Microbiology

Publications | Phd and Masters theses

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2334 publications

... | 2018 | 2017 | 2016 | ...
Culture-independent genome sequencing of Coxiella burnetii from a native heart valve of a Tunisian patient with severe infective endocarditis.
Delaloye J., Pillonel T., Smaoui M., Znazen A., Abid L., Greub G., 2018/01. New microbes and new infections, 21 pp. 31-35. Peer-reviewed.
Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.
Seth-Smith HMB, Imkamp F., Tagini F., Cuénod A., Hömke R., Jahn K., Tschacher A., Grendelmeier P., Bättig V., Erb S. et al., 2018. Frontiers in microbiology, 9 p. 3184. Peer-reviewed.
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.
Paul C., Bayrychenko Z., Junier T., Filippidou S., Beck K., Bueche M., Greub G., Bürgmann H., Junier P., 2018. PeerJ, 6 pp. e4989. Peer-reviewed.
Distinct Genomic Features Characterize Two Clades of <i>Corynebacterium diphtheriae</i>: Proposal of <i>Corynebacterium diphtheriae</i> Subsp. <i>diphtheriae</i> Subsp. nov. and <i>Corynebacterium diphtheriae</i> Subsp. <i>lausannense</i> Subsp. nov.
Tagini F., Pillonel T., Croxatto A., Bertelli C., Koutsokera A., Lovis A., Greub G., 2018. Frontiers in microbiology, 9 p. 1743. Peer-reviewed.
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.
Pillonel T., Bertelli C., Greub G., 2018. Frontiers in microbiology, 9 p. 79. Peer-reviewed.
 
Epidemiology of sexually transmitted infections among female sex workers in Switzerland : a local exploratory cross-sectional study
Bondolfi C., Vu F., Cavassini M., D'Acremont V., Greub G., Jaton K., Masserey E., Pongelli S., Bouche L., Ngarambe C. et al., 2018., 1st World Congress on Migration, Ethnicity, Race and Health, Edinburgh, 17-19 May 2018 p. 158 dans European Journal of Public Health.
ESCCAR international congress on Rickettsiae and other intracellular bacteria.
Fournier P.E., Kebbi-Beghdadi C., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 392-400. Peer-reviewed.
First case of Candida auris in Switzerland: discussion about preventive strategies.
Riat A., Neofytos D., Coste A., Harbarth S., Bizzini A., Grandbastien B., Pugin J., Lamoth F., 2018. Swiss medical weekly, 148 pp. w14622. Peer-reviewed.
How to manage Pseudomonas aeruginosa infections.
Bassetti M., Vena A., Croxatto A., Righi E., Guery B., 2018. Drugs in context, 7 p. 212527. Peer-reviewed.
Insight in the biology of Chlamydia-related bacteria.
Bayramova F., Jacquier N., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 432-440. Peer-reviewed.
 
Rapid Polymyxin NP test for the detection of polymyxin resistance mediated by the mcr-1/mcr-2 genes.
Poirel L., Larpin Y., Dobias J., Stephan R., Decousser J.W., Madec J.Y., Nordmann P., 2018/01. Diagnostic microbiology and infectious disease, 90 (1) pp. 7-10. Peer-reviewed.
Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms.
Bertelli C., Courtois S., Rosikiewicz M., Piriou P., Aeby S., Robert S., Loret J.F., Greub G., 2018. Frontiers in microbiology, 9 p. 2520. Peer-reviewed.
 
Studies of Lassa Virus Cell Entry.
Pasquato A., Fernandez A.H., Kunz S., 2018. Methods in molecular biology, 1604 pp. 135-155. Peer-reviewed.
 
Tick-borne pathogen detection: what's new?
Cabezas-Cruz A., Vayssier-Taussat M., Greub G., 2018. Microbes and infection, 20 (7-8) pp. 441-444. Peer-reviewed.
 
Waddlia chondrophila, a Chlamydia-related bacterium, has a negative impact on human spermatozoa.
Baud D., Vulliemoz N., Ammerdorffer A., Gyger J., Greub G., Castella V., Stojanov M., 2018/01/01. Human reproduction, 33 (1) pp. 3-10. Peer-reviewed.
Impact of HPV vaccination with Gardasil® in Switzerland.
Jacot-Guillarmod M., Pasquier J., Greub G., Bongiovanni M., Achtari C., Sahli R., 2017/12/22. BMC infectious diseases, 17 (1) p. 790. Peer-reviewed.
Neglected zoonotic agents in cattle abortion: tackling the difficult to grow bacteria.
Vidal S., Kegler K., Greub G., Aeby S., Borel N., Dagleish M.P., Posthaus H., Perreten V., Rodriguez-Campos S., 2017/12/02. BMC veterinary research, 13 (1) p. 373. Peer-reviewed.
 
Activity of the novel siderophore cephalosporin cefiderocol against multidrug-resistant Gram-negative pathogens.
Dobias J., Dénervaud-Tendon V., Poirel L., Nordmann P., 2017/12. European journal of clinical microbiology & infectious diseases, 36 (12) pp. 2319-2327. Peer-reviewed.
Analysis of OXA-204 carbapenemase-producing <i>Enterobacteriaceae</i> reveals possible endoscopy-associated transmission, France, 2012 to 2014.
Potron A., Bernabeu S., Cuzon G., Pontiès V., Blanchard H., Seringe E., Naas T., Nordmann P., Dortet L., 2017/12. Euro surveillance, 22 (49) pp. NA. Peer-reviewed.
 
Antimicrobial activity of octenidine against multidrug-resistant Gram-negative pathogens.
Alvarez-Marin R., Aires-de-Sousa M., Nordmann P., Kieffer N., Poirel L., 2017/12. European journal of clinical microbiology & infectious diseases, 36 (12) pp. 2379-2383. Peer-reviewed.
Blood lactose after dairy product intake in healthy men.
Pimentel G., Burton K.J., Rosikiewicz M., Freiburghaus C., von Ah U., Münger L.H., Pralong F.P., Vionnet N., Greub G., Badertscher R. et al., 2017/12. The British journal of nutrition, 118 (12) pp. 1070-1077. Peer-reviewed.
 
Dépistage du cancer du col de l’utérus et diagnostic des infections à papillomavirus
Bongiovanni M., Sahli R., 2017/12/01. Pipette : Pipette : Swiss Loboratory Medicine, 6 pp. 8-10. Peer-reviewed.
High Rate of MCR-1-Producing Escherichia coli and Klebsiella pneumoniae among Pigs, Portugal.
Kieffer N., Aires-de-Sousa M., Nordmann P., Poirel L., 2017/12. Emerging infectious diseases, 23 (12) pp. 2023-2029. Peer-reviewed.
 
Oxidation-sensitive polymersomes as vaccine nanocarriers enhance humoral responses against Lassa virus envelope glycoprotein.
Galan-Navarro C., Rincon-Restrepo M., Zimmer G., Ollmann Saphire E., Hubbell J.A., Hirosue S., Swartz M.A., Kunz S., 2017/12. Virology, 512 pp. 161-171. Peer-reviewed.
 
