Swiss Institute of Bioinformatics

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1639 publications

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2019
 
EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains.
Donaldson-Collier M.C., Sungalee S., Zufferey M., Tavernari D., Katanayeva N., Battistello E., Mina M., Douglass K.M., Rey T., Raynaud F. et al., 2019/03. Nature genetics, 51 (3) pp. 517-528. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_32717C0BB8B8]
Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.
Justice A.E., Karaderi T., Highland H.M., Young K.L., Graff M., Lu Y., Turcot V., Auer P.L., Fine R.S., Guo X. et al., 2019/03. Nature genetics, 51 (3) pp. 452-469. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3FE73F14651D]
QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time.
Neuenschwander S., Michaud F., Goudet J., 2019/03/01. Bioinformatics, 35 (5) pp. 886-888. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6D2F79671E91]
Differential regulation of RNA polymerase III genes during liver regeneration.
Yeganeh M., Praz V., Carmeli C., Villeneuve D., Rib L., Guex N., Herr W., Delorenzi M., Hernandez N., CycliX consortium, 2019/02/28. Nucleic Acids Research, 47 (4) pp. 1786-1796. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_014840C5C9E3]
Rapid Recapitulation of Nonalcoholic Steatohepatitis upon Loss of Host Cell Factor 1 Function in Mouse Hepatocytes
Minocha S., Villeneuve D., Praz V., Moret C., Lopes M., Pinatel D., Rib L., Guex N., Herr W., 2019/02/15. Molecular and cellular biology, 39 (5) pp. UNSP e00405. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_212558107C3D]
HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses.
Langer S., Hammer C., Hopfensperger K., Klein L., Hotter D., De Jesus P.D., Herbert K.M., Pache L., Smith N., van der Merwe J.A. et al., 2019/02/05. eLife, 8. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F2CB05F54083]
 
Human genomics of acute liver failure due to hepatitis B virus infection: An exome sequencing study in liver transplant recipients.
Asgari S., Chaturvedi N., Scepanovic P., Hammer C., Semmo N., Giostra E., Müllhaupt B., Angus P., Thompson A.J., Moradpour D. et al., 2019/02. Journal of viral hepatitis, 26 (2) pp. 271-277. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FF674E9FCBB2]
PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Peters K., Bradbury J., Bergmann S., Capuccini M., Cascante M., de Atauri P., Ebbels TMD, Foguet C., Glen R., Gonzalez-Beltran A. et al., 2019/02/01. GigaScience, 8 (2) pp. giy149. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_18192C20F501]
Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes.
Parker D.J., Bast J., Jalvingh K., Dumas Z., Robinson-Rechavi M., Schwander T., 2019/02/01. Molecular biology and evolution, 36 (2) pp. 350-364. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_50533A2E2A2E]
 
Uncoupling protein 2 reprograms the tumor microenvironment to support the anti-tumor immune cycle.
Cheng W.C., Tsui Y.C., Ragusa S., Koelzer V.H., Mina M., Franco F., Läubli H., Tschumi B., Speiser D., Romero P. et al., 2019/02. Nature immunology, 20 (2) pp. 206-217. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A10BFBC01F0D]
Endothelial Calcineurin Signaling Restrains Metastatic Outgrowth by Regulating Bmp2.
Hendrikx S., Coso S., Prat-Luri B., Wetterwald L., Sabine A., Franco C.A., Nassiri S., Zangger N., Gerhardt H., Delorenzi M. et al., 2019/01/29. Cell reports, 26 (5) pp. 1227-1241.e6. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B316C6C93CB8]
Are TADs supercoiled?
Racko D., Benedetti F., Dorier J., Stasiak A., 2019/01/25. Nucleic acids research, 47 (2) pp. 521-532. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_12BCCBEC8B1A]
Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.
Kilpeläinen T.O., Bentley A.R., Noordam R., Sung Y.J., Schwander K., Winkler T.W., Jakupović H., Chasman D.I., Manning A., Ntalla I. et al., 2019/01/22. Nature communications, 10 (1) p. 376. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1B8EF42248BA]
Environment and evolutionary history shape phylogenetic turnover in European tetrapods.
Saladin B., Thuiller W., Graham C.H., Lavergne S., Maiorano L., Salamin N., Zimmermann N.E., 2019/01/16. Nature communications, 10 (1) p. 249. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B3A2A15C22CE]
Intratumoral Tcf1+PD-1+CD8+ T Cells with Stem-like Properties Promote Tumor Control in Response to Vaccination and Checkpoint Blockade Immunotherapy.
Siddiqui I., Schaeuble K., Chennupati V., Fuertes Marraco S.A., Calderon-Copete S., Pais Ferreira D., Carmona S.J., Scarpellino L., Gfeller D., Pradervand S. et al., 2019/01/15. Immunity, 50 (1) pp. 195-211.e10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8DBCBF3E53B5]
KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P., Rubach P., Goundaroulis D., Dorier J., Sulkowski P., Millett K.C., Rawdon E.J., Stasiak A., Sulkowska J.I., 2019/01/08. Nucleic acids research, 47 (D1) pp. D367-D375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CACEFF8F3AA5]
Updates in Rhea: SPARQLing biochemical reaction data.
Lombardot T., Morgat A., Axelsen K.B., Aimo L., Hyka-Nouspikel N., Niknejad A., Ignatchenko A., Xenarios I., Coudert E., Redaschi N. et al., 2019/01/08. Nucleic acids research, 47 (D1) pp. D596-D600. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_593223E3F0D5]
 
A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms.
de La Harpe M., Hess J., Loiseau O., Salamin N., Lexer C., Paris M., 2019/01. Molecular ecology resources, 19 (1) pp. 221-234. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F8A3CE0FBD8A]
An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar.
Famiglietti M.L., Estreicher A., Breuza L., Poux S., Redaschi N., Xenarios I., Bridge A., UniProt Consortium, 2019/01/01. Database, 2019. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7760CD669F21]
Analysis of Secondary Structure Biases in Naturally Presented HLA-I Ligands.
Perez MAS, Bassani-Sternberg M., Coukos G., Gfeller D., Zoete V., 2019. Frontiers in immunology, 10 p. 2731. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BA3DEC8F83B0]
Assigning confidence scores to homoeologs using fuzzy logic.
Glover N.M., Altenhoff A., Dessimoz C., 2019. PeerJ, 6 pp. e6231. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D4984F5E8391]
CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates.
Meyer X., Dib L., Salamin N., 2019. Nucleic Acids Research, 47 (D1) pp. D50-D54. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C6FD42281624]
Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors.
Silvestro D., Tejedor M.F., Serrano-Serrano M.L., Loiseau O., Rossier V., Rolland J., Zizka A., Höhna S., Antonelli A., Salamin N., 2019. Systematic Biology, 68 (1) pp. 78-92. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2044A2BD7D99]
Enabling semantic queries across federated bioinformatics databases.
Sima A.C., Mendes de Farias T., Zbinden E., Anisimova M., Gil M., Stockinger H., Stockinger K., Robinson-Rechavi M., Dessimoz C., 2019/01/01. Database, 2019. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_ED991CD0F569]
Guidelines for performing Mendelian randomization investigations: update for summer 2023.
Burgess S., Davey Smith G., Davies N.M., Dudbridge F., Gill D., Glymour M.M., Hartwig F.P., Kutalik Z., Holmes M.V., Minelli C. et al., 2019. Wellcome open research, 4 p. 186. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_AD4F8168E502]
 
How Much Does GenoGuard Really "Guard"? : An Empirical Analysis of Long-Term Security for Genomic Data
Oprisanu Bristena, Dessimoz Christophe, De Cristofaro Emiliano, 2019..
[DOI][serval:BIB_284C6FFB1062]
 
