Centre intégratif de génomique

Equipe principale | CIG Services communs | Groupe Benton | Groupe Fajas | Groupe Fankhauser | Groupe Franken | Groupe Gambetta | Groupe Gatfield | Groupe Larsch | Groupe Michalik | Groupe Reymond | Groupe Roignant | Groupe van Leeuwen | Groupe Vastenhouw | Groupe Vjestica | Plateforme de biostatistique | Plateforme Genomics Technologies Facility (GTF) | Plateforme Protein Analysis Facility (PAF)
Publications | Mémoires et thèses

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1739 publications

... | 2021 | 2020 | 2019 | ...
2021
Noradrenergic circuit control of non-REM sleep substates.
Osorio-Forero A., Cardis R., Vantomme G., Guillaume-Gentil A., Katsioudi G., Devenoges C., Fernandez LMJ, Lüthi A., 2021/11/22. Current biology, 31 (22) pp. 5009-5023.e7. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F481395A28B9]
 
Live-imaging of Mitochondrial System in Cultured Astrocytes.
Espourteille J., Zufferey V., Laurent J.H., Richetin K., 2021/11/16. Journal of visualized experiments p. 177. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AE29DF521E48]
Biallelic truncation variants in ATP9A are associated with a novel autosomal recessive neurodevelopmental disorder.
Mattioli F., Darvish H., Paracha S.A., Tafakhori A., Firouzabadi S.G., Chapi M., Baig HMA, Reymond A., Antonarakis S.E., Ansar M., 2021/11/11. NPJ genomic medicine, 6 (1) p. 94. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A441A84FD79F]
Médecine personnalisée et prévention des maladies chroniques - Besoins, perceptions et attentes des patients et des médecins généralistes [Personalized medicine and chronic disease prevention: Needs, attitudes and expectations regarding in general practice]
Cohidon C., Desvergne B., Widmer D., Cerqui D., Guessous I., Cornuz J., 2021/11/10. Revue medicale suisse, 17 (758) pp. 1939-1942. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_9FB9E5D0E9E5]
Architecture and plasticity: optimizing plant performance in dynamic environments.
Pierik R., Fankhauser C., Strader L.C., Sinha N., 2021/11/03. Plant physiology, 187 (3) pp. 1029-1032. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CAFB7A7B28A3]
Meristem transitions and plant architecture-learning from domestication for crop breeding.
Gaarslev N., Swinnen G., Soyk S., 2021/11/03. Plant physiology, 187 (3) pp. 1045-1056. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CD5674CEC8F4]
Phototropin-mediated perception of light direction in leaves regulates blade flattening.
Legris M., Szarzynska-Erden B.M., Trevisan M., Allenbach Petrolati L., Fankhauser C., 2021/11/03. Plant physiology, 187 (3) pp. 1235-1249. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4245FAE816B5]
 
Ablation of glucokinase-expressing tanycytes impacts energy balance and increases adiposity in mice.
Rohrbach A., Caron E., Dali R., Brunner M., Pasquettaz R., Kolotuev I., Santoni F., Thorens B., Langlet F., 2021/11. Molecular metabolism, 53 p. 101311. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_569B8719E376]
 
Ablation of glucokinase-expressing tanycytes impacts energy balance and increases adiposity in mice.
Rohrbach A., Caron E., Dali R., Brunner M., Pasquettaz R., Kolotuev I., Santoni F., Thorens B., Langlet F., 2021/11. Molecular metabolism, 53 p. 101311. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FB786377EBF6]
 
Distinct Molecular Signatures of Clinical Clusters in People With Type 2 Diabetes: An IMI-RHAPSODY Study.
Slieker R.C., Donnelly L.A., Fitipaldi H., Bouland G.A., Giordano G.N., Åkerlund M., Gerl M.J., Ahlqvist E., Ali A., Dragan I. et al., 2021/11. Diabetes, 70 (11) pp. 2683-2693. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A3ADFE199CED]
 
Osteoprotegerin regulates vascular function through syndecan-1 and NADPH oxidase-derived reactive oxygen species.
Alves-Lopes R., Neves K.B., Strembitska A., Harvey A.P., Harvey K.Y., Yusuf H., Haniford S., Hepburn R.T., Dyet J., Beattie W. et al., 2021/10/29. Clinical science, 135 (20) pp. 2429-2444. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A4B17203CF47]
 
Glucokinase neurons of the paraventricular nucleus of the thalamus sense glucose and decrease food consumption.
Kessler S., Labouèbe G., Croizier S., Gaspari S., Tarussio D., Thorens B., 2021/10/22. iScience, 24 (10) p. 103122. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6A809E6725D3]
Molecular reconstruction of recurrent evolutionary switching in olfactory receptor specificity.
Prieto-Godino L.L., Schmidt H.R., Benton R., 2021/10/22. eLife, 10 pp. e69732. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2767EC0E3ABA]
Projet GenPerso : Santé personnalisée et prévention des maladies chroniques : besoins, perceptions et attentes des patients et des médecins généralistes
Cardinaux Regula, Cerqui Daniela, Chenal Robin, Cohidon Christine, Cornuz Jacques, Desvergne Béatrice, Guessous Idris, Widmer Daniel, 2021/10/05. (322) 66 [Raisons de santé ; 322], Centre universitaire de médecine générale et santé publique (Unisanté).
[URN][DOI][serval:BIB_D63D8B56B0E0]
 
