman C.M., Vacheron J., Vorholt J.A., Keel C., van der Meer J.R., 2024/08/31. Nature communications, 15 (1) p. 7591. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AEEA6BC007E1]
 
Bacttle: a microbiology educational board game for lay public and schools.
Miguel Trabajo Tania, Dorcey E., van der Meer J.R., 2024/08/29. Journal of microbiology & biology education, 25 (2) pp. e0009724. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_15FC0D45F9F0]
From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator.
Park J.H., Holló G., Schaerli Y., 2024/08/23. Nature communications, 15 (1) p. 7284. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_31414E598D6E]
Inverse Applications of the Generalized Littlewood Theorem Concerning Integrals of the Logarithm of Analytic Functions
Sekatskii Sergey K., 2024/08/23. Symmetry, 16 (9) p. 1100.
[URN][DOI][WoS][serval:BIB_35DF7EDAD821]
 
An efficient in vivo-inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies.
Bjånes E., Stream A., Janssen A.B., Gibson P.S., Bravo A.M., Dahesh S., Baker J.L., Varble A., Nizet V., Veening J-W, 2024/08/14. mBio, 15 (8) pp. e0084024. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_181A2B7D79BE]
 
Hierarchical Protofilament Intertwining Rules the Formation of Mixed-Curvature Amyloid Polymorphs.
Zhou J., Assenza S., Tatli M., Tian J., Ilie I.M., Starostin E.L., Caflisch A., Knowles TPJ, Dietler G., Ruggeri F.S. et al., 2024/08. Advanced science, 11 (32) pp. e2402740. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5D98F1B5070B]
Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation.
Kothe C.I., Carøe C., Mazel F., Zilber D., Cruz-Morales P., Mohellibi N., Evans J.D., 2024/08. Food research international, 189 p. 114490. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0A1C5AAF3DB0]
Genome-wide CRISPRi screens for high-throughput fitness quantification and identification of determinants for dalbavancin susceptibility in Staphylococcus aureus.
Liu X., de Bakker V., Heggenhougen M.V., Mårli M.T., Frøynes A.H., Salehian Z., Porcellato D., Morales Angeles D., Veening J-W, Kjos M., 2024/07/23. mSystems, 9 (7) pp. e0128923. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_992AD6896096]
Wound-dependent leg amputations to combat infections in an ant society.
Frank E.T., Buffat D., Liberti J., Aibekova L., Economo E.P., Keller L., 2024/07/22. Current biology, 34 (14) pp. 3273-3278.e3. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1F6CC9879224]
 
The evolution of reduced facilitation in a four-species bacterial community
Piccardi Philippe, Ulrich Eric, Garcia-Garcerà Marc, Martino Rita Di, Testa Samuele E A, Mitri Sara, 2024/07/19. Evolution Letters.
[DOI][WoS][serval:BIB_C0328ED5D1E4]
Natural plant disease suppressiveness in soils extends to insect pest control.
Harmsen N., Vesga P., Glauser G., Klötzli F., Heiman C.M., Altenried A., Vacheron J., Muller D., Moënne-Loccoz Y., Steinger T. et al., 2024/07/16. Microbiome, 12 (1) p. 127. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F7F937F6EE53]
 
Substrate complexity buffers negative interactions in a synthetic community of leaf litter degraders.
Abdoli P., Vulin C., Lepiz M., Chase A.B., Weihe C., Rodríguez-Verdugo A., 2024/07/12. FEMS microbiology ecology, 100 (8). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_56873C7A59CB]
The function of CozE proteins is linked to lipoteichoic acid biosynthesis in Staphylococcus aureus.
Barbuti M.D., Lambert E., Myrbråten I.S., Ducret A., Stamsås G.A., Wilhelm L., Liu X., Salehian Z., Veening J-W, Straume D. et al., 2024/06/12. mBio, 15 (6) pp. e0115724. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_37194217F7F5]
 
Metabolic outcomes in obese mice undergoing one-anastomosis gastric bypass (OAGB) with a long or a short biliopancreatic limb.
Lazaridis I.I., Bosch AJT, Keller L., Low AJY, Tamarelle J., Moser S.O., Winter D.V., Gómez C., Peterson C.J., Schneider R. et al., 2024/06/01. American journal of physiology. Endocrinology and metabolism, 326 (6) pp. E819-E831. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CC38E2EC8DFD]
Novel phages of Pseudomonas syringae unveil numerous potential auxiliary metabolic genes.
Feltin C., Garneau J.R., Morris C.E., Bérard A., Torres-Barceló C., 2024/06. The Journal of general virology, 105 (6). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C13A181399B0]
AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome.
Lux J., Sánchez García L., Chaparro Fernández P., Laloli L., Licheri M.F., Gallay C., Hermans PWM, Croucher N.J., Veening J.W., Dijkman R. et al., 2024/05/30. Scientific reports, 14 (1) p. 12416. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D94E11A04C85]
Author Correction: Fully co-factor-free ClearTau platform produces seeding-competent Tau fibrils for reconstructing pathological Tau aggregates.
Limorenko G., Tatli M., Kolla R., Nazarov S., Weil M.T., Schöndorf D.C., Geist D., Reinhardt P., Ehrnhoefer D.E., Stahlberg H. et al., 2024/05/30. Nature communications, 15 (1) p. 4595. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_11A21DB657F7]
Social Transfers for Exclusive Breastfeeding (STEB) Intervention in Lao People's Democratic Republic: Protocol for a Randomized Controlled Trial.
Sonephet S., Kounnavong S., Zinsstag L., Vonaesch P., Sayasone S., Siengsounthone L., Odermatt P., Fink G., Wallenborn J.T., 2024/05/03. JMIR research protocols, 13 pp. e54768. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_85CBE3E4C7D1]
Chromosome organization shapes replisome dynamics in Caulobacter crescentus.
Zhang C., Joseph A.M., Casini L., Collier J., Badrinarayanan A., Manley S., 2024/04/24. Nature communications, 15 (1) p. 3460. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0328D0EC537F]
Author Correction: Direct observation of a crescent-shape chromosome in expanded Bacillus subtilis cells.
Tišma M., Bock F.P., Kerssemakers J., Antar H., Japaridze A., Gruber S., Dekker C., 2024/04/16. Nature communications, 15 (1) p. 3262. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_6A104A5997DB]
External Validation of the 2023 Duke-International Society for Cardiovascular Infectious Diseases Diagnostic Criteria for Infective Endocarditis.
van der Vaart T.W., Bossuyt PMM, Durack D.T., Baddour L.M., Bayer A.S., Durante-Mangoni E., Holland T.L., Karchmer A.W., Miro J.M., Moreillon P. et al., 2024/04/10. Clinical infectious diseases, 78 (4) pp. 922-929. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F262B68ACA04]
Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization.
Lux J., Portmann H., Sánchez García L., Erhardt M., Holivololona L., Laloli L., Licheri M.F., Gallay C., Hoepner R., Croucher N.J. et al., 2024/04/08. Communications biology, 7 (1) p. 425. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0D45EBD017A6]
Homogeneous vs. heterogeneous photo-Fenton elimination of antibiotic-resistant bacteria bearing intracellular or extracellular resistance: Do resistance mechanisms interfere with disinfection pathways?
Decker Jeremie, Le Truong-Thien Melvin, Entenza Jose Manuel, del Castillo Gonzalez Isabel, Hernandez Lehmann Aurelio, Pulgarin Cesar, Rodriguez-Chueca Jorge, Giannakis Stefanos, 2024/04. Journal of Environmental Chemical Engineering, 12 (2) p. 112147.
[URN][DOI][WoS][serval:BIB_DDFEBD3B0CFC]
Implication of polymerase recycling for nascent transcript quantification by live cell imaging.
Kindongo O., Lieb G., Skaggs B., Dusserre Y., Vincenzetti V., Pelet S., 2024/04. Yeast, 41 (4) pp. 279-294. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4DBF20DED918]
Direct observation of a crescent-shape chromosome in expanded Bacillus subtilis cells.
Tišma M., Bock F.P., Kerssemakers J., Antar H., Japaridze A., Gruber S., Dekker C., 2024/03/28. Nature communications, 15 (1) p. 2737. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4DFF04DA4876]
Knowledge, Attitudes, and Practices of Rural Communities Regarding Antimicrobial Resistance and Climate Change in Adadle District, Somali Region, Ethiopia: A Mixed-Methods Study.
Muhummed A.M., Alemu A., Maidane Y.O., Tschopp R., Hattendorf J., Vonaesch P., Zinsstag J., Cissé G., 2024/03/22. Antibiotics, 13 (4). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E7A8B75621B3]
Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions.
Čaušević S., Dubey M., Morales M., Salazar G., Sentchilo V., Carraro N., Ruscheweyh H.J., Sunagawa S., van der Meer J.R., 2024/03/22. Nature communications, 15 (1) p. 2557. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E3381CFCB35A]
 