Skin Colonization by Staphylococcus aureus Precedes the Clinical Diagnosis of Atopic Dermatitis in Infancy.
Meylan P., Lang C., Mermoud S., Johannsen A., Norrenberg S., Hohl D., Vial Y., Prod'hom G., Greub G., Kypriotou M. et al., 2017/12. The Journal of investigative dermatology, 137 (12) pp. 2497-2504. Peer-reviewed.
Towards automated detection, semi-quantification and identification of microbial growth in clinical bacteriology: A proof of concept.
Croxatto A., Marcelpoil R., Orny C., Morel D., Prod'hom G., Greub G., 2017/12. Biomedical journal, 40 (6) pp. 317-328. Peer-reviewed.
 
Breaking the Barrier: Host Cell Invasion by Lujo Virus.
Kunz S., de la Torre J.C., 2017/11/08. Cell host & microbe, 22 (5) pp. 583-585. Peer-reviewed.
 
Microbiote, médecine de précision et microbiologie []
Schrenzel J., Greub G., 2017/11/08. Revue medicale suisse, 13 (582) p. 1958. Peer-reviewed.
Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus <i>Pneumocystis jirovecii</i>.
Schmid-Siegert E., Richard S., Luraschi A., Mühlethaler K., Pagni M., Hauser P.M., 2017/11/07. mBio, 8 (6) pp. e01470-17 . Peer-reviewed.
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.
Tagini F., Greub G., 2017/11. European journal of clinical microbiology & infectious diseases, 36 (11) pp. 2007-2020. Peer-reviewed.
 
Extended-spectrum β-lactamase/AmpC- and carbapenemase-producing Enterobacteriaceae in animals: a threat for humans?
Madec J.Y., Haenni M., Nordmann P., Poirel L., 2017/11. Clinical microbiology and infection, 23 (11) pp. 826-833. Peer-reviewed.
Genomics of the new species Kingella negevensis: diagnostic issues and identification of a locus encoding a RTX toxin.
Opota O., Laurent S., Pillonel T., Léger M., Trachsel S., Prod'hom G., Jaton K., Greub G., 2017/11. Microbes and infection, 19 (11) pp. 546-552. Peer-reviewed.
 
High-Level Resistance to Colistin Mediated by Various Mutations in the <i>crrB</i> Gene among Carbapenemase-Producing Klebsiella pneumoniae.
Jayol A., Nordmann P., Brink A., Villegas M.V., Dubois V., Poirel L., 2017/11. Antimicrobial agents and chemotherapy, 61 (11) pp. 1-4. Peer-reviewed.
 
Unravelling HIV-1 Latency, One Cell at a Time.
Kok Y.L., Ciuffi A., Metzner K.J., 2017/11. Trends in microbiology, 25 (11) pp. 932-941. Peer-reviewed.
 
06: Visualization of hepatitis E virus RNA and proteins in the human liver
Lenggenhager D, Gouttenoire J., Malehmir M., Bawohl M., Honcharova -Biletska H., Kreutzer S., Semela D., Neuweiler J., Hürlimann S., Aepli P. et al., 2017/10/20. pp. 571-572 dans Swiss Pathology Days, Der Pathologe.
 
A new equine and zoonotic threat emerges from an old avian pathogen, Chlamydia psittaci.
Polkinghorne A., Greub G., 2017/10. Clinical microbiology and infection, 23 (10) pp. 693-694. Peer-reviewed.
Cedratvirus lausannensis - digging into Pithoviridae diversity.
Bertelli C., Mueller L., Thomas V., Pillonel T., Jacquier N., Greub G., 2017/10. Environmental microbiology, 19 (10) pp. 4022-4034. Peer-reviewed.
 
MCR-2-mediated plasmid-borne polymyxin resistance most likely originates from Moraxella pluranimalium.
Poirel L., Kieffer N., Fernandez-Garayzabal J.F., Vela A.I., Larpin Y., Nordmann P., 2017/10/01. The Journal of antimicrobial chemotherapy, 72 (10) pp. 2947-2949. Peer-reviewed.
 
Plazomicin activity against polymyxin-resistant Enterobacteriaceae, including MCR-1-producing isolates.
Denervaud-Tendon V., Poirel L., Connolly L.E., Krause K.M., Nordmann P., 2017/10/01. The Journal of antimicrobial chemotherapy, 72 (10) pp. 2787-2791. Peer-reviewed.
Single-cell analysis identifies cellular markers of the HIV permissive cell.
Rato S., Rausell A., Muñoz M., Telenti A., Ciuffi A., 2017/10. PLoS pathogens, 13 (10) pp. e1006678. Peer-reviewed.
 
Transferability of the mcr-1 Colistin Resistance Gene.
Dénervaud Tendon V., Poirel L., Nordmann P., 2017/10. Microbial drug resistance, 23 (7) pp. 813-814. Peer-reviewed.
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.
Turk T., Bachmann N., Kadelka C., Böni J., Yerly S., Aubert V., Klimkait T., Battegay M., Bernasconi E., Calmy A. et al., 2017/09/12. eLife, 6 p. 1. Peer-reviewed.
 
Cross-resistance to human cationic antimicrobial peptides and to polymyxins mediated by the plasmid-encoded MCR-1?
Dobias J., Poirel L., Nordmann P., 2017/09. Clinical microbiology and infection, 23 (9) pp. 676.e1-676.e5. Peer-reviewed.
 
Ethnicity predicts viral rebound after travel to the tropics in HIV-infected travelers to the tropics in the Swiss HIV Cohort Study.
Gebreselassie H.M., Kraus D., Fux C.A., Haubitz S., Scherrer A., Hatz C., Veit O., Stoeckle M., Fehr J., de Lucia S. et al., 2017/09. HIV medicine, 18 (8) pp. 564-572. Peer-reviewed.
Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens.
Dorsaz S., Snäkä T., Favre-Godal Q., Maudens P., Boulens N., Furrer P., Ebrahimi S.N., Hamburger M., Allémann E., Gindro K. et al., 2017/09. Antimicrobial agents and chemotherapy, 61 (9) pp. 1-23. Peer-reviewed.
 
Increased colistin resistance upon acquisition of the plasmid-mediated mcr-1 gene in Escherichia coli isolates with chromosomally encoded reduced susceptibility to polymyxins.
Jayol A., Nordmann P., André C., Dubois V., Poirel L., 2017/09. International journal of antimicrobial agents, 50 (3) pp. 503-504. Peer-reviewed.
 
Visualization of hepatitis E virus RNA and proteins in the human liver.
Lenggenhager D., Gouttenoire J., Malehmir M., Bawohl M., Honcharova-Biletska H., Kreutzer S., Semela D., Neuweiler J., Hürlimann S., Aepli P. et al., 2017/09. Journal of hepatology, 67 (3) pp. 471-479. Peer-reviewed.
 
Clinical phenotype and outcome of hepatitis E virus-associated neuralgic amyotrophy.
van Eijk JJJ, Dalton H.R., Ripellino P., Madden R.G., Jones C., Fritz M., Gobbi C., Melli G., Pasi E., Herrod J. et al., 2017/08/29. Neurology, 89 (9) pp. 909-917. Peer-reviewed.
Potential Use of MALDI-ToF Mass Spectrometry for Rapid Detection of Antifungal Resistance in the Human Pathogen Candida glabrata.
Vella A., De Carolis E., Mello E., Perlin D.S., Sanglard D., Sanguinetti M., Posteraro B., 2017/08/22. Scientific reports, 7 (1) p. 9099. Peer-reviewed.
Multiplexed nanoplasmonic biosensor for one-step simultaneous detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine.
Soler M., Belushkin A., Cavallini A., Kebbi-Beghdadi C., Greub G., Altug H., 2017/08/15. Biosensors & bioelectronics, 94 pp. 560-567. Peer-reviewed.
Comparative Genomics of Two Sequential <i>Candida glabrata</i> Clinical Isolates.
Vale-Silva L., Beaudoing E., Tran VDT, Sanglard D., 2017/08/07. G3, 7 (8) pp. 2413-2426. Peer-reviewed.
Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study.
Alanio A., Gits-Muselli M., Guigue N., Desnos-Ollivier M., Calderon E.J., Di Cave D., Dupont D., Hamprecht A., Hauser P.M., Helweg-Larsen J. et al., 2017/08. EBioMedicine, 22 pp. 155-163. Peer-reviewed.
 