Mike Mueckler (1953-2021): the father of the mammalian SLC2 glucose transporter family.
James D.E., Thorens B., 2021/10/01. American journal of physiology. Endocrinology and metabolism, 321 (4) pp. E490-E492. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_95870970FB85]
 
β-Amyrin Synthase1 Controls the Accumulation of the Major Saponins Present in Pea (Pisum sativum).
Vernoud V., Lebeigle L., Munier J., Marais J., Sanchez M., Pertuit D., Rossin N., Darchy B., Aubert G., Le Signor C. et al., 2021/10/01. Plant & cell physiology, 62 (5) pp. 784-797. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A9F919BCE457]
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
Rossier V., Warwick Vesztrocy A., Robinson-Rechavi M., Dessimoz C., 2021/09/29. Bioinformatics, 37 (18) pp. 2866-2873. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E9D32F404F19]
Epigenetic remodelling of enhancers in response to estrogen deprivation and re-stimulation.
Sklias A., Halaburkova A., Vanzan L., Jimenez N.F., Cuenin C., Bouaoun L., Cahais V., Ythier V., Sallé A., Renard C. et al., 2021/09/27. Nucleic acids research, 49 (17) pp. 9738-9754. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_11D96B18BFB9]
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
Porcu E., Sadler M.C., Lepik K., Auwerx C., Wood A.R., Weihs A., Sleiman MSB, Ribeiro D.M., Bandinelli S., Tanaka T. et al., 2021/09/24. Nature communications, 12 (1) p. 5647. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_253FEBED3C3F]
 
Novel Approach Combining Transcriptional and Evolutionary Signatures to Identify New Multiciliation Genes.
Defosset A., Merlat D., Poidevin L., Nevers Y., Kress A., Poch O., Lecompte O., 2021/09/21. Genes, 12 (9) p. 1452. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F7D3952B2536]
Circular RNA repertoires are associated with evolutionarily young transposable elements.
Gruhl F., Janich P., Kaessmann H., Gatfield D., 2021/09/20. eLife, 10 pp. e67991. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81B4CC087DBB]
Sex Dimorphism of Nonalcoholic Fatty Liver Disease (NAFLD) in Pparg-Null Mice.
Schiffrin M., Winkler C., Quignodon L., Naldi A., Trötzmüller M., Köfeler H., Henry H., Parini P., Desvergne B., Gilardi F., 2021/09/15. International journal of molecular sciences, 22 (18) p. 9969. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_978B8840BE0C]
Variants in USP48 encoding ubiquitin hydrolase are associated with autosomal dominant non-syndromic hereditary hearing loss.
Bassani S., van Beelen E., Rossel M., Voisin N., Morgan A., Arribat Y., Chatron N., Chrast J., Cocca M., Delprat B. et al., 2021/09/15. Human molecular genetics, 30 (19) pp. 1785-1796. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1B6DF3F33981]
Composite trait Mendelian randomization reveals distinct metabolic and lifestyle consequences of differences in body shape.
Sulc J., Sonrel A., Mounier N., Auwerx C., Marouli E., Darrous L., Draganski B., Kilpeläinen T.O., Joshi P., Loos RJF et al., 2021/09/13. Communications biology, 4 (1) p. 1064. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_57C949AB27A1]
Détection cérébrale du glucose et homéostasie du glucose
Thorens Bernard, Labouèbe Gwenaël, 2021/09/01. Médecine des Maladies Métaboliques.
[URN][serval:BIB_4DCE16C1F1C5]
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression.
Võsa U., Claringbould A., Westra H.J., Bonder M.J., Deelen P., Zeng B., Kirsten H., Saha A., Kreuzhuber R., Yazar S. et al., 2021/09. Nature genetics, 53 (9) pp. 1300-1310. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9462F2AB5F22]
 
Replication and cross-validation of type 2 diabetes subtypes based on clinical variables: an IMI-RHAPSODY study.
Slieker R.C., Donnelly L.A., Fitipaldi H., Bouland G.A., Giordano G.N., Åkerlund M., Gerl M.J., Ahlqvist E., Ali A., Dragan I. et al., 2021/09. Diabetologia, 64 (9) pp. 1982-1989. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_05148A44E888]
 