A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.
Liu X., Van Maele L., Matarazzo L., Soulard D., Alves Duarte da Silva V., de Bakker V., Dénéréaz J., Bock F.P., Taschner M., Ou J. et al., 2024/03/13. Cell host & microbe, 32 (3) pp. 304-314.e8. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8FC71E910A82]
An Optical Fiber-Based Nanomotion Sensor for Rapid Antibiotic and Antifungal Susceptibility Tests.
Zhou J., Liao C., Zou M., Villalba M.I., Xiong C., Zhao C., Venturelli L., Liu D., Kohler A.C., Sekatskii S.K. et al., 2024/03/13. Nano letters, 24 (10) pp. 2980-2988. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3C1B1FB78F1A]
On the Sums over Inverse Powers of Zeros of the Hurwitz Zeta Function and Some Related Properties of These Zeros
Sekatskii Sergey, 2024/03/07. Symmetry, 16 (3) p. 326.
[URN][DOI][WoS][serval:BIB_86AEEEE007A7]
 
Structural basis for plasmid restriction by SMC JET nuclease.
Roisné-Hamelin F., Liu H.W., Taschner M., Li Y., Gruber S., 2024/03/07. Molecular cell, 84 (5) pp. 883-896.e7. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_39FEBB8303EA]
An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment.
Chhun A., Moriano-Gutierrez S., Zoppi F., Cabirol A., Engel P., Schaerli Y., 2024/03. PLoS biology, 22 (3) pp. e3002523. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_88028872E2EA]
Ectopic colonization by oral bacteria as an emerging theme in health and disease.
Hernández-Cabanyero C., Vonaesch P., 2024/03/01. FEMS microbiology reviews, 48 (2). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2315638B3A57]
Experimentally evolved Staphylococcus aureus shows increased survival in the presence of Pseudomonas aeruginosa by acquiring mutations in the amino acid transporter, GltT.
Alexander A.M., Luu J.M., Raghuram V., Bottacin G., van Vliet S., Read T.D., Goldberg J.B., 2024/03. Microbiology, 170 (3). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C7AC31BE2A2B]
Adapting to ever-changing conditions.
Pelet S., 2024/02/28. eLife, 13 pp. e91717. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6F0E40AACD4]
Structure-function analysis of the cyclic β-1,2-glucan synthase from Agrobacterium tumefaciens.
Sedzicki J., Ni D., Lehmann F., Stahlberg H., Dehio C., 2024/02/28. Nature communications, 15 (1) p. 1844. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F0058130AFCA]
 
Computational drug development for membrane protein targets.
Li H., Sun X., Cui W., Xu M., Dong J., Ekundayo B.E., Ni D., Rao Z., Guo L., Stahlberg H. et al., 2024/02. Nature biotechnology, 42 (2) pp. 229-242. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A68B1F9B83F0]
Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi.
Quinn A., El Chazli Y., Escrig S., Daraspe J., Neuschwander N., McNally A., Genoud C., Meibom A., Engel P., 2024/02. Nature microbiology, 9 (2) pp. 477-489. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5EE5F5ED8979]
 
Integrative Conjugative Elements (ICEs) of the SXT/R391 family drive adaptation and evolution in γ-Proteobacteria.
Ryan M.P., Carraro N., Slattery S., Pembroke J.T., 2024/02. Critical reviews in microbiology, 50 (1) pp. 105-126. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D9EE1068E85D]
Oxidative stress changes interactions between 2 bacterial species from competitive to facilitative.
Di Martino R., Picot A., Mitri S., 2024/02. PLoS biology, 22 (2) pp. e3002482. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D03B97DAF06F]
Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction.
Tripathi S., Voogdt CGP, Bassler S.O., Anderson M., Huang P.H., Sakenova N., Capraz T., Jain S., Koumoutsi A., Bravo A.M. et al., 2024/01/23. Cell reports, 43 (1) p. 113517. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_455F9928A2F5]
Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics.
Voogdt CGP, Tripathi S., Bassler S.O., McKeithen-Mead S.A., Guiberson E.R., Koumoutsi A., Bravo A.M., Buie C., Zimmermann M., Sonnenburg J.L. et al., 2024/01/23. Cell reports, 43 (1) p. 113519. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9F11DD25FCA4]
The Response of the Honey Bee Gut Microbiota to Nosema ceranae Is Modulated by the Probiotic Pediococcus acidilactici and the Neonicotinoid Thiamethoxam.
Sbaghdi T., Garneau J.R., Yersin S., Chaucheyras-Durand F., Bocquet M., Moné A., El Alaoui H., Bulet P., Blot N., Delbac F., 2024/01/18. Microorganisms, 12 (1) p. 192. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_52C818E0EB3C]
Connecting the dots: key insights on ParB for chromosome segregation from single-molecule studies.
Tišma M., Kaljević J., Gruber S., Le TBK, Dekker C., 2024/01/12. FEMS microbiology reviews, 48 (1). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5237C9726795]
Klebsiella pneumoniae OmpR facilitates lung infection through transcriptional regulation of key virulence factors.
Janssen A.B., de Bakker V., Aprianto R., Trebosc V., Kemmer C., Pieren M., Veening J-W, 2024/01/11. Microbiology spectrum, 12 (1) pp. e0396623. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_003C384BFE4A]
 