Inferring Orthology and Paralogy.
Altenhoff A.M., Glover N.M., Dessimoz C., 2019. Methods in molecular biology, 1910 pp. 149-175. Peer-reviewed.
[DOI][Pmid][serval:BIB_062874BB14CB]
Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector Aedes albopictus.
Pischedda E., Scolari F., Valerio F., Carballar-Lejarazú R., Catapano P.L., Waterhouse R.M., Bonizzoni M., 2019. Frontiers in genetics, 10 p. 93. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6C74E041CB22]
Of Genes and Genomes: Mosquito Evolution and Diversity.
Ruzzante L., Reijnders MJMF, Waterhouse R.M., 2019/01. Trends in parasitology, 35 (1) pp. 32-51. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3108EF660FA6]
 
Oxidation State Dependent Conformational Changes of HMGB1 Regulate the Formation of the CXCL12/HMGB1 Heterocomplex.
Fassi EMA, Sgrignani J., D'Agostino G., Cecchinato V., Garofalo M., Grazioso G., Uguccioni M., Cavalli A., 2019. Computational and structural biotechnology journal, 17 pp. 886-894. Peer-reviewed.
[DOI][Pmid][serval:BIB_59DF5B7C4E43]
Persistence of Candida albicans in the Oral Mucosa Induces a Curbed Inflammatory Host Response That Is Independent of Immunosuppression.
Kirchner F.R., Littringer K., Altmeier S., Tran VDT, Schönherr F., Lemberg C., Pagni M., Sanglard D., Joller N., LeibundGut-Landmann S., 2019. Frontiers in immunology, 10 p. 330. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D64DED349677]
 
Semantic Integration and Enrichment of Heterogeneous Biological Databases.
Sima A.C., Stockinger K., de Farias T.M., Gil M., 2019. Methods in molecular biology, 1910 pp. 655-690. Peer-reviewed.
[DOI][Pmid][serval:BIB_3D396F44C44D]
Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment.
Bezler A., Braukmann F., West S.M., Duplan A., Conconi R., Schütz F., Gönczy P., Piano F., Gunsalus K., Miska E.A. et al., 2019. PLoS Genetics, 15 (2) pp. e1007905. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_298BFAD57531]
 
Using BUSCO to Assess Insect Genomic Resources
Waterhouse Robert M., Seppey Mathieu, Simão Felipe A., Zdobnov Evgeny M., 2019. pp. 59-74 dans Insect Genomics, Springer New York.
[URN][DOI][Pmid][serval:BIB_EBF3D80AC001]
 
VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links
Mendes de Farias Tarcisio, Stockinger Kurt, Dessimoz Christophe, 2019. Lecture Notes in Computer Science pp. 607-625. Peer-reviewed.
[DOI][serval:BIB_B5FCAC161AA9]
2018
Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.
Bochkareva O.O., Moroz E.V., Davydov I.I., Gelfand M.S., 2018/12/27. BMC genomics, 19 (1) p. 965. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6472B5BCD4D2]
 
Rational Design, Synthesis, and Pharmacological Characterization of Novel Ghrelin Receptor Inverse Agonists as Potential Treatment against Obesity-Related Metabolic Diseases.
Daina A., Giuliano C., Pietra C., Wang J., Chi Y., Zou Z., Li F., Yan Z., Zhou Y., Guainazzi A. et al., 2018/12/27. Journal of medicinal chemistry, 61 (24) pp. 11039-11060. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_99AA6CB8899E]
Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.
Yap C.X., Sidorenko J., Wu Y., Kemper K.E., Yang J., Wray N.R., Robinson M.R., Visscher P.M., 2018/12/20. Nature communications, 9 (1) p. 5407. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_48C4A35D6C35]
 
The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands.
Gfeller D., Guillaume P., Michaux J., Pak H.S., Daniel R.T., Racle J., Coukos G., Bassani-Sternberg M., 2018/12/15. Journal of immunology, 201 (12) pp. 3705-3716. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7CB706F40FEB]
Phylogenomics and the evolution of hemipteroid insects.
Johnson K.P., Dietrich C.H., Friedrich F., Beutel R.G., Wipfler B., Peters R.S., Allen J.M., Petersen M., Donath A., Walden KKO et al., 2018/12/11. Proceedings of the National Academy of Sciences of the United States of America, 115 (50) pp. 12775-12780. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3E1F45E33CFB]
Comparison of computational methods for the identification of topologically associating domains.
Zufferey M., Tavernari D., Oricchio E., Ciriello G., 2018/12/10. Genome biology, 19 (1) p. 217. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9D5DBEB6BBFB]
 
Early human dispersals within the Americas.
Moreno-Mayar J.V., Vinner L., de Barros Damgaard P., de la Fuente C., Chan J., Spence J.P., Allentoft M.E., Vimala T., Racimo F., Pinotti T. et al., 2018/12/07. Science, 362 (6419) pp. eaav2621. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_62FDEB830CCD]
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo.
Liu J., Robinson-Rechavi M., 2018/12/01. Molecular biology and evolution, 35 (12) pp. 2862-2872. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5705072272F0]
 
Additional evidence of the link between mtDNA copy number and the body mass index.
Skuratovskaia D.A., Sofronova J.K., Zatolokin P.A., Popadin K.Y., Vasilenko M.A., Litvinova L.S., Mazunin I.O., 2018/12. Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis, 29 (8) pp. 1240-1244. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1D26BE0D9AED]
 
Comprehensive Genomic Profiling of Patient-matched Head and Neck Cancer Cells: A Preclinical Pipeline for Metastatic and Recurrent Disease.
Nisa L., Barras D., Medová M., Aebersold D.M., Medo M., Poliaková M., Koch J., Bojaxhiu B., Eliçin O., Dettmer M.S. et al., 2018/12. Molecular cancer research, 16 (12) pp. 1912-1926. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_13A592D7547E]
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome.
Mylonas R., Beer I., Iseli C., Chong C., Pak H.S., Gfeller D., Coukos G., Xenarios I., Müller M., Bassani-Sternberg M., 2018/12. Molecular & cellular proteomics, 17 (12) pp. 2347-2357. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A79DB078A6D8]
 
Population-based outcome analysis of diffuse large B-cell lymphoma in people living with HIV infection and competent individuals.
Conconi A., Zucca E., Margiotta-Casaluci G., Darling K., Hasse B., Battegay M., Staehelin C., Novak U., Schmid P., Scherrer A. et al., 2018/12. Hematological oncology, 36 (5) pp. 757-764. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3E03D5BE9E1B]
The conserved threonine-rich region of the HCF-1<sub>PRO</sub> repeat activates promiscuous OGT:UDP-GlcNAc glycosylation and proteolysis activities.
Kapuria V., Röhrig U.F., Waridel P., Lammers F., Borodkin V.S., van Aalten DMF, Zoete V., Herr W., 2018/11/16. The Journal of biological chemistry, 293 (46) pp. 17754-17768. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2C5B11AB86FD]
 
4-epi-Isofagomine derivatives as pharmacological chaperones for the treatment of lysosomal diseases linked to β-galactosidase mutations: Improved synthesis and biological investigations.
Front S., Almeida S., Zoete V., Charollais-Thoenig J., Gallienne E., Marmy C., Pilloud V., Marti R., Wood T., Martin O.R. et al., 2018/11/01. Bioorganic & medicinal chemistry, 26 (20) pp. 5462-5469. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_83B58836AAA0]
 
Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.
Ligthart S., Vaez A., Võsa U., Stathopoulou M.G., de Vries P.S., Prins B.P., Van der Most P.J., Tanaka T., Naderi E., Rose L.M. et al., 2018/11/01. American journal of human genetics, 103 (5) pp. 691-706. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_26357D5FDD21]
Genome Sequence of the Wheat Stem Sawfly, Cephus cinctus, Representing an Early-Branching Lineage of the Hymenoptera, Illuminates Evolution of Hymenopteran Chemoreceptors.
Robertson H.M., Waterhouse R.M., Walden KKO, Ruzzante L., Reijnders MJMF, Coates B.S., Legeai F., Gress J.C., Biyiklioglu S., Weaver D.K. et al., 2018/11/01. Genome biology and evolution, 10 (11) pp. 2997-3011. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_768CA970E2F8]
RecPhyloXML: a format for reconciled gene trees.
Duchemin W., Gence G., Arigon Chifolleau A.M., Arvestad L., Bansal M.S., Berry V., Boussau B., Chevenet F., Comte N., Davín A.A. et al., 2018/11/01. Bioinformatics, 34 (21) pp. 3646-3652. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6316B688D65]
 
The fitness landscape of the codon space across environments.
Fragata I., Matuszewski S., Schmitz M.A., Bataillon T., Jensen J.D., Bank C., 2018/11. Heredity, 121 (5) pp. 422-437. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FE09A1EFBA24]
Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.
Teumer A., Chaker L., Groeneweg S., Li Y., Di Munno C., Barbieri C., Schultheiss U.T., Traglia M., Ahluwalia T.S., Akiyama M. et al., 2018/10/26. Nature communications, 9 (1) p. 4455. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ED0E30FBA866]
Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors.
Saghafinia S., Mina M., Riggi N., Hanahan D., Ciriello G., 2018/10/23. Cell reports, 25 (4) pp. 1066-1080.e8. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ADC19C98A2C8]
Changes in resource partitioning between and within organs support growth adjustment to neighbor proximity in <i>Brassicaceae</i> seedlings.
de Wit M., George G.M., Ince Y.Ç., Dankwa-Egli B., Hersch M., Zeeman S.C., Fankhauser C., 2018/10/16. Proceedings of the National Academy of Sciences of the United States of America, 115 (42) pp. E9953-E9961. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4C004C061297]
 
Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms.
Bellenberg S., Buetti-Dinh A., Galli V., Ilie O., Herold M., Christel S., Boretska M., Pivkin I.V., Wilmes P., Sand W. et al., 2018/10/15. Applied and environmental microbiology, 84 (20). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D1DFE6F8CAC4]
Chromatin Loop Extrusion and Chromatin Unknotting.
Racko D., Benedetti F., Goundaroulis D., Stasiak A., 2018/10/11. Polymers, 10 (10) p. 1126. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_381D19E8C38F]
Evolutionary and developmental dynamics of sex-biased gene expression in common frogs with proto-Y chromosomes.
Ma W.J., Veltsos P., Sermier R., Parker D.J., Perrin N., 2018/10/05. Genome biology, 19 (1) p. 156. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3979DBC2E6AC]
 
Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.
Evangelou E., Warren H.R., Mosen-Ansorena D., Mifsud B., Pazoki R., Gao H., Ntritsos G., Dimou N., Cabrera C.P., Karaman I. et al., 2018/10. Nature genetics, 50 (10) pp. 1412-1425. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5E98824C1D5E]
How to estimate kinship.
Goudet J., Kay T., Weir B.S., 2018/10. Molecular ecology, 27 (20) pp. 4121-4135. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5FE0C333D531]
 
T cells in patients with narcolepsy target self-antigens of hypocretin neurons.
Latorre D., Kallweit U., Armentani E., Foglierini M., Mele F., Cassotta A., Jovic S., Jarrossay D., Mathis J., Zellini F. et al., 2018/10. Nature, 562 (7725) pp. 63-68. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D9ED0A92CEEC]
Two convergent pathways of DNA knotting in replicating DNA molecules as revealed by θ-curve analysis.
O'Donnol D., Stasiak A., Buck D., 2018/09/28. Nucleic acids research, 46 (17) pp. 9181-9188. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A21115AE0E58]
 
Evolutionary dynamics and molecular features of intra-tumor heterogeneity
Raynaud Franck, Mina Marco, Ciriello Giovanni, 2018/09/13..
[DOI][WoS][Pmid][serval:BIB_B942EBEE4DEC]
Cycles of gene expression and genome response during mammalian tissue regeneration.
Rib L., Villeneuve D., Minocha S., Praz V., Hernandez N., Guex N., Herr W., CycliX Consortium, 2018/09/12. Epigenetics & chromatin, 11 (1) p. 52. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B98F4A2BF637]
Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.
Schaerli Y., Jiménez A., Duarte J.M., Mihajlovic L., Renggli J., Isalan M., Sharpe J., Wagner A., 2018/09/10. Molecular systems biology, 14 (9) pp. e8102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E4CEE618A944]
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species.
Liu J., Robinson-Rechavi M., 2018/09/01. Genome biology and evolution, 10 (9) pp. 2266-2277. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F61F6F919170]
Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability.
Raynaud F., Mina M., Tavernari D., Ciriello G., 2018/09. PLoS genetics, 14 (9) pp. e1007669. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FD4F973854FC]
Prioritising candidate genes causing QTL using hierarchical orthologous groups.
Warwick Vesztrocy A., Dessimoz C., Redestig H., 2018/09/01. Bioinformatics, 34 (17) pp. i612-i619. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6DAC1269D35C]
 
Endpoint-restricted adiabatic free energy dynamics approach for the exploration of biomolecular conformational equilibria.
Cuendet M.A., Margul D.T., Schneider E., Vogt-Maranto L., Tuckerman M.E., 2018/08/21. The Journal of chemical physics, 149 (7) p. 072316. Peer-reviewed.
[DOI][Pmid][serval:BIB_046D568DFD40]
In-solution Y-chromosome capture-enrichment on ancient DNA libraries.
Cruz-Dávalos D.I., Nieves-Colón M.A., Sockell A., Poznik G.D., Schroeder H., Stone A.C., Bustamante C.D., Malaspinas A.S., Ávila-Arcos M.C., 2018/08/14. BMC genomics, 19 (1) p. 608. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2A08928BDEB8]
A systems genetics resource and analysis of sleep regulation in the mouse.
Diessler S., Jan M., Emmenegger Y., Guex N., Middleton B., Skene D.J., Ibberson M., Burdet F., Götz L., Pagni M. et al., 2018/08. PLoS biology, 16 (8) pp. e2005750. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BD5E621589B6]
 
Clinical and pharmacogenetic determinants of 5-fluorouracyl/leucovorin/irinotecan toxicity: Results of the PETACC-3 trial.
Tejpar S., Yan P., Piessevaux H., Dietrich D., Brauchli P., Klingbiel D., Fiocca R., Delorenzi M., Bosman F., Roth A.D., 2018/08. European journal of cancer, 99 pp. 66-77. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BEFEC6CAADF3]
Detection of circulating tumour cell clusters in human glioblastoma.
Krol I., Castro-Giner F., Maurer M., Gkountela S., Szczerba B.M., Scherrer R., Coleman N., Carreira S., Bachmann F., Anderson S. et al., 2018/08. British journal of cancer, 119 (4) pp. 487-491. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_269BEE7656D8]
 
The transcription factor Rfx7 limits metabolism of NK cells and promotes their maintenance and immunity.
Castro W., Chelbi S.T., Niogret C., Ramon-Barros C., Welten SPM, Osterheld K., Wang H., Rota G., Morgado L., Vivier E. et al., 2018/08. Nature immunology, 19 (8) pp. 809-820. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A76D5C40117C]
 