Revealing NOTCH-dependencies in synaptic targets associated with Alzheimer's disease.
Perna A., Marathe S., Dreos R., Falquet L., Akarsu Egger H., Auber L.A., 2021/09. Molecular and cellular neurosciences, 115 p. 103657. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2CABA49354C2]
 
m6A RNA methylation regulates promoter- proximal pausing of RNA polymerase II.
Akhtar J., Renaud Y., Albrecht S., Ghavi-Helm Y., Roignant J.Y., Silies M., Junion G., 2021/08/19. Molecular cell, 81 (16) pp. 3356-3367.e6. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A4D00990CF8F]
GDF15 mediates the metabolic effects of PPARβ/δ by activating AMPK.
Aguilar-Recarte D., Barroso E., Gumà A., Pizarro-Delgado J., Peña L., Ruart M., Palomer X., Wahli W., Vázquez-Carrera M., 2021/08/10. Cell reports, 36 (6) p. 109501. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_66044934741B]
The PPARβ/δ-AMPK Connection in the Treatment of Insulin Resistance.
Aguilar-Recarte D., Palomer X., Wahli W., Vázquez-Carrera M., 2021/08/09. International journal of molecular sciences, 22 (16) p. 8555. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_745478D849DF]
Olfactory receptor-dependent receptor repression in Drosophila.
Mika K., Cruchet S., Chai P.C., Prieto-Godino L.L., Auer T.O., Pradervand S., Benton R., 2021/08. Science advances, 7 (32) pp. eabe3745. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9CEC0BBE9EE9]
 
PRF1 mutation alters immune system activation, inflammation, and risk of autoimmunity.
Sidore C., Orrù V., Cocco E., Steri M., Inshaw J.R., Pitzalis M., Mulas A., McGurnaghan S., Frau J., Porcu E. et al., 2021/08. Multiple sclerosis, 27 (9) pp. 1332-1340. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_36EAC4B40963]
Roles of Estrogens in the Healthy and Diseased Oviparous Vertebrate Liver.
Tramunt B., Montagner A., Tan N.S., Gourdy P., Rémignon H., Wahli W., 2021/07/30. Metabolites, 11 (8) p. 502. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_964C6F906846]
 
ISMB/ECCB 2021 proceedings.
Dessimoz C., Przytycka T.M., 2021/07/12. Bioinformatics, 37 (Suppl_1) pp. i7-i8. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_896DE61ACD8B]
Phosphorylation in the Charged Linker Modulates Interactions and Secretion of Hsp90β
Weidenauer Lorenz, Quadroni Manfredo, 2021/07/05. Cells, 10 (7) p. 1701. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_7EBF80ED2EFF]
Enforced PGC-1α expression promotes CD8 T cell fitness, memory formation and antitumor immunity.
Dumauthioz N., Tschumi B., Wenes M., Marti B., Wang H., Franco F., Li W., Lopez-Mejia I.C., Fajas L., Ho P.C. et al., 2021/07. Cellular & molecular immunology, 18 (7) pp. 1761-1771. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D554C59D6F3C]
Fgf15 Neurons of the Dorsomedial Hypothalamus Control Glucagon Secretion and Hepatic Gluconeogenesis.
Picard A., Metref S., Tarussio D., Dolci W., Berney X., Croizier S., Labouebe G., Thorens B., 2021/07. Diabetes, 70 (7) pp. 1443-1457. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6BC81E235D09]
 
Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories towards type 2 diabetes.
Wigger L., Barovic M., Brunner A.D., Marzetta F., Schöniger E., Mehl F., Kipke N., Friedland D., Burdet F., Kessler C. et al., 2021/07. Nature metabolism, 3 (7) pp. 1017-1031. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CE60701C01FB]
 
LRG1 Promotes Metastatic Dissemination of Melanoma through Regulating EGFR/STAT3 Signalling.
Kwan Y.P., Teo MHY, Lim JCW, Tan M.S., Rosellinny G., Wahli W., Wang X., 2021/06/30. Cancers, 13 (13) p. 3279. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_51606C2A9444]
 
Médecine personnalisée et prévention des maladies chroniques : l’attitude des médecins généralistes
Cardinaux R., Cohidon C., Guessous I., Chenal R., Widmer D., Cerqui D., Cornuz J., Desvergne B., 2021/06/24. Sante publique, Vol. 33 (1) pp. 121-126. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1691F1582288]
Dissecting and modeling photic and melanopsin effects to predict sleep disturbances induced by irregular light exposure in mice.
Hubbard J., Kobayashi Frisk M., Ruppert E., Tsai J.W., Fuchs F., Robin-Choteau L., Husse J., Calvel L., Eichele G., Franken P. et al., 2021/06/22. Proceedings of the National Academy of Sciences of the United States of America, 118 (25) pp. e2017364118. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_81E06F819425]
Hakai is required for stabilization of core components of the m6A mRNA methylation machinery.
Bawankar P., Lence T., Paolantoni C., Haussmann I.U., Kazlauskiene M., Jacob D., Heidelberger J.B., Richter F.M., Nallasivan M.P., Morin V. et al., 2021/06/18. Nature communications, 12 (1) p. 3778. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0C803938C71]
Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.
Bhatt P.R., Scaiola A., Loughran G., Leibundgut M., Kratzel A., Meurs R., Dreos R., O'Connor K.M., McMillan A., Bode J.W. et al., 2021/06/18. Science, 372 (6548) pp. 1306-1313. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AA30EA09AC1E]
I(nsp1)ecting SARS-CoV-2-ribosome interactions.
Simeoni M., Cavinato T., Rodriguez D., Gatfield D., 2021/06/10. Communications biology, 4 (1) p. 715. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AE1D3DB18448]
 
Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans.
Lee D., Zdraljevic S., Stevens L., Wang Y., Tanny R.E., Crombie T.A., Cook D.E., Webster A.K., Chirakar R., Baugh L.R. et al., 2021/06. Nature ecology & evolution, 5 (6) pp. 794-807. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7BBCFCACC6A2]
 
Closing the protein gap in plant chronobiology.
Mehta D., Krahmer J., Uhrig R.G., 2021/06. The Plant journal, 106 (6) pp. 1509-1522. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_88DB3DF00313]
 
Cold-induced dishabituation in rodents exposed to recurrent hypoglycaemia.
Vickneson K., Blackburn J., Gallagher J.R., Evans M.L., de Galan B.E., Pedersen-Bjergaard U., Thorens B., McNeilly A.D., McCrimmon R.J., 2021/06. Diabetologia, 64 (6) pp. 1436-1441. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D425FAD2417A]
The multifaceted role of cell cycle regulators in the coordination of growth and metabolism.
Huber K., Mestres-Arenas A., Fajas L., Leal-Esteban L.C., 2021/06. The FEBS journal, 288 (12) pp. 3813-3833. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71F450E7C4FC]
 
What is the physiological role of hypothalamic tanycytes in metabolism?
Bolborea M., Langlet F., 2021/06/01. American journal of physiology. Regulatory, integrative and comparative physiology, 320 (6) pp. R994-R1003. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1FBCFCE4FB55]
 
3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
Hoencamp C., Dudchenko O., Elbatsh AMO, Brahmachari S., Raaijmakers J.A., van Schaik T., Sedeño Cacciatore Á., Contessoto V.G., van Heesbeen RGHP, van den Broek B. et al., 2021/05/28. Science, 372 (6545) pp. 984-989. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F39016606761]
 
Variants in the degron of AFF3 are associated with intellectual disability, mesomelic dysplasia, horseshoe kidney, and epileptic encephalopathy.
Voisin N., Schnur R.E., Douzgou S., Hiatt S.M., Rustad C.F., Brown N.J., Earl D.L., Keren B., Levchenko O., Geuer S. et al., 2021/05/06. American journal of human genetics, 108 (5) pp. 857-873. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A61CD673B3D6]
PPARɣ drives IL-33-dependent ILC2 pro-tumoral functions.
Ercolano G., Gomez-Cadena A., Dumauthioz N., Vanoni G., Kreutzfeldt M., Wyss T., Michalik L., Loyon R., Ianaro A., Ho P.C. et al., 2021/05/05. Nature communications, 12 (1) p. 2538. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_976017D4D887]
Whole-genome sequencing analysis of semi-supercentenarians.
Garagnani P., Marquis J., Delledonne M., Pirazzini C., Marasco E., Kwiatkowska K.M., Iannuzzi V., Bacalini M.G., Valsesia A., Carayol J. et al., 2021/05/04. eLife, 10 pp. e57849. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9D4703EE2910]
 
Causal Inference Methods to Integrate Omics and Complex Traits.
Porcu E., Sjaarda J., Lepik K., Carmeli C., Darrous L., Sulc J., Mounier N., Kutalik Z., 2021/05/03. Cold Spring Harbor perspectives in medicine, 11 (5) pp. a040493. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FB7006C4092B]
 
A Sandwich-model experiment with personal response systems on epigenetics: insights into learning gain, student engagement and satisfaction.
Katsioudi G., Kostareli E., 2021/05. FEBS open bio, 11 (5) pp. 1282-1298. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_64876BFDFDD2]
Natural variants suppress mutations in hundreds of essential genes.
Parts L., Batté A., Lopes M., Yuen M.W., Laver M., San Luis B.J., Yue J.X., Pons C., Eray E., Aloy P. et al., 2021/05. Molecular systems biology, 17 (5) pp. e10138. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BE5BF0EA2DDC]
 
Optimized sample selection for cost-efficient long-read population sequencing.
Ranallo-Benavidez T.R., Lemmon Z., Soyk S., Aganezov S., Salerno W.J., McCoy R.C., Lippman Z.B., Schatz M.C., Sedlazeck F.J., 2021/05. Genome research, 31 (5) pp. 910-918. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9450E1C359BB]
PPARs and Tumor Microenvironment: The Emerging Roles of the Metabolic Master Regulators in Tumor Stromal-Epithelial Crosstalk and Carcinogenesis.
Cheng H.S., Yip Y.S., Lim EKY, Wahli W., Tan N.S., 2021/04/29. Cancers, 13 (9) p. 2153. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0A60F71C7E33]
May direct-to-consumer genetic testing have an impact on general practitioners' daily practice? a cross-sectional study of patients' intentions towards this approach.
Cohidon C., Cardinaux R., Cornuz J., Chenal R., Desvergne B., Guessous I., Cerqui D., Widmer D., 2021/04/26. BMC family practice, 22 (1) p. 79. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4DF387F824B9]
The pregnane X receptor drives sexually dimorphic hepatic changes in lipid and xenobiotic metabolism in response to gut microbiota in mice.
Barretto S.A., Lasserre F., Huillet M., Régnier M., Polizzi A., Lippi Y., Fougerat A., Person E., Bruel S., Bétoulières C. et al., 2021/04/20. Microbiome, 9 (1) p. 93. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BC662F439698]
Low expression of the PPARγ-regulated gene thioredoxin-interacting protein accompanies human melanoma progression and promotes experimental lung metastases.
Meylan P., Pich C., Winkler C., Ginster S., Mury L., Sgandurra M., Dreos R., Frederick D.T., Hammond M., Boland G.M. et al., 2021/04/12. Scientific reports, 11 (1) p. 7847. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E6198EE2A6D0]
 
Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass.
Krahmer J., Abbas A., Mengin V., Ishihara H., Romanowski A., Furniss J.J., Moraes T.A., Krohn N., Annunziata M.G., Feil R. et al., 2021/04/02. Journal of experimental botany, 72 (8) pp. 3263-3278. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7C212A01F05B]
 
Anything but Ordinary - Emerging Splicing Mechanisms in Eukaryotic Gene Regulation.
Gehring N.H., Roignant J.Y., 2021/04. Trends in genetics, 37 (4) pp. 355-372. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E154CCF2414B]
 
Ophthalmic phenotypes associated with biallelic loss-of-function PCDH12 variants.
Mattioli F., Voisin N., Preikšaitienė E., Kozlovskaja I., Kučinskas V., Reymond A., 2021/04. American journal of medical genetics. Part A, 185 (4) pp. 1275-1281. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B93FEF5A7F21]
 
Projections from the dorsomedial division of the bed nucleus of the stria terminalis to hypothalamic nuclei in the mouse.
Barbier M., González J.A., Houdayer C., Burdakov D., Risold P.Y., Croizier S., 2021/04/01. The Journal of comparative neurology, 529 (5) pp. 929-956. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3FC0253C2880]
Triangulating evidence from longitudinal and Mendelian randomization studies of metabolomic biomarkers for type 2 diabetes.
Porcu E., Gilardi F., Darrous L., Yengo L., Bararpour N., Gasser M., Marques-Vidal P., Froguel P., Waeber G., Thomas A. et al., 2021/03/18. Scientific reports, 11 (1) p. 6197. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_31003871533C]
DBnorm as an R package for the comparison and selection of appropriate statistical methods for batch effect correction in metabolomic studies.
Bararpour N., Gilardi F., Carmeli C., Sidibe J., Ivanisevic J., Caputo T., Augsburger M., Grabherr S., Desvergne B., Guex N. et al., 2021/03/11. Scientific reports, 11 (1) p. 5657. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C00E7D1EAE17]
Sub-minute prediction of brain temperature based on sleep-wake state in the mouse.
Sela Y., Hoekstra M.M., Franken P., 2021/03/08. eLife, 10 pp. e62073. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_47C4B87EDABE]
Targeted molecular profiling of rare olfactory sensory neurons identifies fate, wiring, and functional determinants.
Arguello J.R., Abuin L., Armida J., Mika K., Chai P.C., Benton R., 2021/03/05. eLife, 10 pp. e63036. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C8411F5FDCB5]
Circadian hepatocyte clocks keep synchrony in the absence of a master pacemaker in the suprachiasmatic nucleus or other extrahepatic clocks.
Sinturel F., Gos P., Petrenko V., Hagedorn C., Kreppel F., Storch K.F., Knutti D., Liani A., Weitz C., Emmenegger Y. et al., 2021/03/01. Genes & development, 35 (5-6) pp. 329-334. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2838A72DA401]
Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism.
Zajac N., Zoller S., Seppälä K., Moi D., Dessimoz C., Jokela J., Hartikainen H., Glover N., 2021/03/01. Genome biology and evolution, 13 (3) pp. evab010. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_37EBF9C1AD84]
 
Transcription organizes euchromatin via microphase separation.
Hilbert L., Sato Y., Kuznetsova K., Bianucci T., Kimura H., Jülicher F., Honigmann A., Zaburdaev V., Vastenhouw N.L., 2021/03/01. Nature communications, 12 (1) p. 1360. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6C31278C4B11]
 
Want to track pandemic variants faster? Fix the bioinformatics bottleneck.
Hodcroft E.B., De Maio N., Lanfear R., MacCannell D.R., Minh B.Q., Schmidt H.A., Stamatakis A., Goldman N., Dessimoz C., 2021/03. Nature, 591 (7848) pp. 30-33.
[DOI][Pmid][serval:BIB_6A5FAF35CECE]
NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination.
Werner S., Galliot A., Pichot F., Kemmer T., Marchand V., Sednev M.V., Lence T., Roignant J.Y., König J., Höbartner C. et al., 2021/02/26. Nucleic acids research, 49 (4) pp. e23. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3CBA60432C31]
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila.
Worpenberg L., Paolantoni C., Longhi S., Mulorz M.M., Lence T., Wessels H.H., Dassi E., Aiello G., Sutandy FXR, Scheibe M. et al., 2021/02/15. The EMBO journal, 40 (4) pp. e104975. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F8F35D8782DA]
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.
Kaushal A., Mohana G., Dorier J., Özdemir I., Omer A., Cousin P., Semenova A., Taschner M., Dergai O., Marzetta F. et al., 2021/02/12. Nature communications, 12 (1) p. 1011. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6E8BCA9FDAE9]
Gene regulation contributes to explain the impact of early life socioeconomic disadvantage on adult inflammatory levels in two cohort studies.
Carmeli C., Kutalik Z., Mishra P.P., Porcu E., Delpierre C., Delaneau O., Kelly-Irving M., Bochud M., Dhayat N.A., Ponte B. et al., 2021/02/04. Scientific reports, 11 (1) p. 3100. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_39953DE1C692]
 