Evaluation of the RAPIDEC® CARBA NP and β-CARBA® tests for rapid detection of Carbapenemase-producing Enterobacteriaceae.
Mancini S., Kieffer N., Poirel L., Nordmann P., 2017/08. Diagnostic microbiology and infectious disease, 88 (4) pp. 293-297. Peer-reviewed.
 
First report of OXA-181 and NDM-1 from a clinical Klebsiella pneumoniae isolate from Nigeria.
Uwaezuoke N.S., Kieffer N., Iregbu K.C., Nordmann P., 2017/08. International journal of infectious diseases, 61 pp. 1-2. Peer-reviewed.
Primate lentiviruses use at least three alternative strategies to suppress NF-κB-mediated immune activation.
Hotter D., Krabbe T., Reith E., Gawanbacht A., Rahm N., Ayouba A., Van Driessche B., Van Lint C., Peeters M., Kirchhoff F. et al., 2017/08. PLoS pathogens, 13 (8) pp. e1006598. Peer-reviewed.
Simkania negevensis, an Example of the Diversity of the Antimicrobial Susceptibility Pattern among Chlamydiales.
Vouga M., Baud D., Greub G., 2017/08. Antimicrobial agents and chemotherapy, 61 (8) pp. 1-5. Peer-reviewed.
Exploring viral infection using single-cell sequencing.
Rato S., Golumbeanu M., Telenti A., Ciuffi A., 2017/07/15. Virus research, 239 pp. 55-68. Peer-reviewed.
 
Akute und chronische Hepatitis E []
Fraga M., Gouttenoire J., Sahli R., Moradpour D., 2017/07. Therapeutische Umschau. Revue therapeutique, 74 (3) pp. 109-113. Peer-reviewed.
Identification and Functional Ascertainment of the Pneumocystis jirovecii Potential Drug Targets Gsc1 and Kre6 Involved in Glucan Synthesis.
Luraschi A., Cissé O.H., Pagni M., Hauser P.M., 2017/07. The Journal of eukaryotic microbiology, 64 (4) pp. 481-490. Peer-reviewed.
Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections.
Tagini F., Aubert B., Troillet N., Pillonel T., Praz G., Crisinel P.A., Prod'hom G., Asner S., Greub G., 2017/07. European journal of clinical microbiology & infectious diseases, 36 (7) pp. 1173-1180. Peer-reviewed.
 
In Vitro Study of ISApl1-Mediated Mobilization of the Colistin Resistance Gene mcr-1.
Poirel L., Kieffer N., Nordmann P., 2017/07. Antimicrobial agents and chemotherapy, 61 (7) p. 10.1128. Peer-reviewed.
 
Lack of polymyxin resistance among carbapenemase-producing Enterobacteriaceae in a university hospital in China.
Jiang X., Poirel L., Nordmann P., 2017/07. Infectious diseases, 49 (7) pp. 556-557. Peer-reviewed.
 
Management: from antibiotic stewardship to clinical microbiology.
Greub G., 2017/07. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 23 (7) pp. 424-425. Peer-reviewed.
Mentor-mentee relationship in clinical microbiology.
Opota O., Greub G., 2017/07. Clinical microbiology and infection, 23 (7) pp. 448-453. Peer-reviewed.
Preventive Strategies Against Cytomegalovirus and Incidence of α-Herpesvirus Infections in Solid Organ Transplant Recipients: A Nationwide Cohort Study.
Martin-Gandul C., Stampf S., Héquet D., Mueller N.J., Cusini A., van Delden C., Khanna N., Boggian K., Hirzel C., Soccal P. et al., 2017/07. American journal of transplantation, 17 (7) pp. 1813-1822. Peer-reviewed.
Project management: importance for diagnostic laboratories.
Croxatto A., Greub G., 2017/07. Clinical microbiology and infection, 23 (7) pp. 434-440. Peer-reviewed.
 
Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia.
Damonti L., Erard V., Garbino J., Schrenzel J., Zimmerli S., Mühlethaler K., Imhof A., Zbinden R., Fehr J., Boggian K. et al., 2017/06. Intensive care medicine, 43 (6) pp. 935-939. Peer-reviewed.
 
Changing Epidemiology of Invasive Mold Infections in Patients Receiving Azole Prophylaxis.
Lamoth F., Chung S.J., Damonti L., Alexander B.D., 2017/06/01. Clinical infectious diseases, 64 (11) pp. 1619-1621. Peer-reviewed.
 
Chlamydia trachomatis and chlamydia-like bacteria: new enemies of human pregnancies.
Ammerdorffer A., Stojanov M., Greub G., Baud D., 2017/06. Current opinion in infectious diseases, 30 (3) pp. 289-296. Peer-reviewed.
 
Determining the analytical specificity of PCR-based assays for the diagnosis of IA: What is Aspergillus?
Morton C.O., White P.L., Barnes R.A., Klingspor L., Cuenca-Estrella M., Lagrou K., Bretagne S., Melchers W., Mengoli C., Caliendo A.M. et al., 2017/06/01. Medical mycology, 55 (4) pp. 402-413. Peer-reviewed.
 
Moraxella Species as Potential Sources of MCR-Like Polymyxin Resistance Determinants.
Kieffer N., Nordmann P., Poirel L., 2017/06. Antimicrobial agents and chemotherapy, 61 (6) pp. e00129-17. Peer-reviewed.
Nanomechanical sensor applied to blood culture pellets: a fast approach to determine the antibiotic susceptibility against agents of bloodstream infections.
Stupar P., Opota O., Longo G., Prod'hom G., Dietler G., Greub G., Kasas S., 2017/06. Clinical microbiology and infection, 23 (6) pp. 400-405. Peer-reviewed.
One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions.
Mueller L., Bertelli C., Pillonel T., Salamin N., Greub G., 2017/06/01. Genome biology and evolution, 9 (6) pp. 1432-1449. Peer-reviewed.
 
Prevalence of faecal carriage of colistin-resistant Gram-negative rods in a university hospital in western France, 2016.
Saly M., Jayol A., Poirel L., Megraud F., Nordmann P., Dubois V., 2017/06. Journal of medical microbiology, 66 (6) pp. 842-843. Peer-reviewed.
Draft Genome Sequences of Two Carbapenemase-Producing Acinetobacter baumannii Clinical Strains Isolated from Albanian and Togolese Patients.
Abdelbary MMH, Prod'hom G., Greub G., Senn L., Blanc D.S., 2017/05/18. Genome announcements, 5 (20) pp. 1-2. Peer-reviewed.
 
Panels gastro-intestinaux par PCR multiplex pour la prise en chargedes diarrhées du voyageur : performants et utiles ? [Multiplex PCR gastro-intestinal panels for the management of traveller's diarrhea : are they accurate and useful?]
Rochat L., Croxatto A., De Vallière S., D'Acremont V., Genton B., 2017/05/03. Revue medicale suisse, 13 (561) pp. 963-967. Peer-reviewed.
 
Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria.
Taylor-Brown A., Pillonel T., Bridle A., Qi W., Bachmann N.L., Miller T.L., Greub G., Nowak B., Seth-Smith HMB, Vaughan L. et al., 2017/05. Environmental microbiology, 19 (5) pp. 1899-1913. Peer-reviewed.
 
Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study.
Béguelin C., Friolet N., Moradpour D., Sahli R., Suter-Riniker F., Lüthi A., Cavassini M., Günthard H.F., Battegay M., Bernasconi E. et al., 2017/05/01. Clinical infectious diseases, 64 (9) pp. 1275-1278. Peer-reviewed.
 
Probiotic yogurt and acidified milk similarly reduce postprandial inflammation and both alter the gut microbiota of healthy, young men.
Burton K.J., Rosikiewicz M., Pimentel G., Bütikofer U., von Ah U., Voirol M.J., Croxatto A., Aeby S., Drai J., McTernan P.G. et al., 2017/05. The British journal of nutrition, 117 (9) pp. 1312-1322. Peer-reviewed.
β-Klotho deficiency protects against obesity through a crosstalk between liver, microbiota, and brown adipose tissue.
Somm E., Henry H., Bruce S.J., Aeby S., Rosikiewicz M., Sykiotis G.P., Asrih M., Jornayvaz F.R., Denechaud P.D., Albrecht U. et al., 2017/04/20. JCI insight, 2 (8). Peer-reviewed.
Applications of MALDI-TOF Mass Spectrometry in Clinical Diagnostic Microbiology
Opota Onya, Prod'hom Guy, Greub Gilbert, 2017/04/07. pp. 55-92 dans MALDI-TOF and Tandem MS for Clinical Microbiology, John Wiley & Sons, Ltd.
 
Characterization of BRPMBL, the Bleomycin Resistance Protein Associated with the Carbapenemase NDM.
Dortet L., Girlich D., Virlouvet A.L., Poirel L., Nordmann P., Iorga B.I., Naas T., 2017/04. Antimicrobial agents and chemotherapy, 61 (3) pp. e02413-16. Peer-reviewed.
Lausannevirus Encodes a Functional Dihydrofolate Reductase Susceptible to Proguanil.
Mueller L., Hauser P.M., Gauye F., Greub G., 2017/04. Antimicrobial agents and chemotherapy, 61 (4) pp. e02573-16. Peer-reviewed.
 
Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients-authors' response.
Cordonnier C., Alanio A., Cesaro S., Maschmeyer G., Einsele H., Donnelly J.P., Hauser P.M., Lagrou K., Melchers W.J., Helweg-Larsen J. et al., 2017/04/01. The Journal of antimicrobial chemotherapy, 72 (4) pp. 1266-1268. Peer-reviewed.
 
Polymyxins: Antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes.
Poirel L., Jayol A., Nordmann P., 2017/04. Clinical microbiology reviews, 30 (2) pp. 557-596. Peer-reviewed.
 
Population Pharmacokinetics and Pharmacogenetics Analysis of Rilpivirine in HIV-1-Infected Individuals.
Aouri M., Barcelo C., Guidi M., Rotger M., Cavassini M., Hizrel C., Buclin T., Decosterd L.A., Csajka C., Swiss HIV Cohort Study, 2017/04. Antimicrobial agents and chemotherapy, 61 (1) p. 10. Peer-reviewed.
 
Rapid Aminoglycoside NP Test for Rapid Detection of Multiple Aminoglycoside Resistance in Enterobacteriaceae.
Nordmann P., Jayol A., Dobias J., Poirel L., 2017/04. Journal of clinical microbiology, 55 (4) pp. 1074-1079. Peer-reviewed.
 
Recent advances in biochemical and molecular diagnostics for the rapid detection of antibiotic-resistant Enterobacteriaceae: a focus on ß-lactam resistance.
Decousser J.W., Poirel L., Nordmann P., 2017/04. Expert review of molecular diagnostics, 17 (4) pp. 327-350. Peer-reviewed.
 
Early diagnosis of invasive mould infections and disease.
Lamoth F., Calandra T., 2017/03/01. The Journal of antimicrobial chemotherapy, 72 (suppl_1) pp. i19-i28. Peer-reviewed.
 
Human MicroRNA Responses Predict Cytomegalovirus Replication Following Solid Organ Transplantation.
Han S.H., Kumar D., Ferreira V.H., Egli A., Hirsch H.H., Weisser M., Garzoni C., van Delden C., Bochud P.Y., Manuel O. et al., 2017/02/15. The Journal of infectious diseases, 215 (4) pp. 537-546. Peer-reviewed.
 
Lassa Virus Cell Entry Reveals New Aspects of Virus-Host Cell Interaction.
Torriani G., Galan-Navarro C., Kunz S., 2017/02/15. Journal of virology, 91 (4) pp. e01902-16. Peer-reviewed.
Trends in carbapenemase-producing Enterobacteriaceae, France, 2012 to 2014.
Dortet L., Cuzon G., Ponties V., Nordmann P., 2017/02/09. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 22 (6) p. 0. Peer-reviewed.
 
Hepatitis delta-associated mortality in HIV/HBV-coinfected patients.
Béguelin C., Moradpour D., Sahli R., Suter-Riniker F., Lüthi A., Cavassini M., Günthard H.F., Battegay M., Bernasconi E., Schmid P. et al., 2017/02. Journal of hepatology, 66 (2) pp. 297-303. Peer-reviewed.
Simkania negevensis, an insight into the biology and clinical importance of a novel member of the Chlamydiales order.
Vouga M., Baud D., Greub G., 2017/02. Critical reviews in microbiology, 43 (1) pp. 62-80.
Rapid adaptation drives invasion of airway donor microbiota by Pseudomonas after lung transplantation.
Beaume M., Köhler T., Greub G., Manuel O., Aubert J.D., Baerlocher L., Farinelli L., Buckling A., van Delden C., Swiss Transplant Cohort Study, 2017/01/17. Scientific reports, 7 p. 40309. Peer-reviewed.
 
Single-virus tracking uncovers the missing link between HIV integration site location and viral gene expression.
Ciuffi A., Cristinelli S., Rato S., 2017/01/05. Nature structural & molecular biology, 24 (1) pp. 8-11. Peer-reviewed.
Associations Between Antiretroviral Treatment and Avascular Bone Necrosis: The Swiss HIV Cohort Study.
Bayard C., Ledergerber B., Flepp M., Lecompte T., Moulin E., Hoffmann M., Weber R., Staehelin C., Di Benedetto C., Fux C.A. et al., 2017. Open forum infectious diseases, 4 (4) pp. ofx177. Peer-reviewed.
Azole Resistance in <i>Aspergillus fumigatus</i>: A Consequence of Antifungal Use in Agriculture?
Berger S., El Chazli Y., Babu A.F., Coste A.T., 2017. Frontiers in microbiology, 8 p. 1024. Peer-reviewed.
Bacillus cereus bacteraemia: comparison between haematologic and nonhaematologic patients.
Tusgul S., Prod'hom G., Senn L., Meuli R., Bochud P.Y., Giulieri S.G., 2017/01. New microbes and new infections, 15 pp. 65-71. Peer-reviewed.
 