Cell motility empowers bacterial contact weapons.
Booth S.C., Meacock O.J., Foster K.R., 2024/01/08. The ISME journal, 18 (1). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_55F6EE6DEEA3]
Entomopathogenic pseudomonads can share an insect host with entomopathogenic nematodes and their mutualistic bacteria.
Zwyssig M., Spescha A., Patt T., Belosevic A., Machado RAR, Regaiolo A., Keel C., Maurhofer M., 2024/01/08. The ISME journal, 18 (1). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F80B28E3BC45]
Spatial structure, chemotaxis and quorum sensing shape bacterial biomass accumulation in complex porous media.
Scheidweiler D., Bordoloi A.D., Jiao W., Sentchilo V., Bollani M., Chhun A., Engel P., de Anna P., 2024/01/02. Nature communications, 15 (1) p. 191. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C15F89398E71]
BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.
Dénéréaz J., Veening J.W., 2024. Access microbiology, 6 (1). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8C35F63DFBAE]
 
Beyond the traditional distinctions of genome editing: evaluating a vulnerability framework.
Angelioudaki I., Badea A.R., Bodo M., Fernández-Soto D., Karyampa E.S., Kokkinakis A., Kolisis N., Kominea X., Ozáez Armijos S., Vogel S. et al., 2024. Frontiers in genome editing, 6 p. 1426228. Peer-reviewed.
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Comparative Genomics of Clostridioides difficile.
Janezic S., Garneau J.R., Monot M., 2024. Advances in experimental medicine and biology, 1435 pp. 199-218. Peer-reviewed.
[DOI][Pmid][serval:BIB_62208635DEAF]
 
Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal Samples
Lamy-Besnier Quentin, Garneau Julian R., 2024. pp. 133-144 dans Viral Metagenomics, Springer.
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Expanding the Pseudomonas diversity of the wheat rhizosphere: four novel species antagonizing fungal phytopathogens and with plant-beneficial properties.
Poli N., Keel C.J., Garrido-Sanz D., 2024. Frontiers in microbiology, 15 p. 1440341. Peer-reviewed.
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Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions.
Sollier J., Basler M., Broz P., Dittrich P.S., Drescher K., Egli A., Harms A., Hierlemann A., Hiller S., King C.G. et al., 2024/01. Nature microbiology, 9 (1) pp. 1-3. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EB304466645B]
Role of extracellular matrix components in biofilm formation and adaptation of Pseudomonas ogarae F113 to the rhizosphere environment.
Blanco-Romero E., Garrido-Sanz D., Durán D., Rybtke M., Tolker-Nielsen T., Redondo-Nieto M., Rivilla R., Martín M., 2024. Frontiers in microbiology, 15 p. 1341728. Peer-reviewed.
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The ClpX chaperone and a hypermorphic FtsA variant with impaired self-interaction are mutually compensatory for coordinating Staphylococcus aureus cell division.
Henriksen C., Baek K.T., Wacnik K., Gallay C., Veening J.W., Foster S.J., Frees D., 2024/01. Molecular microbiology, 121 (1) pp. 98-115. Peer-reviewed.
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2023
Targeted treatment of injured nestmates with antimicrobial compounds in an ant society.
Frank E.T., Kesner L., Liberti J., Helleu Q., LeBoeuf A.C., Dascalu A., Sponsler D.B., Azuma F., Economo E.P., Waridel P. et al., 2023/12/29. Nature communications, 14 (1) p. 8446. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9260126B191C]
Diversity and evolution of an abundant ICEclc family of integrative and conjugative elements in Pseudomonas aeruginosa.
Benigno V., Carraro N., Sarton-Lohéac G., Romano-Bertrand S., Blanc D.S., van der Meer J.R., 2023/12/20. mSphere, 8 (6) pp. e0051723. Peer-reviewed.
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From microbiome composition to functional engineering, one step at a time.
Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al., 2023/12/20. Microbiology and molecular biology reviews, 87 (4) pp. e0006323. Peer-reviewed.
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Liver macrophages and sinusoidal endothelial cells execute vaccine-elicited capture of invasive bacteria.
Wang J., An H., Ding M., Liu Y., Wang S., Jin Q., Wu Q., Dong H., Guo Q., Tian X. et al., 2023/12/20. Science translational medicine, 15 (727) pp. eade0054. Peer-reviewed.
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Dairy phages escape CRISPR defence of Streptococcus thermophilus via the anti-CRISPR AcrIIA3.
Pastuszka A., Rousseau G.M., Somerville V., Levesque S., Fiset J.P., Goulet A., Doyon Y., Moineau S., 2023/12/16. International journal of food microbiology, 407 p. 110414. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_775A0AEEEEE8]
Molecular and evolutionary basis of O-antigenic polysaccharide-driven phage sensitivity in environmental pseudomonads.
Vacheron J., Heiman C.M., Garneau J.R., Kupferschmied P., de Jonge R., Garrido-Sanz D., Keel C., 2023/12/12. Microbiology spectrum, 11 (6) pp. e0204923. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_82744722D0F1]
Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers.
Baud GLC, Prasad A., Ellegaard K.M., Engel P., 2023/12/08. Genome biology, 24 (1) p. 283. Peer-reviewed.
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Evolutionary patterns and processes in animal microbiomes.
Mazel F., Knowles SCL, Videvall E., Sweeny A.R., 2023/12. Journal of evolutionary biology, 36 (12) pp. 1653-1658. Peer-reviewed.
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Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits.
Yersin S., Garneau J.R., Schneeberger PHH, Osman K.A., Cercamondi C.I., Muhummed A.M., Tschopp R., Zinsstag J., Vonaesch P., 2023/12/01. Scientific reports, 13 (1) p. 21342. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8F5F34068447]
Inhibition of broomrape germination by 2,4-diacetylphloroglucinol produced by environmental Pseudomonas.
Lurthy T., Perot S., Gerin-Eveillard F., Rey M., Wisniewski-Dyé F., Vacheron J., Prigent-Combaret C., 2023/12. Microbial biotechnology, 16 (12) pp. 2313-2325. Peer-reviewed.
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DNA methylation by CcrM contributes to genome maintenance in the Agrobacterium tumefaciens plant pathogen
Martin Sandra, Fournes Florian, Ambrosini Giovanna, Iseli Christian, BOJKOWSKA Karolina, Marquis Julien, Guex Nicolas, Collier Justine, 2023/11/28..
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Dynamic ParB-DNA interactions initiate and maintain a partition condensate for bacterial chromosome segregation.
Tišma M., Janissen R., Antar H., Martin-Gonzalez A., Barth R., Beekman T., van der Torre J., Michieletto D., Gruber S., Dekker C., 2023/11/27. Nucleic acids research, 51 (21) pp. 11856-11875. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_EEFC3A3FAD6F]
VirB, a transcriptional activator of virulence in Shigella flexneri, uses CTP as a cofactor.
Antar H., Gruber S., 2023/11/25. Communications biology, 6 (1) p. 1204. Peer-reviewed.
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Formation of Precipitation Ellipsoidal Disks and Spheres in the Wake of a Planar Diffusion Front.
Farkas S., Gazdag F., Detrich M., Mészáros M., Holló G., Schuszter G., Lagzi I., 2023/11/23. The journal of physical chemistry letters, 14 (46) pp. 10382-10387. Peer-reviewed.
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Synthetic genetic oscillators demonstrate the functional importance of phenotypic variation in pneumococcal-host interactions.
Rueff A.S., van Raaphorst R., Aggarwal S.D., Santos-Moreno J., Laloux G., Schaerli Y., Weiser J.N., Veening J.W., 2023/11/17. Nature communications, 14 (1) p. 7454. Peer-reviewed.
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Structural basis of bile salt extrusion and small-molecule inhibition in human BSEP.
Liu H., Irobalieva R.N., Kowal J., Ni D., Nosol K., Bang-Sørensen R., Lancien L., Stahlberg H., Stieger B., Locher K.P., 2023/11/10. Nature communications, 14 (1) p. 7296. Peer-reviewed.
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Structure of a membrane-bound menaquinol:organohalide oxidoreductase.
Cimmino L., Duarte A.G., Ni D., Ekundayo B.E., Pereira IAC, Stahlberg H., Holliger C., Maillard J., 2023/11/03. Nature communications, 14 (1) p. 7038. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C360B64EC249]
Evidence that fish death after Vibrio vulnificus infection is due to an acute inflammatory response triggered by a toxin of the MARTX family.
Hernández-Cabanyero C., Sanjuán E., Mercado L., Amaro C., 2023/11. Fish & shellfish immunology, 142 p. 109131. Peer-reviewed.
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Structure and function of the nuclear envelope and nuclear pores.
Fahrenkrog B., Gasser S.M., 2023/11. FEBS letters, 597 (22) pp. 2703-2704. Peer-reviewed.
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SUMO in the regulation of DNA repair and transcription at nuclear pores.
Gasser S.M., Stutz F., 2023/11. FEBS letters, 597 (22) pp. 2833-2850. Peer-reviewed.
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Biological hydrogen cyanide emission globally impacts the physiology of both HCN-emitting and HCN-perceiving Pseudomonas.
Anand A., Falquet L., Abou-Mansour E., L'Haridon F., Keel C., Weisskopf L., 2023/10/31. mBio, 14 (5) pp. e0085723. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_EF63E1760D48]
An Orphan VrgG Auxiliary Module Related to the Type VI Secretion Systems from Pseudomonas ogarae F113 Mediates Bacterial Killing.
Durán D., Vazquez-Arias D., Blanco-Romero E., Garrido-Sanz D., Redondo-Nieto M., Rivilla R., Martín M., 2023/10/24. Genes, 14 (11) p. 1979. Peer-reviewed.
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Synthetic Gene Circuits Combining CRISPR Interference and CRISPR Activation in E. coli: Importance of Equal Guide RNA Binding Affinities to Avoid Context-Dependent Effects.
Barbier I., Kusumawardhani H., Chauhan L., Harlapur P.V., Jolly M.K., Schaerli Y., 2023/10/20. ACS synthetic biology, 12 (10) pp. 3064-3071. Peer-reviewed.
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Oppositely Charged Nanoparticles Precipitate Not Only at the Point of Overall Electroneutrality.
Itatani M., Holló G., Zámbó D., Nakanishi H., Deák A., Lagzi I., 2023/10/12. The journal of physical chemistry letters, 14 (40) pp. 9003-9010. Peer-reviewed.
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Microbial interactions in theory and practice: when are measurements compatible with models?
Picot A., Shibasaki S., Meacock O.J., Mitri S., 2023/10. Current opinion in microbiology, 75 p. 102354. Peer-reviewed.
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Structural Basis of the Allosteric Inhibition of Human ABCG2 by Nanobodies.
Irobalieva R.N., Manolaridis I., Jackson S.M., Ni D., Pardon E., Stahlberg H., Steyaert J., Locher K.P., 2023/10/01. Journal of molecular biology, 435 (19) p. 168234. Peer-reviewed.
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Tracking bacteria at high density with FAST, the Feature-Assisted Segmenter/Tracker.
Meacock O.J., Durham W.M., 2023/10. PLoS computational biology, 19 (10) pp. e1011524. Peer-reviewed.
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Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere.
Garrido-Sanz D., Čaušević S., Vacheron J., Heiman C.M., Sentchilo V., van der Meer J.R., Keel C., 2023/09/29. Microbiome, 11 (1) p. 214. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_46EF5F18A042]
Whole-genome sequencing for One Health surveillance of antimicrobial resistance in conflict zones: a case study of Salmonella spp. and Campylobacter spp. in the West Bank, Palestine.
Abukhattab S., Hosch S., Abu-Rmeileh NME, Hasan S., Vonaesch P., Crump L., Hattendorf J., Daubenberger C., Zinsstag J., Schindler T., 2023/09/28. Applied and environmental microbiology, 89 (9) pp. e0065823. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0AF8DA3709D9]
Molecular characterization of the N-terminal half of TasA during amyloid-like assembly and its contribution to Bacillus subtilis biofilm formation.
Cámara-Almirón J., Domínguez-García L., El Mammeri N., Lends A., Habenstein B., de Vicente A., Loquet A., Romero D., 2023/09/22. NPJ biofilms and microbiomes, 9 (1) p. 68. Peer-reviewed.
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Probing hidden sectors with a muon beam: Implication of spin-0 dark matter mediators for the muon ( g − 2 ) anomaly and the validity of the Weiszäcker-Williams approach.
Sieber H., Kirpichnikov D. V., Voronchikhin I. V., Crivelli P., Gninenko S. N., Kirsanov M. M., Krasnikov N. V., Molina-Bueno L., Sekatskii S. K., 2023/09/21. Physical Review D, 108 (5) p. 056018 .
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A spatially structured mathematical model of the gut microbiome reveals factors that increase community stability.
Shibasaki S., Mitri S., 2023/09/15. iScience, 26 (9) p. 107499. Peer-reviewed.
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All roads lead to MRN regulation at telomeres: different paths to one solution.
Roisné-Hamelin F., Marcand S., 2023/09. Nature structural & molecular biology, 30 (9) pp. 1242-1243. Peer-reviewed.
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Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens.
Garrido-Sanz D., Vesga P., Heiman C.M., Altenried A., Keel C., Vacheron J., 2023/09. The ISME journal, 17 (9) pp. 1369-1381. Peer-reviewed.
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SMC-based immunity against extrachromosomal DNA elements.
Liu H.W., Roisné-Hamelin F., Gruber S., 2023/08/31. Biochemical Society transactions, 51 (4) pp. 1571-1583. Peer-reviewed.
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Sensory Systems in the Peripheral and Central Nervous Systems Shape Host Response During Infections.
Wyart C., Jim K.K., Prendergast A.E., 2023/08/10. Neuroscience, 525 pp. 47-50. Peer-reviewed.
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Colistin resistance mutations in phoQ can sensitize Klebsiella pneumoniae to IgM-mediated complement killing.
van der Lans SPA, Janet-Maitre M., Masson F.M., Walker K.A., Doorduijn D.J., Janssen A.B., van Schaik W., Attrée I., Rooijakkers SHM, Bardoel B.W., 2023/08/03. Scientific reports, 13 (1) p. 12618. Peer-reviewed.
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Factors Associated with Carriage of Enteropathogenic and Non-Enteropathogenic Viruses: A Reanalysis of Matched Case-Control Data from the AFRIBIOTA Site in Antananarivo, Madagascar.
Razanajatovo I.M., Andrianomiadana L., Habib A., Randrianarisoa M.M., Razafimanjato H., Rakotondrainipiana M., Andriantsalama P., Randriamparany R., Andriamandimby S.F., Vonaesch P. et al., 2023/08/02. Pathogens, 12 (8) p. 1009. Peer-reviewed.
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Cracking the membrane lipid code.
Melero A., Jiménez-Rojo N., 2023/08. Current opinion in cell biology, 83 p. 102203. Peer-reviewed.
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Effects of azithromycin and doxycycline on the vaginal microbiota of women with urogenital Chlamydia trachomatis infection: a substudy of the Chlazidoxy randomized controlled trial.
Tamarelle J., Penaud B., Tyssandier B., Guichoux E., de Barbeyrac B., Peuchant O., Chlazidoxy study group, 2023/08. Clinical microbiology and infection, 29 (8) pp. 1056-1062. Peer-reviewed.
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Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding.
Guex I., Mazza C., Dubey M., Batsch M., Li R., van der Meer J.R., 2023/08. PLoS computational biology, 19 (8) pp. e1011402. Peer-reviewed.
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The conserved iol gene cluster in Pseudomonas is involved in rhizosphere competence
Sánchez-Gil Juan J., Poppeliers Sanne W.M., Vacheron Jordan, Zhang Hao, Odijk Bart, Keel Christoph, de Jonge Ronnie, 2023/08. Current Biology, 33 (15) pp. 3097-3110.e6.
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Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Ni D., Lu X., Stahlberg H., Ekundayo B., 2023/07/21. Science advances, 9 (29) pp. eadh9002. Peer-reviewed.
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Fully co-factor-free ClearTau platform produces seeding-competent Tau fibrils for reconstructing pathological Tau aggregates.
Limorenko G., Tatli M., Kolla R., Nazarov S., Weil M.T., Schöndorf D.C., Geist D., Reinhardt P., Ehrnhoefer D.E., Stahlberg H. et al., 2023/07/04. Nature communications, 14 (1) p. 3939. Peer-reviewed.
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Considering variation in bee responses to stressors can reveal potential for resilience
Cabirol Amélie, Gómez-Moracho Tamara, Monchanin Coline, Pasquaretta Cristian, Lihoreau Mathieu, 2023/07. Journal of Applied Ecology, 60 (7) pp. 1435-1445.
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Prevalence and associated risk factors of intestinal parasitic infections among children in pastoralist and agro-pastoralist communities in the Adadle woreda of the Somali Regional State of Ethiopia.
Lanker K.C., Muhummed A.M., Cissé G., Zinsstag J., Hattendorf J., Yusuf R.B., Hassen S.B., Tschopp R., Vonaesch P., 2023/07. PLoS neglected tropical diseases, 17 (7) pp. e0011448. Peer-reviewed.
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Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression.
Kay T., Liberti J., Richardson T.O., McKenzie S.K., Weitekamp C.A., La Mendola C., Rüegg M., Kesner L., Szombathy N., McGregor S. et al., 2023/07. PLoS biology, 21 (7) pp. e3002203. Peer-reviewed.
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Transient chromatin compaction in fork restart.
Gasser S.M., 2023/07. Nature cell biology, 25 (7) pp. 931-932. Peer-reviewed.
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On the Applications of the Generalized Littlewood Theorem Concerning Integrals of the Logarithm of Analytical Functions to Elliptic Functions
Sekatskii Sergey, 2023/06/15. Axioms, 12 (6) p. 595.
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Structural basis of centromeric cohesion protection.
García-Nieto A., Patel A., Li Y., Oldenkamp R., Feletto L., Graham J.J., Willems L., Muir K.W., Panne D., Rowland B.D., 2023/06. Nature structural & molecular biology, 30 (6) pp. 853-859. Peer-reviewed.
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Secondary Structures of MERS-CoV, SARS-CoV, and SARS-CoV-2 Spike Proteins Revealed by Infrared Vibrational Spectroscopy.
D'Arco A., Di Fabrizio M., Mancini T., Mosetti R., Macis S., Tranfo G., Della Ventura G., Marcelli A., Petrarca M., Lupi S., 2023/05/31. International journal of molecular sciences, 24 (11) p. 9550. Peer-reviewed.
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Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks.
Baier F., Gauye F., Perez-Carrasco R., Payne J.L., Schaerli Y., 2023/05/24. Science advances, 9 (21) pp. eadf1773. Peer-reviewed.
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Structure-function analysis of the cyclic β-1,2-glucan synthase
Sedzicki Jaroslaw, Ni Dongchun, Lehmann Frank, Stahlberg Henning, Dehio Christoph, 2023/05/05..
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Breaking down microbial hierarchies.
Sulheim S., Mitri S., 2023/05. Trends in microbiology, 31 (5) pp. 426-427. Peer-reviewed.
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De novo design of protein interactions with learned surface fingerprints.
Gainza P., Wehrle S., Van Hall-Beauvais A., Marchand A., Scheck A., Harteveld Z., Buckley S., Ni D., Tan S., Sverrisson F. et al., 2023/05. Nature, 617 (7959) pp. 176-184. Peer-reviewed.
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DNA segment capture by Smc5/6 holocomplexes.
Taschner M., Gruber S., 2023/05. Nature structural & molecular biology, 30 (5) pp. 619-628. Peer-reviewed.
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A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont.
Botero J., Sombolestani A.S., Cnockaert M., Peeters C., Borremans W., De Vuyst L., Vereecken N.J., Michez D., Smagghe G., Bonilla-Rosso G. et al., 2023/04/29. Animal microbiome, 5 (1) p. 25. Peer-reviewed.
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Robustness and innovation in synthetic genotype networks.
Santos-Moreno J., Tasiudi E., Kusumawardhani H., Stelling J., Schaerli Y., 2023/04/28. Nature communications, 14 (1) p. 2454. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5D0D254CCA47]
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2.
Morales M., Sentchilo V., Carraro N., Causevic S., Vuarambon D., van der Meer J.R., 2023/04/27. mSystems, 8 (2) pp. e0117422. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E45105A859F9]
Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.
Sarton-Lohéac G., Nunes da Silva C.G., Mazel F., Baud G., de Bakker V., Das S., El Chazli Y., Ellegaard K., Garcia-Garcera M., Glover N. et al., 2023/04/25. mBio, 14 (2) pp. e0353822. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_43DDCAB27B31]
STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images.
Todorov H., Miguel Trabajo T., van der Meer J.R., 2023/04/20. mSphere, 8 (2) pp. e0065822. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CC63374B0997]
Adaption of Pseudomonas ogarae F113 to the Rhizosphere Environment-The AmrZ-FleQ Hub.
Blanco-Romero E., Durán D., Garrido-Sanz D., Redondo-Nieto M., Martín M., Rivilla R., 2023/04/15. Microorganisms, 11 (4) p. 1037. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0F6E4160B8BE]
Integration host factor regulates colonization factors in the bee gut symbiont Frischella perrara.
Schmidt K., Santos-Matos G., Leopold-Messer S., El Chazli Y., Emery O., Steiner T., Piel J., Engel P., 2023/04/14. eLife, 12 pp. e76182. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_04CA444001AB]
Cryo-EM structures and binding of mouse and human ACE2 to SARS-CoV-2 variants of concern indicate that mutations enabling immune escape could expand host range.
Ni D., Turelli P., Beckert B., Nazarov S., Uchikawa E., Myasnikov A., Pojer F., Trono D., Stahlberg H., Lau K., 2023/04. PLoS pathogens, 19 (4) pp. e1011206. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DE830FAC2E3E]
Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership.
Essock-Burns T., Lawhorn S., Wu L., McClosky S., Moriano-Gutierrez S., Ruby E.G., McFall-Ngai M.J., 2023/03/31. Microbiome, 11 (1) p. 68. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2DD10297C5D6]
Characterization of an atypical but widespread type IV secretion system for transfer of the integrative and conjugative element (ICEclc) in Pseudomonas putida.
Daveri A., Benigno V., van der Meer J.R., 2023/03/21. Nucleic acids research, 51 (5) pp. 2345-2362. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B2A6E41DC556]
Geosmin suppresses defensive behaviour and elicits unusual neural responses in honey bees.
Scarano F., Deivarajan Suresh M., Tiraboschi E., Cabirol A., Nouvian M., Nowotny T., Haase A., 2023/03/08. Scientific reports, 13 (1) p. 3851. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3257F6C0F508]
The architecture of Cidec-mediated interfaces between lipid droplets.
Ganeva I., Lim K., Boulanger J., Hoffmann P.C., Muriel O., Borgeaud A.C., Hagen WJH, Savage D.B., Kukulski W., 2023/02/28. Cell reports, 42 (2) p. 112107. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D48533B2E4A4]
Competition model explains trends of long-term fertilization in plant communities.
Yamauchi A., Ito K., Shibasaki S., 2023/02. Ecology and evolution, 13 (2) pp. e9832. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B642C769BE37]
 