Mutation-specific pathophysiological mechanisms define different neurodevelopmental disorders associated with SATB1 dysfunction.
den Hoed J., de Boer E., Voisin N., Dingemans AJM, Guex N., Wiel L., Nellaker C., Amudhavalli S.M., Banka S., Bena F.S. et al., 2021/02/04. American journal of human genetics, 108 (2) pp. 346-356. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0EBEF17D8EA2]
 
Jasmonate biosynthesis arising from altered cell walls is prompted by turgor-driven mechanical compression.
Mielke S., Zimmer M., Meena M.K., Dreos R., Stellmach H., Hause B., Voiniciuc C., Gasperini D., 2021/02. Science advances, 7 (7) pp. eabf0356. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_970A9781E34B]
 
Peculiar protrusions along tanycyte processes face diverse neural and nonneural cell types in the hypothalamic parenchyma.
Pasquettaz R., Kolotuev I., Rohrbach A., Gouelle C., Pellerin L., Langlet F., 2021/02. The Journal of comparative neurology, 529 (3) pp. 553-575. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4680A78D988E]
 
Robust and sensitive peptidomics workflow for plasma based on specific extraction, lipid removal, capillary LC setup and multinozzle ESI emitter.
Rochat B., Waridel P., Barblan J., Sottas P.E., Quadroni M., 2021/02/01. Talanta, 223 (Pt 1) p. 121617. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B6EB05E6B898]
Translation is required for miRNA-dependent decay of endogenous transcripts.
Biasini A., Abdulkarim B., de Pretis S., Tan J.Y., Arora R., Wischnewski H., Dreos R., Pelizzola M., Ciaudo C., Marques A.C., 2021/02/01. The EMBO journal, 40 (3) pp. e104569. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1E9949CC6BEE]
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Altenhoff A.M., Train C.M., Gilbert K.J., Mediratta I., Mendes de Farias T., Moi D., Nevers Y., Radoykova H.S., Rossier V., Warwick Vesztrocy A. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D373-D379. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A827EF929B38]
 
Rare and de novo coding variants in chromodomain genes in Chiari I malformation.
Sadler B., Wilborn J., Antunes L., Kuensting T., Hale A.T., Gannon S.R., McCall K., Cruchaga C., Harms M., Voisin N. et al., 2021/01/07. American journal of human genetics, 108 (1) pp. 100-114. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E66400D1F906]
 
Analysis of Shade-Induced Hypocotyl Elongation in Arabidopsis
Ince Yetkin Çaka, Galvão Vinicius Costa, 2021. pp. 21-31 dans Plant Photomorphogenesis, Springer US.
[DOI][WoS][Pmid][serval:BIB_219DE672BF4F]
Anti-adipogenic signals at the onset of obesity-related inflammation in white adipose tissue.
Caputo T., Tran VDT, Bararpour N., Winkler C., Aguileta G., Trang KB, Giordano Attianese GMP, Wilson A., Thomas A., Pagni M. et al., 2021/01. Cellular and molecular life sciences, 78 (1) pp. 227-247. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_713DAFDC1C95]
Bacterial Hsp90 Facilitates the Degradation of Aggregation-Prone Hsp70-Hsp40 Substrates.
Fauvet B., Finka A., Castanié-Cornet M.P., Cirinesi A.M., Genevaux P., Quadroni M., Goloubinoff P., 2021. Frontiers in molecular biosciences, 8 p. 653073. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8309C13E8954]
Invalidation of the Transcriptional Modulator of Lipid Metabolism PPARβ/δ in T Cells Prevents Age-Related Alteration of Body Composition and Loss of Endurance Capacity.
Rousseau A.S., Murdaca J., Le Menn G., Sibille B., Wahli W., Le Garf S., Chinetti G., Neels J.G., Mothe-Satney I., 2021. Frontiers in physiology, 12 p. 587753. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EEA1B5397CAF]
Lack of Adiponectin Drives Hyperosteoclastogenesis in Lipoatrophic Mice.
Madel M.B., Fu H., Pierroz D.D., Schiffrin M., Winkler C., Wilson A., Pochon C., Toffoli B., Taïeb M., Jouzeau J.Y. et al., 2021. Frontiers in cell and developmental biology, 9 p. 627153. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CB73EF97C8A9]
Olfactory Receptor Gene Regulation in Insects: Multiple Mechanisms for Singular Expression.
Mika K., Benton R., 2021. Frontiers in neuroscience, 15 p. 738088. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_21813417D0E8]
 