ESCMID postgraduate education course: applications of MALDI-TOF mass spectrometry in clinical microbiology.
Greub G., Moran-Gilad J., Rossen J., Egli A., ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD), 2017. Microbes and infection, 19 (9-10) pp. 433-442. Peer-reviewed.
Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathogens.
Opota O., Diene S.M., Bertelli C., Prod'hom G., Eckert P., Greub G., 2017/01. International journal of antimicrobial agents, 49 (1) pp. 93-97. Peer-reviewed.
HPV-negative CIN3 and cervical cancer in Switzerland: any evidence of impact on screening policies?
Vassilakos P., Tran P.L., Sahli R., Low N., Petignat P., 2017. Swiss medical weekly, 147 pp. w14559. Peer-reviewed.
Internal quality assurance in diagnostic microbiology: A simple approach for insightful data.
Scherz V., Durussel C., Greub G., 2017. PloS one, 12 (11) pp. e0187263. Peer-reviewed.
 
Messages from the first International Conference on Clinical Metagenomics (ICCMg).
Ruppé E., Greub G., Schrenzel J., 2017. Microbes and infection, 19 (4-5) pp. 223-228. Peer-reviewed.
Methods for Real-Time PCR-Based Diagnosis of Chlamydia pneumoniae, Chlamydia psittaci, and Chlamydia abortus Infections in an Opened Molecular Diagnostic Platform.
Opota O., Brouillet R., Greub G., Jaton K., 2017. Methods in molecular biology, 1616 pp. 171-181. Peer-reviewed.
Ochroconis gallopava bronchitis mimicking haemoptysis in a patient with bronchiectasis.
Bernasconi M., Voinea C., Hauser P.M., Nicod L.P., Lazor R., 2017. Respiratory medicine case reports, 22 pp. 215-217. Peer-reviewed.
Prevalence and diversity of Chlamydiales and other amoeba-resisting bacteria in domestic drinking water systems.
Lienard J., Croxatto A., Gervaix A., Lévi Y., Loret J.F., Posfay-Barbe K.M., Greub G., 2017/01. New microbes and new infections, 15 pp. 107-116. Peer-reviewed.
Red-Shifted Firefly Luciferase Optimized for Candida albicans In vivo Bioluminescence Imaging.
Dorsaz S., Coste A.T., Sanglard D., 2017. Frontiers in microbiology, 8 p. 1478. Peer-reviewed.
Simkania negevensis may produce long-lasting infections in human pneumocytes and endometrial cells.
Vouga M., Baud D., Greub G., 2017/01/01. Pathogens and disease, 75 (1) p. 1. Peer-reviewed.
The Anticancer Peptide TAT-RasGAP317-326 Exerts Broad Antimicrobial Activity.
Heulot M., Jacquier N., Aeby S., Le Roy D., Roger T., Trofimenko E., Barras D., Greub G., Widmann C., 2017. Frontiers in microbiology, 8 p. 994. Peer-reviewed.
Unexpected Transcripts in Tn7 orf19.2646 C. albicans Mutant Lead to Low Fungal Burden Phenotype In vivo.
Pierrehumbert A., Ischer F., Coste A.T., 2017. Frontiers in microbiology, 8 p. 873. Peer-reviewed.
 
The Swiss Society of Microbiology: Small Bugs, Big Questions and Cool Answers.
Greub G., Holliger C., Sanglard D., Schrenzel J., Thiel V., Viollier P., 2016/12/21. Chimia, 70 (12) pp. 874-877. Peer-reviewed.
Chlamydia-Related Bacteria in Free-Living and Captive Great Apes, Gabon.
Klöckner A., Nagel M., Greub G., Aeby S., Hoffmann K., Liégeois F., Rouet F., De Benedetti S., Borel N., Henrichfreise B., 2016/12. Emerging infectious diseases, 22 (12) pp. 2199-2201. Peer-reviewed.
HIV-1 latent reservoir: size matters.
Hodel F., Patxot M., Snäkä T., Ciuffi A., 2016/12. Future virology, 11 (12) pp. 785-794. Peer-reviewed.
 
Transposition of Tn125 Encoding the NDM-1 Carbapenemase in Acinetobacter baumannii.
Bontron S., Nordmann P., Poirel L., 2016/12. Antimicrobial agents and chemotherapy, 60 (12) pp. 7245-7251. Peer-reviewed.
 
Determinants of HIV-1 broadly neutralizing antibody induction.
Rusert P., Kouyos R.D., Kadelka C., Ebner H., Schanz M., Huber M., Braun D.L., Hozé N., Scherrer A., Magnus C. et al., 2016/11. Nature medicine, 22 (11) pp. 1260-1267. Peer-reviewed.
 
Eravacycline Is Active against Bacterial Isolates Expressing the Polymyxin Resistance Gene mcr-1.
Fyfe C., LeBlanc G., Close B., Nordmann P., Dumas J., Grossman T.H., 2016/11. Antimicrobial agents and chemotherapy, 60 (11) pp. 6989-6990. Peer-reviewed.
 
First international external quality assessment for hepatitis delta virus RNA quantification in plasma.
Le Gal F., Brichler S., Sahli R., Chevret S., Gordien E., 2016/11. Hepatology, 64 (5) pp. 1483-1494. Peer-reviewed.
High-Resolution Genetics Identifies the Lipid Transfer Protein Sec14p as Target for Antifungal Ergolines.
Filipuzzi I., Cotesta S., Perruccio F., Knapp B., Fu Y., Studer C., Pries V., Riedl R., Helliwell S.B., Petrovic K.T. et al., 2016/11. PLoS genetics, 12 (11) pp. e1006374. Peer-reviewed.
 
Screening of plasmid-mediated MCR-1 colistin-resistance from bacteremia.
Nordmann P., Assouvie L., Prod'Hom G., Poirel L., Greub G., 2016/11. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 35 (11) pp. 1891-1892. Peer-reviewed.
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay.
Trypsteen W., Mohammadi P., Van Hecke C., Mestdagh P., Lefever S., Saeys Y., De Bleser P., Vandesompele J., Ciuffi A., Vandekerckhove L. et al., 2016/10/26. Scientific reports, 6 p. 36111. Peer-reviewed.
 
Virus Zika : de la recherche au vaccin [Zika virus : from research to vaccine]
Vouga M., Alves M.P., Eperon I., Eperon G., Rochat L., Sahli R., Musso D., Baud D., 2016/10/26. Revue medicale suisse, 12 (536) pp. 1794-1798. Peer-reviewed.
Révolution dans le monde de la Tuberculose
Opota Onya, Jaton Katia, 2016/10/04. Newsletter Microbiologie Diagnostic.
Dual action antifungal small molecule modulates multidrug efflux and TOR signaling.
Shekhar-Guturja T., Gunaherath G.M., Wijeratne E.M., Lambert J.P., Averette A.F., Lee S.C., Kim T., Bahn Y.S., Tripodi F., Ammar R. et al., 2016/10. Nature chemical biology, 12 (10) pp. 867-875. Peer-reviewed.
 
Features of the mcr-1 Cassette Related to Colistin Resistance.
Zurfluh K., Kieffer N., Poirel L., Nordmann P., Stephan R., 2016/10. Antimicrobial agents and chemotherapy, 60 (10) pp. 6438-6439. Peer-reviewed.
 