Continuous irregular dynamics with multiple neutral trajectories permit species coexistence in competitive communities.
Yamauchi A., Ito K., Shibasaki S., Namba T., 2023/02. Theoretical population biology, 149 pp. 39-47. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6EBF0948ECC7]
Going with the membrane flow: the impact of polarized secretion on bulk plasma membrane flows.
Gerganova V., Martin S.G., 2023/02. The FEBS journal, 290 (3) pp. 669-676. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6391CD6FACE0]
A focus on yeast mating: From pheromone signaling to cell-cell fusion.
Sieber B., Coronas-Serna J.M., Martin S.G., 2023/01/15. Seminars in cell & developmental biology, 133 pp. 83-95. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5438E395CE11]
Gaps in the wall: understanding cell wall biology to tackle amoxicillin resistance in Streptococcus pneumoniae.
Gibson P.S., Veening J.W., 2023/01/11. Current opinion in microbiology, 72 p. 102261. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E6A07B0FAF00]
On the Use of the Generalized Littlewood Theorem Concerning Integrals of the Logarithm of Analytical Functions for the Calculation of Infinite Sums and the Analysis of Zeroes of Analytical Functions
Sekatskii Sergey, 2023/01/07. Axioms, 12 (1) p. 68.
[URN][DOI][WoS][serval:BIB_31BCF8A60BA9]
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia.
Asare P.T., Lee C.H., Hürlimann V., Teo Y., Cuénod A., Akduman N., Gekeler C., Afrizal A., Corthesy M., Kohout C. et al., 2023. Frontiers in microbiology, 14 p. 1104707. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3CB9A6F82FA0]
Competence remodels the pneumococcal cell wall exposing key surface virulence factors that mediate increased host adherence.
Minhas V., Domenech A., Synefiaridou D., Straume D., Brendel M., Cebrero G., Liu X., Costa C., Baldry M., Sirard J.C. et al., 2023/01. PLoS biology, 21 (1) pp. e3001990. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4DECE69353E7]
 