Ontogeny of the Projections From the Dorsomedial Division of the Anterior Bed Nucleus of the Stria Terminalis to Hypothalamic Nuclei.
Lanzillo M., Gervais M., Croizier S., 2021. Frontiers in neuroscience, 15 p. 748186. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7EBF7A6F5EB8]
 
Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies.
Munn-Chernoff M.A., Johnson E.C., Chou Y.L., Coleman JRI, Thornton L.M., Walters R.K., Yilmaz Z., Baker J.H., Hübel C., Gordon S. et al., 2021/01. Addiction biology, 26 (1) pp. e12880. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9F7C7C4CB90A]
2020
 
PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling.
Bekkar A., Nasrallah A., Guex N., Fajas L., Xenarios I., Lopez-Mejia I.C., 2020/12/22. Bioinformatics, 36 (20) pp. 5117-5119. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F6B4F7EFAFFB]
Oxidative Stress in NAFLD: Role of Nutrients and Food Contaminants.
Rives C., Fougerat A., Ellero-Simatos S., Loiseau N., Guillou H., Gamet-Payrastre L., Wahli W., 2020/12/21. Biomolecules, 10 (12) p. 1702. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_43548F04D7B4]
Quantitative proteomic analysis to capture the role of heat-accumulated proteins in moss plant acquired thermotolerance.
Guihur A., Fauvet B., Finka A., Quadroni M., Goloubinoff P., 2020/12/21. Plant, cell & environment, 44 (7) pp. 2117-2133. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4641E70C783E]
A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor
Benton R., Dessimoz C., Moi D., 2020/12/04. eLife, 9 pp. e62507.
[URN][DOI][Pmid][serval:BIB_C2A3842B891D]
 
Human shelterin protein POT1 prevents severe telomere instability induced by homology-directed DNA repair.
Glousker G., Briod A.S., Quadroni M., Lingner J., 2020/12/01. The EMBO journal, 39 (23) pp. e104500. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A6E0AC7C0049]
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chong Chloe, Müller Markus, Pak HuiSong, Harnett Dermot, Huber Florian, Grun Delphine, Leleu Marion, Auger Aymeric, Arnaud Marion, Stevenson Brian J. et al., 2020/12. Nature Communications, 11 (1). Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_03EA897A1141]
NineTeen Complex-subunit Salsa is required for efficient splicing of a subset of introns and dorsal-ventral patterning.
Rathore O.S., Silva R.D., Ascensão-Ferreira M., Matos R., Carvalho C., Marques B., Tiago M.N., Prudêncio P., Andrade R.P., Roignant J.Y. et al., 2020/12. RNA, 26 (12) pp. 1935-1956. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A51FB6FD539B]
Persistent or Transient Human β Cell Dysfunction Induced by Metabolic Stress: Specific Signatures and Shared Gene Expression with Type 2 Diabetes.
Marselli L., Piron A., Suleiman M., Colli M.L., Yi X., Khamis A., Carrat G.R., Rutter G.A., Bugliani M., Giusti L. et al., 2020/12/01. Cell reports, 33 (9) p. 108466. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EA019EC4C301]
Transcriptome and translatome co-evolution in mammals.
Wang Z.Y., Leushkin E., Liechti A., Ovchinnikova S., Mößinger K., Brüning T., Rummel C., Grützner F., Cardoso-Moreira M., Janich P. et al., 2020/12. Nature, 588 (7839) pp. 642-647. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2233C0F2B0FC]
The Hsp70-Hsp90 co-chaperone Hop/Stip1 shifts the proteostatic balance from folding towards degradation.
Bhattacharya K., Weidenauer L., Luengo T.M., Pieters E.C., Echeverría P.C., Bernasconi L., Wider D., Sadian Y., Koopman M.B., Villemin M. et al., 2020/11/25. Nature communications, 11 (1) p. 5975. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_A3C58F977248]
 
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
Dylus David, Pillonel Trestan, Opota Onya, Wüthrich Daniel, Seth-Smith Helena M. B., Egli Adrian, Leo Stefano, Lazarevic Vladimir, Schrenzel Jacques, Laurent Sacha et al., 2020/11/24. Frontiers in Microbiology, 11. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_347E9A7AF57F]
 
New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation.
Soyk S., Benoit M., Lippman Z.B., 2020/11/23. Annual review of genetics, 54 pp. 287-307. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_737563E17177]
A generalized Robinson-Foulds distance for labeled trees.
Briand S., Dessimoz C., El-Mabrouk N., Lafond M., Lobinska G., 2020/11/18. BMC genomics, 21 (Suppl 10) p. 779. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2A5CE76C7989]
Peroxisome Proliferator-Activated Receptors as Molecular Links between Caloric Restriction and Circadian Rhythm.
Duszka K., Wahli W., 2020/11/12. Nutrients, 12 (11) pp. E3476. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5AACE052697A]
 
Expression Evolution of Ancestral XY Gametologs across All Major Groups of Placental Mammals.
Martínez-Pacheco M., Tenorio M., Almonte L., Fajardo V., Godínez A., Fernández D., Cornejo-Páramo P., Díaz-Barba K., Halbert J., Liechti A. et al., 2020/11/03. Genome biology and evolution, 12 (11) pp. 2015-2028. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_720BBFDCDE8D]
 