Towards in the Field Fast Pathogens Detection Using FPGAs
Casale Brunet Simone, Schuepbach Thierry, Guex Nicolas, Iseli Christian, Bridge Alan, Kuznetsov Dmitry, Sigrist Christian, Lemercier Philippe, Xenarios Ioannis, Bezati Endri, 2018/08. 2018 28th International Conference on Field Programmable Logic and Applications (FPL).
[DOI][serval:BIB_31D324852D5A]
The Effect of Balancing Selection on Population Differentiation: A Study with HLA Genes.
Brandt DYC, César J., Goudet J., Meyer D., 2018/07/31. G3, 8 (8) pp. 2805-2815. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6EA8F8E383C5]
Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines.
Scepanovic P., Alanio C., Hammer C., Hodel F., Bergstedt J., Patin E., Thorball C.W., Chaturvedi N., Charbit B., Abel L. et al., 2018/07/27. Genome medicine, 10 (1) p. 59. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_44965C59FD25]
 
Genomic organization underlying deletional robustness in bacterial metabolic systems.
Hosseini S.R., Wagner A., 2018/07/03. Proceedings of the National Academy of Sciences of the United States of America, 115 (27) pp. 7075-7080. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_69EA3494081A]
 
Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delay.
Ansar M., Riazuddin S., Sarwar M.T., Makrythanasis P., Paracha S.A., Iqbal Z., Khan J., Assir M.Z., Hussain M., Razzaq A. et al., 2018/07. Genetics in medicine, 20 (7) pp. 778-784. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D7BE05010980]
 
Pan-SRC kinase inhibition blocks B-cell receptor oncogenic signaling in non-Hodgkin lymphoma.
Battistello E., Katanayeva N., Dheilly E., Tavernari D., Donaldson M.C., Bonsignore L., Thome M., Christie A.L., Murakami M.A., Michielin O. et al., 2018/05/24. Blood, 131 (21) pp. 2345-2356. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_628039C698E5]
The C-terminal extension landscape of naturally presented HLA-I ligands.
Guillaume P., Picaud S., Baumgaertner P., Montandon N., Schmidt J., Speiser D.E., Coukos G., Bassani-Sternberg M., Filippakopoulos P., Gfeller D., 2018/05/15. Proceedings of the National Academy of Sciences of the United States of America, 115 (20) pp. 5083-5088. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9B915FD9A9BB]
Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.
Dib L., Salamin N., Gfeller D., 2018/05. PLoS computational biology, 14 (5) pp. e1006188. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C9940E7E30A3]
 
Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.
Turcot V., Lu Y., Highland H.M., Schurmann C., Justice A.E., Fine R.S., Bradfield J.P., Esko T., Giri A., Graff M. et al., 2018/05..
[DOI][WoS][Pmid][serval:BIB_1690AB3E74A9]
Impact of the tree prior on estimating clock rates during epidemic outbreaks.
Möller S., du Plessis L., Stadler T., 2018/04/17. Proceedings of the National Academy of Sciences of the United States of America, 115 (16) pp. 4200-4205. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DF510A0934A0]
 
Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer
Tanyi Janos L., Bobisse Sara, Ophir Eran, Tuyaerts Sandra, Roberti Annalisa, Genolet Raphael, Baumgartner Petra, Stevenson Brian J., Iseli Christian, Dangaj Denarda et al., 2018/04/11. Science Translational Medicine, 10 (436) pp. eaao5931.
[DOI][WoS][Pmid][serval:BIB_641968BB356B]
 
Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer.
Tanyi J.L., Bobisse S., Ophir E., Tuyaerts S., Roberti A., Genolet R., Baumgartner P., Stevenson B.J., Iseli C., Dangaj D. et al., 2018/04/11. Science translational medicine, 10 (436) pp. NA. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CBC10D090AEF]
RNA-mediated gene regulation is less evolvable than transcriptional regulation.
Payne J.L., Khalid F., Wagner A., 2018/04/10. Proceedings of the National Academy of Sciences of the United States of America, 115 (15) pp. E3481-E3490. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_57E4C3B8E05C]
Oncogenic Signaling Pathways in The Cancer Genome Atlas.
Sanchez-Vega F., Mina M., Armenia J., Chatila W.K., Luna A., La K.C., Dimitriadoy S., Liu D.L., Kantheti H.S., Saghafinia S. et al., 2018/04/05. Cell, 173 (2) pp. 321-337.e10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_03A6331C652C]
Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures.
Cassatella D., Howard S.R., Acierno J.S., Xu C., Papadakis G.E., Santoni F.A., Dwyer A.A., Santini S., Sykiotis G.P., Chambion C. et al., 2018/04. European journal of endocrinology, 178 (4) pp. 377-388. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_92D278111021]
The DNA methylome of DDR genes and benefit from RT or TMZ in IDH mutant low-grade glioma treated in EORTC 22033.
Bady P., Kurscheid S., Delorenzi M., Gorlia T., van den Bent M.J., Hoang-Xuan K., Vauléon É., Gijtenbeek A., Enting R., Thiessen B. et al., 2018/04. Acta neuropathologica, 135 (4) pp. 601-615. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_424F6D3B26FB]
Sensitive and frequent identification of high avidity neo-epitope specific CD8 + T cells in immunotherapy-naive ovarian cancer.
Bobisse S., Genolet R., Roberti A., Tanyi J.L., Racle J., Stevenson B.J., Iseli C., Michel A., Le Bitoux M.A., Guillaume P. et al., 2018/03/15. Nature communications, 9 (1) p. 1092. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_10AE95ADCEE8]
Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children.
Cordey S., Hartley M.A., Keitel K., Laubscher F., Brito F., Junier T., Kagoro F., Samaka J., Masimba J., Said Z. et al., 2018/03/14. Emerging microbes & infections, 7 (1) p. 27. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C49470704598]
Improving genetic prediction by leveraging genetic correlations among human diseases and traits.
Maier R.M., Zhu Z., Lee S.H., Trzaskowski M., Ruderfer D.M., Stahl E.A., Ripke S., Wray N.R., Yang J., Visscher P.M. et al., 2018/03/07. Nature communications, 9 (1) p. 989. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4C41F42457D9]
Identification of placental nutrient transporters associated with intrauterine growth restriction and pre-eclampsia.
Huang X., Anderle P., Hostettler L., Baumann M.U., Surbek D.V., Ontsouka E.C., Albrecht C., 2018/03/02. BMC genomics, 19 (1) p. 173. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9891316EC2D2]
Biallelic variants in KIF14 cause intellectual disability with microcephaly.
Makrythanasis P., Maroofian R., Stray-Pedersen A., Musaev D., Zaki M.S., Mahmoud I.G., Selim L., Elbadawy A., Jhangiani S.N., Coban Akdemir Z.H. et al., 2018/03. European journal of human genetics, 26 (3) pp. 330-339. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C00D344B1BA2]
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.
Waterhouse R.M., Seppey M., Simão F.A., Manni M., Ioannidis P., Klioutchnikov G., Kriventseva E.V., Zdobnov E.M., 2018/03/01. Molecular biology and evolution, 35 (3) pp. 543-548. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2A4C7F8DA305]
 
Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K., Echchiki A., Roux J., Šikic M., 2018/03/01. Bioinformatics, 34 (5) pp. 748-754. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2AD9D09B9A6F]
High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome.
Chong C., Marino F., Pak H., Racle J., Daniel R.T., Müller M., Gfeller D., Coukos G., Bassani-Sternberg M., 2018/03. Molecular & cellular proteomics, 17 (3) pp. 533-548. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A056F0253744]
 