Should testing of donors be restricted to active Zika virus areas?
Musso D., Baud D., Freedman D.O., 2016/10. The Lancet. Infectious diseases, 16 (10) pp. 1108-1109. Peer-reviewed.
Visceral leishmaniasis in a lung transplant recipient: usefulness of highly sensitive real-time polymerase chain reaction for preemptive diagnosis.
Opota O., Balmpouzis Z., Berutto C., Kaiser-Guignard J., Greub G., Aubert J.D., Prod'hom G., Manuel O., Jaton K., 2016/10. Transplant infectious disease, 18 (5) pp. 801-804. Peer-reviewed.
Draft Genome Sequence of a Cardiobacterium hominis Strain Isolated from Blood Cultures of a Patient with Infective Endocarditis.
Tagini F., Pillonel T., Asner S., Prod'hom G., Greub G., 2016/09/22. Genome announcements, 4 (5) p. 4. Peer-reviewed.
Rapid Detection of Polymyxin-Resistant Enterobacteriaceae from Blood Cultures.
Jayol A., Dubois V., Poirel L., Nordmann P., 2016/09. Journal of clinical microbiology, 54 (9) pp. 2273-2277. Peer-reviewed.
Regulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum.
de Barsy M., Frandi A., Panis G., Théraulaz L., Pillonel T., Greub G., Viollier P.H., 2016/09. The ISME journal, 10 (9) pp. 2129-2144. Peer-reviewed.
Identification of Siglec-1 null individuals infected with HIV-1
Martinez-Picado Javier, McLaren Paul J., Erkizia Itziar, Martin Maureen P., Benet Susana, Rotger Margalida, Dalmau Judith, Ouchi Dan, Wolinsky Steven M., Penugonda Sudhir et al., 2016/08/11. Nature Communications, 7 p. 12412.
Common skin infection due to Panton-Valentine leucocidin-producing Staphylococcus aureus strains in asylum seekers from Eritrea: a genome-based investigation of a suspected outbreak
Jaton L., Pillonel T., Jaton K., Dory E., Prod'hom G., Blanc D.S., Tissot F., Bodenmann P., Greub G., 2016/08. Clinical microbiology and infection, 22 (8) pp. 739.e5-8. Peer-reviewed.
 
Hepatitis E virus infection as a direct cause of neuralgic amyotrophy.
Silva M., Wicki B., Tsouni P., Cunningham S., Doerig C., Zanetti G., Aubert V., Sahli R., Moradpour D., Kuntzer T., 2016/08. Muscle & nerve, 54 (2) pp. 325-327. Peer-reviewed.
Privacy-preserving genomic testing in the clinic: a model using HIV treatment.
McLaren P.J., Raisaro J.L., Aouri M., Rotger M., Ayday E., Bartha I., Delgado M.B., Vallet Y., Günthard H.F., Cavassini M. et al., 2016/08. Genetics in medicine, 18 (8) pp. 814-822. Peer-reviewed.
 
Lassa Virus Cell Entry via Dystroglycan Involves an Unusual Pathway of Macropinocytosis.
Oppliger J., Torriani G., Herrador A., Kunz S., 2016/07/15. Journal of virology, 90 (14) pp. 6412-6429. Peer-reviewed.
Added value of molecular assay Xpert MTB/RIF compared to sputum smear microscopy to assess the risk of tuberculosis transmission in a low-prevalence country.
Opota O., Senn L., Prod'hom G., Mazza-Stalder J., Tissot F., Greub G., Jaton K., 2016/07. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (7) pp. 613-619. Peer-reviewed.
 
Genetic Features of MCR-1-Producing Colistin-Resistant Escherichia coli Isolates in South Africa.
Poirel L., Kieffer N., Brink A., Coetze J., Jayol A., Nordmann P., 2016/07. Antimicrobial agents and chemotherapy, 60 (7) pp. 4394-4397. Peer-reviewed.
 
Population pharmacokinetic analysis of elvitegravir and cobicistat in HIV-1-infected individuals.
Barceló C., Gaspar F., Aouri M., Panchaud A., Rotger M., Guidi M., Cavassini M., Buclin T., Decosterd L.A., Csajka C. et al., 2016/07. The Journal of antimicrobial chemotherapy, 71 (7) pp. 1933-1942. Peer-reviewed.
 
Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country.
Stucki D., Ballif M., Egger M., Furrer H., Altpeter E., Battegay M., Droz S., Bruderer T., Coscolla M., Borrell S. et al., 2016/07. Journal of clinical microbiology, 54 (7) pp. 1862-1870. Peer-reviewed.
 
Humoral, T-cell and B-cell immune responses to seasonal influenza vaccine in solid organ transplant recipients receiving anti-T cell therapies.
Héquet D., Pascual M., Lartey S., Pathirana R.D., Bredholt G., Hoschler K., Hullin R., Meylan P., Cox R.J., Manuel O., 2016/06/30. Vaccine, 34 (31) pp. 3576-3583. Peer-reviewed.
Innate immune defects in HIV permissive cell lines.
Rausell A., Muñoz M., Martinez R., Roger T., Telenti A., Ciuffi A., 2016/06/27. Retrovirology, 13 (1) p. 43. Peer-reviewed.
 
Hepatitis E
Béguelin Charles, Fraga Montserrat, Wandeler Gilles, Sahli Roland, Rauch Andri, Moradpour Darius, 2016/06/14. Swiss Medical Forum ‒ Schweizerisches Medizin-Forum, 16 (24) pp. 510-514. Peer-reviewed.
Comparative genomics of Neisseria meningitidis strains: new targets for molecular diagnostics.
Diene S.M., Bertelli C., Pillonel T., Jacquier N., Croxatto A., Jaton K., Greub G., 2016/06. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (6) pp. 568.e1-7. Peer-reviewed.
 
Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences.
Jelen M.M., Chen Z., Kocjan B.J., Hošnjak L., Burt F.J., Chan P.K., Chouhy D., Combrinck C.E., Estrade C., Fiander A. et al., 2016/06/01. Journal of virology, 90 (11) pp. 5503-5513. Peer-reviewed.
Human papillomavirus (HPV) contamination of gynaecological equipment.
Gallay C., Miranda E., Schaefer S., Catarino R., Jacot-Guillarmod M., Menoud P.A., Guerry F., Achtari C., Sahli R., Vassilakos P. et al., 2016/06. Sexually Transmitted Infections, 92 (1) pp. 19-23. Peer-reviewed.
Pleiotropic effects of the vacuolar ABC transporter MLT1 of Candida albicans on cell function and virulence.
Khandelwal N.K., Kaemmer P., Förster T.M., Singh A., Coste A.T., Andes D.R., Hube B., Sanglard D., Chauhan N., Kaur R. et al., 2016/06/01. The Biochemical journal, 473 (11) pp. 1537-1552. Peer-reviewed.
 
Role of Antifungal Susceptibility Testing in Non-Aspergillus Invasive Mold Infections.
Lamoth F., Damonti L., Alexander B.D., 2016/06. Journal of clinical microbiology, 54 (6) pp. 1638-1640. Peer-reviewed.
The salivary microbiome for differentiating individuals: proof of principle.
Leake S.L., Pagni M., Falquet L., Taroni F., Greub G., 2016/06. Microbes and infection, 18 (6) pp. 399-405. Peer-reviewed.
 