Corrigendum: A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia.
Asare P.T., Lee C.H., Hürlimann V., Teo Y., Cuénod A., Akduman N., Gekeler C., Afrizal A., Corthesy M., Kohout C. et al., 2023. Frontiers in microbiology, 14 p. 1208177. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D28F1D58D895]
Dynamics and consequences of nutrition-related microbial dysbiosis in early life: study protocol of the VITERBI GUT project.
Tamarelle J., Creze M.M., Savathdy V., Phonekeo S., Wallenborn J., Siengsounthone L., Fink G., Odermatt P., Kounnavong S., Sayasone S. et al., 2023. Frontiers in nutrition, 10 p. 1111478. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_87EAEC78D932]
Evolutionary and ecological role of extracellular contractile injection systems: from threat to weapon.
Heiman C.M., Vacheron J., Keel C., 2023. Frontiers in microbiology, 14 p. 1264877. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CD75D9947DAA]
The eukaryome of African children is influenced by geographic location, gut biogeography, and nutritional status.
Vonaesch P., Billy V., Mann A.E., Morien E., Habib A., Collard J.M., Dédé M., Kapel N., Sansonetti P.J., Parfrey L.W. et al., 2023. microLife, 4 pp. uqad033. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_95A010428D60]
2022
A Genome-Wide CRISPR Interference Screen Reveals an StkP-Mediated Connection between Cell Wall Integrity and Competence in Streptococcus salivarius.
Knoops A., Waegemans A., Lamontagne M., Decat B., Mignolet J., Veening J.W., Hols P., 2022/12/20. mSystems, 7 (6) pp. e0073522. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_30D01D9D0A5B]
Pneumolysin promotes host cell necroptosis and bacterial competence during pneumococcal meningitis as shown by whole-animal dual RNA-seq.
Jim K.K., Aprianto R., Koning R., Domenech A., Kurushima J., van de Beek D., Vandenbroucke-Grauls CMJE, Bitter W., Veening J.W., 2022/12/20. Cell reports, 41 (12) p. 111851. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_36598FCE0CFF]
Biochemically validated structural model of the 15-subunit intraflagellar transport complex IFT-B.
Petriman N.A., Loureiro-López M., Taschner M., Zacharia N.K., Georgieva M.M., Boegholm N., Wang J., Mourão A., Russell R.B., Andersen J.S. et al., 2022/12/15. The EMBO journal, 41 (24) pp. e112440. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3594A4EB9D49]
 