Sex-antagonistic genes, XY recombination and feminized Y chromosomes.
Cavoto E., Neuenschwander S., Goudet J., Perrin N., 2018/03. Journal of evolutionary biology, 31 (3) pp. 416-427. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F6C923B3D9F4]
Systems biology of the IMIDIA biobank from organ donors and pancreatectomised patients defines a novel transcriptomic signature of islets from individuals with type 2 diabetes.
Solimena M., Schulte A.M., Marselli L., Ehehalt F., Richter D., Kleeberg M., Mziaut H., Knoch K.P., Parnis J., Bugliani M. et al., 2018/03. Diabetologia, 61 (3) pp. 641-657. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B55984D6D1A]
Clownfishes evolution below and above the species level.
Rolland J., Silvestro D., Litsios G., Faye L., Salamin N., 2018/02/28. Proceedings. Biological sciences, 285 (1873) pp. NA. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_341335ED4810]
High capacity in G protein-coupled receptor signaling.
Keshelava A., Solis G.P., Hersch M., Koval A., Kryuchkov M., Bergmann S., Katanaev V.L., 2018/02/28. Nature communications, 9 (1) p. 876. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B5E271BB510]
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes.
Racko D., Benedetti F., Dorier J., Stasiak A., 2018/02/28. Nucleic acids research, 46 (4) pp. 1648-1660. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DFCB79821A40]
Functional and Expression Analyses of the <i>Pneumocystis MAT</i> Genes Suggest Obligate Sexuality through Primary Homothallism within Host Lungs.
Richard S., Almeida JMGCF, Cissé O.H., Luraschi A., Nielsen O., Pagni M., Hauser P.M., 2018/02/20. mBio, 9 (1) pp. NA. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F34716C3472E]
 
Educational Tools to Introduce Computer-Aided Drug Design to Students and to the Public at Large.
Daina A., Blatter M.C., Gerritsen V.B., Zoete V., 2018/02/01. Chimia, 72 (1) pp. 55-61. Peer-reviewed.
[DOI][Pmid][serval:BIB_EB3DE0B6C325]
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
Kühnert D., Kouyos R., Shirreff G., Pečerska J., Scherrer A.U., Böni J., Yerly S., Klimkait T., Aubert V., Günthard H.F. et al., 2018/02. PLoS pathogens, 14 (2) pp. e1006895. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6E944D8BBF5C]
T cell receptor alpha variable 12-2 bias in the immunodominant response to Yellow fever virus.
Bovay A., Zoete V., Dolton G., Bulek A.M., Cole D.K., Rizkallah P.J., Fuller A., Beck K., Michielin O., Speiser D.E. et al., 2018/02. European journal of immunology, 48 (2) pp. 258-272. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_47E01B2BD815]
 
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans.
Moreno-Mayar J.V., Potter B.A., Vinner L., Steinrücken M., Rasmussen S., Terhorst J., Kamm J.A., Albrechtsen A., Malaspinas A.S., Sikora M. et al., 2018/01/11. Nature, 553 (7687) pp. 203-207. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A71C9F6D2CEC]
KIAA1109 Variants Are Associated with a Severe Disorder of Brain Development and Arthrogryposis.
Gueneau L., Fish R.J., Shamseldin H.E., Voisin N., Tran Mau-Them F., Preiksaitiene E., Monroe G.R., Lai A., Putoux A., Allias F. et al., 2018/01/04. American journal of human genetics, 102 (1) pp. 116-132. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D335250BB897]
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff A.M., Glover N.M., Train C.M., Kaleb K., Warwick Vesztrocy A., Dylus D., de Farias T.M., Zile K., Stevenson C., Long J. et al., 2018/01/04. Nucleic acids research, 46 (D1) pp. D477-D485. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FC0F04688D1D]
A historical legacy of antibiotic utilization on bacterial seed banks in sediments.
Madueño L., Paul C., Junier T., Bayrychenko Z., Filippidou S., Beck K., Greub G., Bürgmann H., Junier P., 2018. PeerJ, 6 pp. e4197. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABD7157C5495]
A population genomics approach shows widespread geographical distribution of cryptic genomic forms of the symbiotic fungus Rhizophagus irregularis.
Savary R., Masclaux F.G., Wyss T., Droh G., Cruz Corella J., Machado A.P., Morton J.B., Sanders I.R., 2018. ISME Journal, 12 (1) pp. 17-30. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EC41D02ADC3C]
A public antibody lineage that potently inhibits malaria infection through dual binding to the circumsporozoite protein.
Tan J., Sack B.K., Oyen D., Zenklusen I., Piccoli L., Barbieri S., Foglierini M., Fregni C.S., Marcandalli J., Jongo S. et al., 2018. Nature Medicine, 24 (4) pp. 401-407. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DC5884589CC7]
 
A rule-based methodology to extract building model views
de Farias T.M., Roxin A., Nicolle C., 2018. Automation in Construction, 92 pp. 214-229. Peer-reviewed.
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An interactive computer lab of the galvanic cell for students in biochemistry.
Ahlstrand E., Buetti-Dinh A., Friedman R., 2018. Biochemistry and Molecular Biology Education, 46 (1) pp. 58-65. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_81C6821AECD7]
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests.
Komljenovic A., Roux J., Wollbrett J., Robinson-Rechavi M., Bastian F.B., 2018. F1000Research, 5 p. 2748. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_0AA1ED033ECE]
Closing the gap between palaeontological and neontological speciation and extinction rate estimates.
Silvestro D., Warnock RCM, Gavryushkina A., Stadler T., 2018. Nature Communications, 9 (1) p. 5237. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2AEE50A84161]
Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses.
Kanitz R., Guillot E.G., Antoniazza S., Neuenschwander S., Goudet J., 2018. PLoS One, 13 (2) pp. e0192460. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_77ADA568BCF2]
Computational prediction of inter-species relationships through omics data analysis and machine learning.
Leite DMC, Brochet X., Resch G., Que Y.A., Neves A., Peña-Reyes C., 2018. BMC Bioinformatics, 19 (Suppl 14) p. 420. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_41B8FD3269F6]
Conceptual and empirical advances in Neotropical biodiversity research.
Antonelli A., Ariza M., Albert J., Andermann T., Azevedo J., Bacon C., Faurby S., Guedes T., Hoorn C., Lohmann L.G. et al., 2018. PeerJ, 6 pp. e5644. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_24EE06DC135E]
 
Copy Number Variation.
Macé A., Kutalik Z., Valsesia A., 2018. Methods in molecular biology, 1793 pp. 231-258. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B59860FB497A]
Decline of genetic diversity in ancient domestic stallions in Europe.
Wutke S., Sandoval-Castellanos E., Benecke N., Döhle H.J., Friederich S., Gonzalez J., Hofreiter M., Lõugas L., Magnell O., Malaspinas A.S. et al., 2018. Science Advances, 4 (4) pp. eaap9691. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BD64E7EF0115]
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.
Paul C., Bayrychenko Z., Junier T., Filippidou S., Beck K., Bueche M., Greub G., Bürgmann H., Junier P., 2018. PeerJ, 6 pp. e4989. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_408A948312E3]
First draft genome of an iconic clownfish species (Amphiprion frenatus).
Marcionetti A., Rossier V., Bertrand JAM, Litsios G., Salamin N., 2018. Molecular Ecology Resources, 18 (5) pp. 1092-1101. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DAA95EEF7AB3]
Fundamental and realized feeding niche breadths of sexual and asexual stick insects.
Larose C., Parker D.J., Schwander T., 2018. Proceedings of the Royal Society. B Biological sciences, 285 (1892) p. 20181805. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_69B6EEF0F15E]
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Forslund K., Pereira C., Capella-Gutierrez S., Sousa da Silva A., Altenhoff A., Huerta-Cepas J., Muffato M., Patricio M., Vandepoele K., Ebersberger I. et al., 2018. Bioinformatics, 34 (2) pp. 323-329. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D31584E0556C]
 