Zika virus: time to move from case reports to case control.
Musso D., Baud D., 2016/06. The Lancet. Infectious diseases, 16 (6) pp. 620-621. Peer-reviewed.
Systems biology applications to study mechanisms of human immunodeficiency virus latency and reactivation
White Cory H, Moesker Bastiaan, Ciuffi Angela, Beliakova-Bethell Nadejda, 2016/05/25. World Journal of Clinical Infectious Diseases, 6 (2) pp. 6-21. Peer-reviewed.
 
Avantages et limites des différents systèmes d'automatisation en bactériologie
Greub Gilbert, Prod'hom Guy, Croxatto Antony, 2016/05. Revue Francophone des Laboratoires, 2016 (482) pp. 61-66.
 
Plasmid-mediated colistin resistance: an additional antibiotic resistance menace.
Nordmann P., Poirel L., 2016/05. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (5) pp. 398-400. Peer-reviewed.
 
Biological Characterization and in Vivo Assessment of the Activity of a New Synthetic Macrocyclic Antifungal Compound.
Deodato D., Maccari G., De Luca F., Sanfilippo S., Casian A., Martini R., D'Arezzo S., Bonchi C., Bugli F., Posteraro B. et al., 2016/04/28. Journal of medicinal chemistry, 59 (8) pp. 3854-3866. Peer-reviewed.
 
Polymorphisms in the lectin pathway of complement activation influence the incidence of acute rejection and graft outcome after kidney transplantation.
Golshayan D., Wójtowicz A., Bibert S., Pyndiah N., Manuel O., Binet I., Buhler L.H., Huynh-Do U., Mueller T., Steiger J. et al., 2016/04. Kidney international, 89 (4) pp. 927-938. Peer-reviewed.
The benefits of integration.
Ciuffi A., 2016/04. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (4) pp. 324-332. Peer-reviewed.
 
Traitement de la maladie de Fabry : succès, échecs, espoirs [Treatment of Fabry disease: Successes, failures, and expectations]
Lidove O., Barbey F., Joly D., 2016/04. Nephrologie & therapeutique, 12 Suppl 1 pp. S105-13. Peer-reviewed.
Absence of hepatitis delta infection in a large rural HIV cohort in Tanzania.
Winter A., Letang E., Vedastus Kalinjuma A., Kimera N., Ntamatungiro A., Glass T., Moradpour D., Sahli R., Le Gal F., Furrer H. et al., 2016/03. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 46 pp. 8-10. Peer-reviewed.
 
Automation in bacteriology: a changing way to perform clinical diagnosis in infectious diseases.
Lina G., Greub G., 2016/03. Clinical microbiology and infection, 22 (3) pp. 215-216. Peer-reviewed.
 
Bacterial Translocation and Sample Contamination in Postmortem Microbiological Analyses.
Palmiere C., Egger C., Prod'Hom G., Greub G., 2016/03. Journal of forensic sciences, 61 (2) pp. 367-374. Peer-reviewed.
 
Identification of Aspergillus fumigatus multidrug transporter genes and their potential involvement in antifungal resistance.
Meneau I., Coste A.T., Sanglard D., 2016/03/01. Medical mycology, 54 (6) pp. 616-627. Peer-reviewed.
Laboratory automation in clinical bacteriology: what system to choose?
Croxatto A., Prod'hom G., Faverjon F., Rochais Y., Greub G., 2016/03. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (3) pp. 217-235. Peer-reviewed.
 
Delamanid and Bedaquiline Resistance in Mycobacterium tuberculosis Ancestral Beijing Genotype Causing Extensively Drug-Resistant Tuberculosis in a Tibetan Refugee.
Hoffmann H., Kohl T.A., Hofmann-Thiel S., Merker M., Beckert P., Jaton K., Nedialkova L., Sahalchyk E., Rothe T., Keller P.M. et al., 2016/02/01. American journal of respiratory and critical care medicine, 193 (3) pp. 337-340. Peer-reviewed.
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
A Molecular Sensor To Characterize Arenavirus Envelope Glycoprotein Cleavage by Subtilisin Kexin Isozyme 1/Site 1 Protease.
Oppliger J., da Palma J.R., Burri D.J., Bergeron E., Khatib A.M., Spiropoulou C.F., Pasquato A., Kunz S., 2016. Journal of Virology, 90 (2) pp. 705-714. Peer-reviewed.
A New Endogenous Overexpression System of Multidrug Transporters of Candida albicans Suitable for Structural and Functional Studies.
Banerjee A., Khandelwal N.K., Sanglard D., Prasad R., 2016. Frontiers In Microbiology, 7 p. 261. Peer-reviewed.
A Zebrafish Model for Chlamydia Infection with the Obligate Intracellular Pathogen Waddlia chondrophila.
Fehr A.G., Ruetten M., Seth-Smith H.M., Nufer L., Voegtlin A., Lehner A., Greub G., Crosier P.S., Neuhauss S.C., Vaughan L., 2016. Frontiers in microbiology, 7 p. 1829. Peer-reviewed.
 
Antifungal Quinoline Alkaloids from Waltheria indica.
Cretton S., Dorsaz S., Azzollini A., Favre-Godal Q., Marcourt L., Ebrahimi S.N., Voinesco F., Michellod E., Sanglard D., Gindro K. et al., 2016. Journal of Natural Products, 79 (2) pp. 300-307. Peer-reviewed.
Aspergillus fumigatus-Related Species in Clinical Practice.
Lamoth F., 2016. Frontiers In Microbiology, 7 p. 683. Peer-reviewed.
 
CDC guidelines for pregnant women during the Zika virus outbreak.
Vouga M., Musso D., Van Mieghem T., Baud D., 2016. Lancet, 387 (10021) pp. 843-844. Peer-reviewed.
Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria.
Ardissone S., Redder P., Russo G., Frandi A., Fumeaux C., Patrignani A., Schlapbach R., Falquet L., Viollier P.H., 2016. PLoS Genetics, 12 (12) pp. e1006499.
 
Chlamydial polymorphic membrane proteins: regulation, function and potential vaccine candidates.
Vasilevsky S., Stojanov M., Greub G., Baud D., 2016. Virulence, 7 (1) pp. 11-22. Peer-reviewed.
Clinical validation of Anyplex? II HPV HR Detection according to the guidelines for HPV test requirements for cervical cancer screening.
Hesselink A.T., Sahli R., Berkhof J., Snijders P.J., van der Salm M.L., Agard D., Bleeker M.C., Heideman D.A., 2016. Journal of Clinical Virology, 76 pp. 36-39. Peer-reviewed.
Conserved Endonuclease Function of Hantavirus L Polymerase.
Rothenberger S., Torriani G., Johansson M.U., Kunz S., Engler O., 2016. Viruses, 8 (5) pp. E108. Peer-reviewed.
Contribution of Genetic Background and Clinical Risk Factors to Low-Trauma Fractures in Human Immunodeficiency Virus (HIV)-Positive Persons: The Swiss HIV Cohort Study.
Junier T., Rotger M., Biver E., Ledergerber B., Barceló C., Bartha I., Kovari H., Schmid P., Fux C., Bernasconi E. et al., 2016. Open Forum Infectious Diseases, 3 (2) pp. ofw101. Peer-reviewed.
CRISPR System Acquisition and Evolution of an Obligate Intracellular Chlamydia-Related Bacterium.
Bertelli C., Cissé O.H., Rusconi B., Kebbi-Beghdadi C., Croxatto A., Goesmann A., Collyn F., Greub G., 2016. Genome Biology and Evolution, 8 (8) pp. 2376-2386. Peer-reviewed.
Development and evaluation of double locus sequence typing for molecular epidemiological investigations of Clostridium difficile.
Stojanov M., Magalhaes B., Terletsky V., Basset P., Prod'hom G., Greub G., Senn L., Blanc D.S., 2016. European Journal of Clinical Microbiology and Infectious Diseases, 35 (2) pp. 175-181. Peer-reviewed.
 