DNA-measuring Wadjet SMC ATPases restrict smaller circular plasmids by DNA cleavage.
Liu H.W., Roisné-Hamelin F., Beckert B., Li Y., Myasnikov A., Gruber S., 2022/12/15. Molecular cell, 82 (24) pp. 4727-4740.e6. Peer-reviewed.
[DOI][Pmid][serval:BIB_0D3204747A97]
Microbiome-mediated fructose depletion restricts murine gut colonization by vancomycin-resistant Enterococcus.
Isaac S., Flor-Duro A., Carruana G., Puchades-Carrasco L., Quirant A., Lopez-Nogueroles M., Pineda-Lucena A., Garcia-Garcera M., Ubeda C., 2022/12/13. Nature communications, 13 (1) p. 7718. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E3B77DBE3BD9]
Could a Shigella vaccine impact long-term health outcomes?: Summary report of an expert meeting to inform a Shigella vaccine public health value proposition, March 24 and 29, 2021.
Bagamian K.H., Puett C., Anderson J.D., Muhib F., Pecenka C., Behrman J., Breiman R.F., Edoka I., Horton S., Kang G. et al., 2022/12. Vaccine, 12 p. 100218. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_7A7FD9E71BF7]
 
Mechanism of cyclic β-glucan export by ABC transporter Cgt of Brucella.
Sedzicki J., Ni D., Lehmann F., Wu N., Zenobi R., Jung S., Stahlberg H., Dehio C., 2022/12. Nature structural & molecular biology, 29 (12) pp. 1170-1177. Peer-reviewed.
[DOI][Pmid][serval:BIB_3CFD130F13B0]
Microbial invasion of a toxic medium is facilitated by a resident community but inhibited as the community co-evolves.
Piccardi P., Alberti G., Alexander J.M., Mitri S., 2022/12. The ISME journal, 16 (12) pp. 2644-2652. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A43F9342651F]
Studying antibiotic persistence in vivo using the model organism Salmonella Typhimurium.
Newson J.P., Gaissmaier M.S., McHugh S.C., Hardt W.D., 2022/12. Current opinion in microbiology, 70 p. 102224. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_75A9F6790E13]
Trans-seeding of Alzheimer-related tau protein by a yeast prion.
Flach M., Leu C., Martinisi A., Skachokova Z., Frank S., Tolnay M., Stahlberg H., Winkler D.T., 2022/12. Alzheimer's & dementia, 18 (12) pp. 2481-2492. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_919BBF0D2D6A]
Condensation of the fusion focus by the intrinsically disordered region of the formin Fus1 is essential for cell-cell fusion.
Billault-Chaumartin I., Muriel O., Michon L., Martin S.G., 2022/11/07. Current biology, 32 (21) pp. 4752-4761.e10. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_958E629AC4B0]
Ultrastructure of COPII vesicle formation in yeast characterized by correlative light and electron microscopy.
Melero A., Boulanger J., Kukulski W., Miller E.A., 2022/11/01. Molecular biology of the cell, 33 (13) pp. ar122. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C5397E58D316]
 
Classifying Interactions in a Synthetic Bacterial Community Is Hindered by Inhibitory Growth Medium.
Dos Santos A.R., Di Martino R., Testa SEA, Mitri S., 2022/10/26. mSystems, 7 (5) pp. e0023922. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_91D9BD85F2C5]
Chromosome remodelling by SMC/Condensin in B. subtilis is regulated by monomeric Soj/ParA during growth and sporulation.
Roberts D.M., Anchimiuk A., Kloosterman T.G., Murray H., Wu L.J., Gruber S., Errington J., 2022/10/11. Proceedings of the National Academy of Sciences of the United States of America, 119 (41) pp. e2204042119. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_DD6E45BF5EF5]
Stunted children display ectopic small intestinal colonization by oral bacteria, which cause lipid malabsorption in experimental models.
Vonaesch P., Araújo J.R., Gody J.C., Mbecko J.R., Sanke H., Andrianonimiadana L., Naharimanananirina T., Ningatoloum S.N., Vondo S.S., Gondje P.B. et al., 2022/10/11. Proceedings of the National Academy of Sciences of the United States of America, 119 (41) pp. e2209589119. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_3AD20D6368D6]
 
The gut microbiota affects the social network of honeybees.
Liberti J., Kay T., Quinn A., Kesner L., Frank E.T., Cabirol A., Richardson T.O., Engel P., Keller L., 2022/10. Nature ecology & evolution, 6 (10) pp. 1471-1479. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_185C1F4D6366]
Lactobacillus supports Clostridiales to restrict gut colonization by multidrug-resistant Enterobacteriaceae.
Djukovic A., Garzón M.J., Canlet C., Cabral V., Lalaoui R., García-Garcerá M., Rechenberger J., Tremblay-Franco M., Peñaranda I., Puchades-Carrasco L. et al., 2022/09/24. Nature communications, 13 (1) p. 5617. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CAA9228C8C73]
 