Intellectual developmental disorder with cardiac arrhythmia syndrome in a child with compound heterozygous GNB5 variants.
Vernon H., Cohen J., De Nittis P., Fatemi A., McClellan R., Goldstein A., Malerba N., Guex N., Reymond A., Merla G., 2018. Clinical Genetics, 93 (6) pp. 1254-1256. Peer-reviewed.
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Modulation of the peripheral blood transcriptome by the ingestion of probiotic yoghurt and acidified milk in healthy, young men.
Burton K.J., Pimentel G., Zangger N., Vionnet N., Drai J., McTernan P.G., Pralong F.P., Delorenzi M., Vergères G., 2018. PloS one, 13 (2) pp. e0192947. Peer-reviewed.
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Periodic Motion of Sedimenting Flexible Knots
Gruziel M., Thyagarajan K., Dietler G., Stasiak A., Ekiel-Jeżewska M.L., Szymczak P., 2018. Physical Review Letters, 121 (12) p. 127801. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_86C1997A4259]
Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour.
Romiguier J., Rolland J., Morandin C., Keller L., 2018. BMC Evolutionary Biology, 18 (1) p. 40. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CD99EF06FCA7]
 
Predation drives local adaptation of phenotypic plasticity.
Reger J., Lind M.I., Robinson M.R., Beckerman A.P., 2018/01. Nature ecology & evolution, 2 (1) pp. 100-107. Peer-reviewed.
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Predicting Antigen Presentation-What Could We Learn From a Million Peptides?
Gfeller D., Bassani-Sternberg M., 2018. Frontiers in immunology, 9 p. 1716. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DD4188679B4B]
 
Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel.
Dabrowski-Tumanski P., Piejko M., Niewieczerzal S., Stasiak A., Sulkowska J.I., 2018. The journal of Physical Chemistry. B, 122 (49) pp. 11616-11625. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5A109FDEE6B9]
Response to MEK inhibition with trametinib and tyrosine kinase inhibition with imatinib in multifocal histiocytic sarcoma.
Voruz S., Cairoli A., Naveiras O., de Leval L., Missiaglia E., Homicsko K., Michielin O., Blum S., 2018/01. Haematologica, 103 (1) pp. e39-e41. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_12A8F7D8B626]
ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.
Mangul S., Yang H.T., Strauli N., Gruhl F., Porath H.T., Hsieh K., Chen L., Daley T., Christenson S., Wesolowska-Andersen A. et al., 2018. Genome Biology, 19 (1) p. 36. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_66C286C8031F]
Sex chromosome turnovers and genetic drift: a simulation study.
Saunders P.A., Neuenschwander S., Perrin N., 2018. Journal of Evolutionary Biology, 31 (9) pp. 1413-1419. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81445E80C6C9]
Short-lived AUF1 p42-binding mRNAs of RANKL and BCL6 have two distinct instability elements each.
Dogar A.M., Pauchard-Batschulat R., Grisoni-Neupert B., Richman L., Paillusson A., Pradervand S., Hagenbüchle O., Ambrosini G., Schmid C.D., Bucher P. et al., 2018. PloS one, 13 (11) pp. e0206823. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EAC40B65AC8E]
Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection.
Popadin K., Peischl S., Garieri M., Sailani M.R., Letourneau A., Santoni F., Lukowski S.W., Bazykin G.A., Nikolaev S., Meyer D. et al., 2018. GenomeRresearch, 28 (1) pp. 1-10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E72B848928F3]
Submit a Topic Page to PLOS Computational Biology and Wikipedia.
Mietchen D., Wodak S., Wasik S., Szostak N., Dessimoz C., 2018. PLoS Computational Biology, 14 (5) pp. e1006137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_44F587EDD0AF]
 
The prehistoric peopling of Southeast Asia.
McColl H., Racimo F., Vinner L., Demeter F., Gakuhari T., Moreno-Mayar J.V., van Driem G., Gram Wilken U., Seguin-Orlando A., de la Fuente Castro C. et al., 2018. Science, 361 (6397) pp. 88-92. Peer-reviewed.
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The Rocky Mountains as a dispersal barrier between barn owl (Tyto alba ) populations in North America
Machado A.P., Clément L., Uva V., Goudet J., Roulin A., 2018. Journal of Biogeography, 45 (6) pp. 1288-1300. Peer-reviewed.
[DOI][WoS][serval:BIB_C3FDE1E38C4C]
Variation in allele frequencies at the bg112 locus reveals unequal inheritance of nuclei in a dikaryotic isolate of the fungus Rhizophagus irregularis.
Masclaux F.G., Wyss T., Mateus-Gonzalez I.D., Aletti C., Sanders I.R., 2018. Mycorrhiza, 28 (4) pp. 369-377. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A47CB11BB965]
2017
 
Vaccination of dogs in an African city interrupts rabies transmission and reduces human exposure.
Zinsstag J., Lechenne M., Laager M., Mindekem R., Naïssengar S., Oussiguéré A., Bidjeh K., Rives G., Tessier J., Madjaninan S. et al., 2017/12/20. Science translational medicine, 9 (421) pp. eaaf6984. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_617484B3F2CC]
Ubiquitin Specific Peptidase 15 (USP15) suppresses glioblastoma cell growth via stabilization of HECTD1 E3 ligase attenuating WNT pathway activity.
Oikonomaki M., Bady P., Hegi M.E., 2017/12/15. Oncotarget, 8 (66) pp. 110490-110502. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7C8A78A053FF]
Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer.
Faget J., Groeneveld S., Boivin G., Sankar M., Zangger N., Garcia M., Guex N., Zlobec I., Steiner L., Piersigilli A. et al., 2017/12/12. Cell reports, 21 (11) pp. 3190-3204. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1781FEB17DE0]
Kinship structures create persistent channels for language transmission.
Lansing J.S., Abundo C., Jacobs G.S., Guillot E.G., Thurner S., Downey S.S., Chew L.Y., Bhattacharya T., Chung N.N., Sudoyo H. et al., 2017/12/05. Proceedings of the National Academy of Sciences of the United States of America, 114 (49) pp. 12910-12915. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_50291FE1868B]
Selection on the Major Color Gene Melanocortin-1-Receptor Shaped the Evolution of the Melanocortin System Genes.
Dib L., San-Jose L.M., Ducrest A.L., Salamin N., Roulin A., 2017/12/05. International journal of molecular sciences, 18 (12) pp. NA. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_05CA0CC7D793]
Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage.
Marin R., Cortez D., Lamanna F., Pradeepa M.M., Leushkin E., Julien P., Liechti A., Halbert J., Brüning T., Mössinger K. et al., 2017/12. Genome research, 27 (12) pp. 1974-1987. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B08210A7372]
Leveraging logical rules for efficacious representation of large orthology datasets
Mendes de Farias Tarcisio, Chiba Hirokazu, Fernández-Breis Jesualdo T. (eds.), 2017/12/01..
[URN][serval:BIB_8D8E82340A71]
 