Diagnosis of Aerococcus urinae infections: Importance of matrix-assisted laser desorption ionization time-of-flight mass spectrometry and broad-range 16S rDNA PCR.
Opota O., Prod'hom G., Andreutti-Zaugg C., Dessauges M., Merz L., Greub G., Chave J.P., Jaton K., 2016. Clinical Microbiology and Infection, 22 (1) pp. e1-e2. Peer-reviewed.
 
Discovering new pathogenic prokaryotes.
Greub G., 2016. Clinical Microbiology and Infection, 22 (1) pp. 10-11. Peer-reviewed.
 
ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients.
Maertens J., Cesaro S., Maschmeyer G., Einsele H., Donnelly J.P., Alanio A., Hauser P.M., Lagrou K., Melchers W.J., Helweg-Larsen J. et al., 2016. Journal of Antimicrobial Chemotherapy, 71 (9) pp. 2397-2404. Peer-reviewed.
 
ECIL guidelines for the diagnosis of Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients.
Alanio A., Hauser P.M., Lagrou K., Melchers W.J., Helweg-Larsen J., Matos O., Cesaro S., Maschmeyer G., Einsele H., Donnelly J.P. et al., 2016. Journal of Antimicrobial Chemotherapy, 71 (9) pp. 2386-2396. Peer-reviewed.
 
Ecological strategies in stable and disturbed environments depend on species specialisation
Buchi L., Vuilleumier S., 2016. Oikos, 125 (10) pp. 1408-1420.
EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J., Kreis J., Spänig S., Juhre T., Bertelli C., Ernst C., Goesmann A., 2016. Nucleic Acids Research, 44 (W1) pp. W22-W28. Peer-reviewed.
Editorial: Advances in Aspergillus fumigatus Pathobiology.
Lamoth F., Juvvadi P.R., Steinbach W.J., 2016. Frontiers In Microbiology, 7 p. 43. Peer-reviewed.
 
Effect of Parachlamydia acanthamoebae on pulmonary function parameters in a bovine respiratory model.
Lohr M., Prohl A., Ostermann C., Diller R., Greub G., Reinhold P., 2016. Veterinary Journal, 213 pp. 9-15. Peer-reviewed.
Emerging bacterial pathogens: the past and beyond.
Vouga M., Greub G., 2016. Clinical Microbiology and Infection, 22 (1) pp. 12-21.
 
Emerging Role of Zika Virus in Adverse Fetal and Neonatal Outcomes.
Panchaud A., Stojanov M., Ammerdorffer A., Vouga M., Baud D., 2016. Clinical Microbiology Reviews, 29 (3) pp. 659-694. Peer-reviewed.
Emerging Threats in Antifungal-Resistant Fungal Pathogens.
Sanglard D., 2016. Frontiers In Medicine, 3 p. 11. Peer-reviewed.
Galactomannan and 1,3-β-d-Glucan Testing for the Diagnosis of Invasive Aspergillosis
Lamoth Frédéric, 2016. Journal of Fungi, 2 (3) p. 22.
Genome Sequences of Listeria monocytogenes Strains Responsible for Cheese- and Cooked Ham Product-Associated Swiss Listeriosis Outbreaks in 2005 and 2011.
Tasara T., Klumpp J., Bille J., Stephan R., 2016. Genome Announcements, 4 (2) pp. e00106-16. Peer-reviewed.
 
Guanylate Binding Protein (GBP) 5 Is an Interferon-Inducible Inhibitor of HIV-1 Infectivity.
Krapp C., Hotter D., Gawanbacht A., McLaren P.J., Kluge S.F., Stürzel C.M., Mack K., Reith E., Engelhart S., Ciuffi A. et al., 2016. Cell Host and Microbe, 19 (4) pp. 504-514. Peer-reviewed.
Hand soap contamination by Pseudomonas aeruginosa in a tertiary care hospital: no evidence of impact on patients.
Blanc D.S., Gomes Magalhaes B., Abdelbary M., Prod'hom G., Greub G., Wasserfallen J.B., Genoud P., Zanetti G., Senn L., 2016. Journal of Hospital Infection, 93 (1) pp. 63-67. Peer-reviewed.
 
Heat shock protein 90 (Hsp90): A novel antifungal target against Aspergillus fumigatus.
Lamoth F., Juvvadi P.R., Steinbach W.J., 2016. Critical reviews in microbiology, 42 (2) pp. 310-321. Peer-reviewed.
 
Identification of Triterpenoids from Schefflera systyla, Odontadenia puncticulosa and Conostegia speciosa and In Depth Investigation of Their in vitro and in vivo Antifungal Activities
Favre-Godal Quentin, Dorsaz Stephane, Marcourt Laurence, Bertini Valentina, Dormia Emmanuelle, Michellod Emilie, Voinesco Francine, Gupta Mahabir, Gindro Katia, Sanglard Dominique et al., 2016. Journal of the Brazilian Chemical Society, 28 (3) pp. 443-454 . Peer-reviewed.
 
Imaging of congenital Zika virus infection: the route to identification of prognostic factors.
Vouga M., Baud D., 2016. Prenatal Diagnosis, 36 (9) pp. 799-811. Peer-reviewed.
Inhibiting fungal multidrug resistance by disrupting an activator-Mediator interaction.
Nishikawa J.L., Boeszoermenyi A., Vale-Silva L.A., Torelli R., Posteraro B., Sohn Y.J., Ji F., Gelev V., Sanglard D., Sanguinetti M. et al., 2016. Nature, 530 (7591) pp. 485-489. Peer-reviewed.
 
Mechanism of Folding and Activation of Subtilisin Kexin Isozyme-1 (SKI-1)/Site-1 Protease (S1P).
da Palma J.R., Cendron L., Seidah N.G., Pasquato A., Kunz S., 2016. Journal of Biological Chemistry, 291 (5) pp. 2055-2066. Peer-reviewed.
Molecular and Mass Spectrometry Detection and Identification of Causative Agents of Bloodstream Infections
Opota Onya, Jaton Katia, Prod'hom Guy, Greub Gilbert, 2016. pp. 336-361 dans David Persing, Fred Tenover, Randall Hayden, Margareta Leven (eds.) Molecular Microbiology chap. 26, American Society of Microbiology.
Mouse Model of Respiratory Tract Infection Induced by Waddlia chondrophila.
Pilloux L., LeRoy D., Brunel C., Roger T., Greub G., 2016. Plos One, 11 (3) pp. e0150909. Peer-reviewed.
 
Novel drug discovery approaches for treating arenavirus infections.
Pasquato A., Kunz S., 2016. Expert opinion on drug discovery, 11 (4) pp. 383-393. Peer-reviewed.
 
Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients.
Cordonnier C., Cesaro S., Maschmeyer G., Einsele H., Donnelly J.P., Alanio A., Hauser P.M., Lagrou K., Melchers W.J., Helweg-Larsen J. et al., 2016. Journal of Antimicrobial Chemotherapy, 71 (9) pp. 2379-2385. Peer-reviewed.
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