Fluorescent d-Amino Acids for Super-resolution Microscopy of the Bacterial Cell Wall.
Zhang C., Reymond L., Rutschmann O., Meyer M.A., Denereaz J., Qiao J., Ryckebusch F., Griffié J., Stepp W.L., Manley S., 2022/09/16. ACS chemical biology, 17 (9) pp. 2418-2424. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E16A6CE91E87]
mNG-tagged fusion proteins and nanobodies to visualize tropomyosins in yeast and mammalian cells.
Hatano T., Lim T.C., Billault-Chaumartin I., Dhar A., Gu Y., Massam-Wu T., Scott W., Adishesha S., Chapa-Y-Lazo B., Springall L. et al., 2022/09/15. Journal of cell science, 135 (18) pp. jcs260288. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_E5AA6797B9AB]
Factors Associated With Incidence and Spontaneous Clearance of Molecular-Bacterial Vaginosis: Results From a Longitudinal Frequent-Sampling Observational Study.
Tamarelle J., Shardell M.D., Ravel J., Brotman R.M., 2022/09/01. Sexually transmitted diseases, 49 (9) pp. 649-656. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B9297A67C73F]
A joint-ParB interface promotes Smc DNA recruitment.
Bock F.P., Liu H.W., Anchimiuk A., Diebold-Durand M.L., Gruber S., 2022/08/30. Cell reports, 40 (9) p. 111273. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_202D0C656B23]
Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities.
Somerville V., Schowing T., Chabas H., Schmidt R.S., von Ah U., Bruggmann R., Engel P., 2022/08/27. Microbiome, 10 (1) p. 137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B0F961C038E]
Subtherapeutic Doses of Vancomycin Synergize with Bacteriophages for Treatment of Experimental Methicillin-Resistant Staphylococcus aureus Infective Endocarditis.
Save J., Que Y.A., Entenza J., Resch G., 2022/08/16. Viruses, 14 (8) p. 1792. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A083F3FD86C1]
Putative Biomarkers of Environmental Enteric Disease Fail to Correlate in a Cross-Sectional Study in Two Study Sites in Sub-Saharan Africa.
Vonaesch P., Winkel M., Kapel N., Nestoret A., Barbot-Trystram L., Pontoizeau C., Barouki R., Rakotondrainipiana M., Kandou K., Andriamanantena Z. et al., 2022/08/12. Nutrients, 14 (16) p. 3312. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_711D1A977AA9]
 
Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Hu C., Ni D., Nam K.H., Majumdar S., McLean J., Stahlberg H., Terns M.P., Ke A., 2022/08/04. Molecular cell, 82 (15) pp. 2754-2768.e5. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BC6F62E8C518]
 
The secret life of plant-beneficial rhizosphere bacteria: insects as alternative hosts.
Pronk LJU, Bakker PAHM, Keel C., Maurhofer M., Flury P., 2022/08. Environmental microbiology, 24 (8) pp. 3273-3289. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F462FE0DBD87]
Antibiotic Exposure Leads to Reduced Phage Susceptibility in Vancomycin Intermediate Staphylococcus aureus (VISA).
McCallin S., Menzi C., Lassen S., Daraspe J., Oechslin F., Moreillon P., 2022/07/19. Antimicrobial agents and chemotherapy, 66 (7) pp. e0224721. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D6EF9784BB73]
Regulation of extracellular matrix components by AmrZ is mediated by c-di-GMP in Pseudomonas ogarae F113.
Blanco-Romero E., Garrido-Sanz D., Durán D., Rivilla R., Redondo-Nieto M., Martín M., 2022/07/13. Scientific reports, 12 (1) p. 11914. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6654D7573309]
 
Factors associated with anaemia among preschool- age children in underprivileged neighbourhoods in Antananarivo, Madagascar.
Randrianarisoa M.M., Rakotondrainipiana M., Randriamparany R., Andriantsalama P.V., Randrianarijaona A., Habib A., Robinson A., Raharimalala L., Hunald F.A., Etienne A. et al., 2022/07/09. BMC public health, 22 (1) p. 1320. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_26C7EE805CB3]
Actin assembly requirements of the formin Fus1 to build the fusion focus.
Billault-Chaumartin I., Michon L., Anderson C.A., Yde S.E., Suarez C., Iwaszkiewicz J., Zoete V., Kovar D.R., Martin S.G., 2022/07/01. Journal of cell science, 135 (13) pp. jcs260289. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3B4B0AEC5924]
 
Ecological modelling approaches for predicting emergent properties in microbial communities.
van den Berg N.I., Machado D., Santos S., Rocha I., Chacón J., Harcombe W., Mitri S., Patil K.R., 2022/07. Nature ecology & evolution, 6 (7) pp. 855-865. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9CB7EA70CD91]
ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment.
Tišma M., Panoukidou M., Antar H., Soh Y.M., Barth R., Pradhan B., Barth A., van der Torre J., Michieletto D., Gruber S. et al., 2022/07. Science advances, 8 (26) pp. eabn3299. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8BE4A8F64584]
Pivotal role of O-antigenic polysaccharide display in the sensitivity against phage tail-like particles in environmental Pseudomonas kin competition.
Heiman C.M., Maurhofer M., Calderon S., Dupasquier M., Marquis J., Keel C., Vacheron J., 2022/07. The ISME journal, 16 (7) pp. 1683-1693. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B47F87DA7122]
Strontium Substituted Tricalcium Phosphate Bone Cement: Short and Long‐Term Time‐Resolved Studies and In Vitro Properties
Rau Julietta V., Fadeeva Inna V., Forysenkova Anna A., Davydova Galina A., Fosca Marco, Filippov Yaroslav Yu., Antoniac Iulian V., Antoniac Aurora, D'Arco Annalisa, Di Fabrizio Marta et al., 2022/07. Advanced Materials Interfaces, 9 (21).
[URN][DOI][WoS][serval:BIB_9A2F11FB4F1C]
The acquisition of clinically relevant amoxicillin resistance in Streptococcus pneumoniae requires ordered horizontal gene transfer of four loci.
Gibson P.S., Bexkens E., Zuber S., Cowley L.A., Veening J.W., 2022/07. PLoS pathogens, 18 (7) pp. e1010727. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_05977A135425]
Amoxicillin-resistant Streptococcus pneumoniae can be resensitized by targeting the mevalonate pathway as indicated by sCRilecs-seq.
Dewachter L., Dénéréaz J., Liu X., de Bakker V., Costa C., Baldry M., Sirard J.C., Veening J.W., 2022/06/24. eLife, 11 pp. e75607. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_93696BAFA5F6]
A bistable prokaryotic differentiation system underlying development of conjugative transfer competence.
Sulser S., Vucicevic A., Bellini V., Moritz R., Delavat F., Sentchilo V., Carraro N., van der Meer J.R., 2022/06. PLoS genetics, 18 (6) pp. e1010286. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_4D561966E16C]
 
De novo design of site-specific protein interactions with learned surface fingerprints
Gainza Pablo, Wehrle Sarah, Van Hall-Beauvais Alexandra, Marchand Anthony, Scheck Andreas, Harteveld Zander, Buckley Stephen, Ni Dongchun, Tan Shuguang, Sverrisson Freyr et al., 2022/06..
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Engineering synthetic spatial patterns in microbial populations and communities.
Barbier I., Kusumawardhani H., Schaerli Y., 2022/06. Current opinion in microbiology, 67 p. 102149. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1E95F9FE260E]
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