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_66296D0251EE]
Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution.
McGranahan N., Rosenthal R., Hiley C.T., Rowan A.J., Watkins TBK, Wilson G.A., Birkbak N.J., Veeriah S., Van Loo P., Herrero J. et al., 2017/11/30. Cell, 171 (6) pp. 1259-1271.e11. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FAC182E4CFA0]
Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data.
Racle J., de Jonge K., Baumgaertner P., Speiser D.E., Gfeller D., 2017/11/13. eLife, 6 pp. 1-25. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D4CC1AFA4588]
Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus <i>Pneumocystis jirovecii</i>.
Schmid-Siegert E., Richard S., Luraschi A., Mühlethaler K., Pagni M., Hauser P.M., 2017/11/07. mBio, 8 (6) pp. e01470-17 . Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_463F4AEF8751]
Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster.
Maitre D., Selmoni O.M., Uppal A., Marques da Cunha L., Wilkins LGE, Roux J., Mobley K.B., Castro I., Knörr S., Robinson-Rechavi M. et al., 2017/11/03. Scientific reports, 7 (1) p. 15024. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6A409506084]
Identification of islet-enriched long non-coding RNAs contributing to β-cell failure in type 2 diabetes.
Motterle A., Gattesco S., Peyot M.L., Esguerra JLS, Gomez-Ruiz A., Laybutt D.R., Gilon P., Burdet F., Ibberson M., Eliasson L. et al., 2017/11. Molecular metabolism, 6 (11) pp. 1407-1418. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D238F81A7442]
Mutant <i>CTNNB1</i> and histological heterogeneity define metabolic subtypes of hepatoblastoma.
Crippa S., Ancey P.B., Vazquez J., Angelino P., Rougemont A.L., Guettier C., Zoete V., Delorenzi M., Michielin O., Meylan E., 2017/11. EMBO molecular medicine, 9 (11) pp. 1589-1604. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ABF970C7CD17]
Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.
Joshi P.K., Pirastu N., Kentistou K.A., Fischer K., Hofer E., Schraut K.E., Clark D.W., Nutile T., Barnes CLK, Timmers PRHJ et al., 2017/10/13. Nature communications, 8 (1) p. 910. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AA3220915510]
RIP4 inhibits STAT3 signaling to sustain lung adenocarcinoma differentiation.
Kopparam J., Chiffelle J., Angelino P., Piersigilli A., Zangger N., Delorenzi M., Meylan E., 2017/10. Cell death and differentiation, 24 (10) pp. 1761-1771. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9C34911CB2F4]
CNV-association meta-analysis in 191,161 European adults reveals new loci associated with anthropometric traits.
Macé A., Tuke M.A., Deelen P., Kristiansson K., Mattsson H., Nõukas M., Sapkota Y., Schick U., Porcu E., Rüeger S. et al., 2017/09/29. Nature communications, 8 (1) p. 744. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_220FBAC01D96]
Tumour-derived PGD2 and NKp30-B7H6 engagement drives an immunosuppressive ILC2-MDSC axis.
Trabanelli S., Chevalier M.F., Martinez-Usatorre A., Gomez-Cadena A., Salomé B., Lecciso M., Salvestrini V., Verdeil G., Racle J., Papayannidis C. et al., 2017/09/19. Nature communications, 8 (1) p. 593. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_40D92F523196]
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree
Boeckmann Brigitte, Dylus David, Moretti Sebastien, Altenhoff Adrian, Train Clement-Marie, Kriventseva Evgenia, Bougueleret Lydie, Xenarios Ioannis, Privman Eyal, Gabaldon Toni et al., 2017/09/05..
[URN][DOI][serval:BIB_7579ACF1CAEA]
The genomic landscape of human cellular circadian variation points to a novel role for the signalosome.
Gaspar L., Howald C., Popadin K., Maier B., Mauvoisin D., Moriggi E., Gutierrez-Arcelus M., Falconnet E., Borel C., Kunz D. et al., 2017/09/04. eLife, 6 pp. 1-23. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E8E1A136A4E5]
A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.
Mack S., Coassin S., Rueedi R., Yousri N.A., Seppälä I., Gieger C., Schönherr S., Forer L., Erhart G., Marques-Vidal P. et al., 2017/09. Journal of lipid research, 58 (9) pp. 1834-1844. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5A3A28A604C2]
 
Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking
Salvador Capella-Gutierrez, Diana de la Iglesia, Juergen Haas, Analia Lourenco, José María Fernández, Dmitry Repchevsky, Christophe Dessimoz, Torsten Schwede, Cedric Notredame, Josep Ll Gelpi et al., 2017/08/31..
[DOI][serval:BIB_80A8E1F89C47]
Comparative Genomics of Two Sequential <i>Candida glabrata</i> Clinical Isolates.
Vale-Silva L., Beaudoing E., Tran VDT, Sanglard D., 2017/08/07. G3, 7 (8) pp. 2413-2426. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CDBF97BBE25A]
 
MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications.
Martín-Campos T., Mylonas R., Masselot A., Waridel P., Petricevic T., Xenarios I., Quadroni M., 2017/08/04. Journal of proteome research, 16 (8) pp. 3092-3101. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FEF11715AA73]
Interaction between the FTO gene, body mass index and depression: meta-analysis of 13701 individuals.
Rivera M., Locke A.E., Corre T., Czamara D., Wolf C., Ching-Lopez A., Milaneschi Y., Kloiber S., Cohen-Woods S., Rucker J. et al., 2017/08. The British journal of psychiatry, 211 (2) pp. 70-76. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8FEC91DF2193]
Bayesian association scan reveals loci associated with human lifespan and linked biomarkers.
McDaid A.F., Joshi P.K., Porcu E., Komljenovic A., Li H., Sorrentino V., Litovchenko M., Bevers RPJ, Rüeger S., Reymond A. et al., 2017/07/27. Nature communications, 8 p. 15842. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C06E0694F6CC]
Studies of global and local entanglements of individual protein chains using the concept of knotoids.
Goundaroulis D., Dorier J., Benedetti F., Stasiak A., 2017/07/24. Scientific reports, 7 (1) p. 6309. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D27975D9E8ED]
The Transcription Factor Tcf1 Contributes to Normal NK Cell Development and Function by Limiting the Expression of Granzymes.
Jeevan-Raj B., Gehrig J., Charmoy M., Chennupati V., Grandclément C., Angelino P., Delorenzi M., Held W., 2017/07/18. Cell reports, 20 (3) pp. 613-626. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_87F6877665CF]
Local auxin production underlies a spatially restricted neighbor-detection response in <i>Arabidopsis</i>.
Michaud O., Fiorucci A.S., Xenarios I., Fankhauser C., 2017/07/11. Proceedings of the National Academy of Sciences of the United States of America, 114 (28) pp. 7444-7449. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E653216BF122]
 
Characterisation of multifocal breast cancer using the 70-gene signature in clinical low-risk patients enrolled in the EORTC 10041/BIG 03-04 MINDACT trial.
Aalders K.C., Kuijer A., Straver M.E., Slaets L., Litiere S., Viale G., Van't Veer L.J., Glas A.M., Delorenzi M., van Dalen T. et al., 2017/07. European journal of cancer, 79 pp. 98-105. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_076642AE6AC4]
Identification and Functional Ascertainment of the Pneumocystis jirovecii Potential Drug Targets Gsc1 and Kre6 Involved in Glucan Synthesis.
Luraschi A., Cissé O.H., Pagni M., Hauser P.M., 2017/07. The Journal of eukaryotic microbiology, 64 (4) pp. 481-490. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_03F06764D981]
 
Identification of innate lymphoid cells in single-cell RNA-Seq data.
Suffiotti M., Carmona S.J., Jandus C., Gfeller D., 2017/07. Immunogenetics, 69 (7) pp. 439-450. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_746D02A9A722]
Combining talimogene laherparepvec with immunotherapies in melanoma and other solid tumors.
Dummer R., Hoeller C., Gruter I.P., Michielin O., 2017/06. Cancer immunology, immunotherapy : CII, 66 (6) pp. 683-695. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8B8CACE7B591]
Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.
Mange F., Praz V., Migliavacca E., Willis I.M., Schütz F., Hernandez N., CycliX Consortium, 2017/06. Genome research, 27 (6) pp. 973-984. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_240C54C8CA8A]
 
LBA-005VELOUR trial biomarkers update: Impact of RAS, BRAF, and sidedness on aflibercept activity.
Wirapati P., Pomella V., Vandenbosch B., Kerr P., Maiello E., Jeffery Grahame M., Razvan-Ovidiu D C., Karthaus M., John A B., Anca C M. et al., 2017/06/01. Annals of oncology, 28 (suppl_3) pp. 151, 152. Peer-reviewed.
[DOI][Pmid][serval:BIB_BA91EA4F3982]
 
Tracking the Evolution of Non-Small-Cell Lung Cancer.
Jamal-Hanjani M., Wilson G.A., McGranahan N., Birkbak N.J., Watkins TBK, Veeriah S., Shafi S., Johnson D.H., Mitter R., Rosenthal R. et al., 2017/06/01. The New England journal of medicine, 376 (22) pp. 2109-2121. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B5C92AE7BF35]
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
Abbosh Christopher, Birkbak Nicolai J., Wilson Gareth A., Jamal-Hanjani Mariam, Constantin Tudor, Salari Raheleh, Le Quesne John, Moore David A., Veeriah Selvaraju, Rosenthal Rachel et al., 2017/05/25. Nature, 545 (7655) pp. 446-451.
[URN][DOI][WoS][Pmid][serval:BIB_379A4A21AFB4]
 
The pathogen-related yeast protein Pry1, a member of the CAP protein superfamily, is a fatty acid-binding protein.
Darwiche R., Mène-Saffrané L., Gfeller D., Asojo O.A., Schneiter R., 2017/05/19. The Journal of biological chemistry, 292 (20) pp. 8304-8314. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9BD5446EEF7B]
 
Increased ex vivo antigen presentation profile of B cells in multiple sclerosis.
Mathias A., Perriard G., Canales M., Soneson C., Delorenzi M., Schluep M., Du Pasquier R.A., 2017/05. Multiple sclerosis, 23 (6) pp. 802-809. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EAF70FDD4B1B]
 
Molecular ecology studies of species radiations: current research gaps, opportunities and challenges.
de la Harpe M., Paris M., Karger D.N., Rolland J., Kessler M., Salamin N., Lexer C., 2017/05. Molecular ecology, 26 (10) pp. 2608-2622. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_795ED44FB832]
Prediction of overall survival in stage II and III colon cancer beyond TNM system: a retrospective, pooled biomarker study.
Dienstmann R., Mason M.J., Sinicrope F.A., Phipps A.I., Tejpar S., Nesbakken A., Danielsen S.A., Sveen A., Buchanan D.D., Clendenning M. et al., 2017/05/01. Annals of oncology, 28 (5) pp. 1023-1031. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8E7F51316719]
 
Broad and Conserved Immune Regulation by Genetically Heterogeneous Melanoma Cells.
Neubert N.J., Tillé L., Barras D., Soneson C., Baumgaertner P., Rimoldi D., Gfeller D., Delorenzi M., Fuertes Marraco S.A., Speiser D.E., 2017/04/01. Cancer research, 77 (7) pp. 1623-1636. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4F63C0C97A59]
Gene-obesogenic environment interactions in the UK Biobank study.
Tyrrell J., Wood A.R., Ames R.M., Yaghootkar H., Beaumont R.N., Jones S.E., Tuke M.A., Ruth K.S., Freathy R.M., Davey Smith G. et al., 2017/04/01. International journal of epidemiology, 46 (2) pp. 559-575. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C13C156D5AB5]
Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.
Warren H.R., Evangelou E., Cabrera C.P., Gao H., Ren M., Mifsud B., Ntalla I., Surendran P., Liu C., Cook J.P. et al., 2017/04. Nature genetics, 49 (3) pp. 403-415. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3DE32D5D8A36]
Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.
Graff M., Scott R.A., Justice A.E., Young K.L., Feitosa M.F., Barata L., Winkler T.W., Chu A.Y., Mahajan A., Hadley D. et al., 2017/04. PLoS genetics, 13 (4) pp. e1006528. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0CBE3B529A2]
Integrative clinicopathological and molecular analyses of angioimmunoblastic T-cell lymphoma and other nodal lymphomas of follicular helper T-cell origin.
Dobay M.P., Lemonnier F., Missiaglia E., Bastard C., Vallois D., Jais J.P., Scourzic L., Dupuy A., Fataccioli V., Pujals A. et al., 2017/04. Haematologica, 102 (4) pp. e148-e151. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_55B41E65EEB9]
 
Linking genomics and population genetics with R.
Paradis E., Gosselin T., Goudet J., Jombart T., Schliep K., 2017/04. Molecular ecology resources, 17 (1) pp. 54-66.
[DOI][Pmid][serval:BIB_90179BE9C8A4]
Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role for <i>Elovl2</i> in glucose-induced insulin secretion.
Cruciani-Guglielmacci C., Bellini L., Denom J., Oshima M., Fernandez N., Normandie-Levi P., Berney X.P., Kassis N., Rouch C., Dairou J. et al., 2017/04. Molecular metabolism, 6 (4) pp. 340-351. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B44EFB14BA9]
Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.
Heilmann-Heimbach S., Herold C., Hochfeld L.M., Hillmer A.M., Nyholt D.R., Hecker J., Javed A., Chew E.G., Pechlivanis S., Drichel D. et al., 2017/03/08. Nature communications, 8 p. 14694. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_718B98CBA9DB]
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules.
Daina A., Michielin O., Zoete V., 2017/03/03. Scientific reports, 7 p. 42717. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8806AF61D608]
Phylodynamics on local sexual contact networks.
Rasmussen D.A., Kouyos R., Günthard H.F., Stadler T., 2017/03. PLoS computational biology, 13 (3) pp. e1005448. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C51F01784241]
Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types.
Carmona S.J., Teichmann S.A., Ferreira L., Macaulay I.C., Stubbington M.J., Cvejic A., Gfeller D., 2017/03. Genome research, 27 (3) pp. 451-461. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9293ADF6E6AC]
Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis.
Gschwind A.R., Singh A., Certa U., Reymond A., Heckel T., 2017/02/10. BMC genomics, 18 (1) p. 144. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A87ECF2238E9]
Rare and low-frequency coding variants alter human adult height.
Marouli E., Graff M., Medina-Gomez C., Lo K.S., Wood A.R., Kjaer T.R., Fine R.S., Lu Y., Schurmann C., Highland H.M. et al., 2017/02/09. Nature, 542 (7640) pp. 186-190. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CB04B9543EC2]
 
Evolution of Acid-Sensing Olfactory Circuits in Drosophilids.
Prieto-Godino L.L., Rytz R., Cruchet S., Bargeton B., Abuin L., Silbering A.F., Ruta V., Dal Peraro M., Benton R., 2017/02/08. Neuron, 93 (3) pp. 661-676.e6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_91CF6E8DDDD6]
Cell-free DNA testing of an extended range of chromosomal anomalies: clinical experience with 6,388 consecutive cases
Pescia Graziano, Guex Nicolas, Iseli Christian, Brennan Liam, Osteras Magne, Xenarios Ioannis, Farinelli Laurent, Conrad Bernard, 2017/02. Genetics in Medicine, 19 (2) pp. 169-175.
[URN][DOI][WoS][Pmid][serval:BIB_7424A736A2C2]
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.
Jeffares D.C., Jolly C., Hoti M., Speed D., Shaw L., Rallis C., Balloux F., Dessimoz C., Bähler J., Sedlazeck F.J., 2017/01/24. Nature communications, 8 p. 14061. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B9096E627F3]
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