EphrinB1 modulates glutamatergic inputs into POMC-expressing progenitors and controls glucose homeostasis.
Gervais M., Labouèbe G., Picard A., Thorens B., Croizier S., 2020/11. PLoS biology, 18 (11) pp. e3000680. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_342F83D79CC2]
Hypoglycemia-Sensing Neurons of the Ventromedial Hypothalamus Require AMPK-Induced Txn2 Expression but Are Dispensable for Physiological Counterregulation.
Quenneville S., Labouèbe G., Basco D., Metref S., Viollet B., Foretz M., Thorens B., 2020/11. Diabetes, 69 (11) pp. 2253-2266. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8D8A4D281085]
Virosaurus A Reference to Explore and Capture Virus Genetic Diversity.
Gleizes A., Laubscher F., Guex N., Iseli C., Junier T., Cordey S., Fellay J., Xenarios I., Kaiser L., Mercier P.L., 2020/11/01. Viruses, 12 (11) pp. E1248. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5E9093826570]
Identification of metabolomics biomarkers for type 2 diabetes: triangulating evidence from longitudinal and Mendelian randomization analyses
Porcu E., Gilardi F., Darrous L., Yengo L., Bararpour N., Gasser M., Vidal PM, Froguel P., Waeber G., Thomas A. et al., 2020/10/30..
[URN][DOI][serval:BIB_9A811092850F]
 
Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction.
Wells D.K., van Buuren M.M., Dang K.K., Hubbard-Lucey V.M., Sheehan KCF, Campbell K.M., Lamb A., Ward J.P., Sidney J., Blazquez A.B. et al., 2020/10/29. Cell, 183 (3) pp. 818-834.e13. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F6095670EC38]
PPARs and Microbiota in Skeletal Muscle Health and Wasting.
Manickam R., Duszka K., Wahli W., 2020/10/29. International journal of molecular sciences, 21 (21) pp. E8056. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8144A5A3DE48]
 
Enhanced Retrieval of Taste Associative Memory by Chemogenetic Activation of Locus Coeruleus Norepinephrine Neurons.
Fukabori R., Iguchi Y., Kato S., Takahashi K., Eifuku S., Tsuji S., Hazama A., Uchigashima M., Watanabe M., Mizuma H. et al., 2020/10/21. The Journal of neuroscience, 40 (43) pp. 8367-8385. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1657AE3E1538]
 
Readthrough of stop codons under limiting ABCE1 concentration involves frameshifting and inhibits nonsense-mediated mRNA decay.
Annibaldis G., Domanski M., Dreos R., Contu L., Carl S., Kläy N., Mühlemann O., 2020/10/09. Nucleic acids research, 48 (18) pp. 10259-10279. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_52D22787E24C]
Mechanistic definition of the cardiovascular mPGES-1/COX-2/ADMA axis.
Kirkby N.S., Raouf J., Ahmetaj-Shala B., Liu B., Mazi S.I., Edin M.L., Chambers M.G., Korotkova M., Wang X., Wahli W. et al., 2020/10/01. Cardiovascular research, 116 (12) pp. 1972-1980. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D291322BFEBC]
Molecular mechanisms of olfactory detection in insects: beyond receptors.
Schmidt H.R., Benton R., 2020/10. Open biology, 10 (10) p. 200252. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0E355E8D256B]
 
Neuropilin-1 expression in GnRH neurons regulates prepubertal weight gain and sexual attraction.
Vanacker C., Trova S., Shruti S., Casoni F., Messina A., Croizier S., Malone S., Ternier G., Hanchate N.K., Rasika S. et al., 2020/10/01. The EMBO journal, 39 (19) pp. e104633. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_42A6F083D6D2]
 
Parallel and Scalable Precise Clustering
Byma Stuart, Dhasade Akash, Altenhoff Adrian, Dessimoz Christophe, Larus James R., 2020/09/30. dans Proceedings of the ACM International Conference on Parallel Architectures and Compilation Techniques, ACM.
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Tumor regression and resistance mechanisms upon CDK4 and RAF1 inactivation in KRAS/P53 mutant lung adenocarcinomas.
Esteban-Burgos L., Wang H., Nieto P., Zheng J., Blanco-Aparicio C., Varela C., Gómez-López G., Fernández-García F., Sanclemente M., Guerra C. et al., 2020/09/29. Proceedings of the National Academy of Sciences of the United States of America, 117 (39) pp. 24415-24426. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_05519E55AA11]
 
Hypothalamic CDK4 regulates thermogenesis by modulating sympathetic innervation of adipose tissues.
Castillo-Armengol J., Barquissau V., Geller S., Ji H., Severi I., Venema W., Fenandez E.A., Moret C., Huber K., Leal-Esteban L.C. et al., 2020/09/03. EMBO reports, 21 (9) pp. e49807. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BA842E7BA291]
 
Deficiency in fibroblast PPARβ/δ reduces nonmelanoma skin cancers in mice.
Tan MWY, Sng M.K., Cheng H.S., Low Z.S., Leong BJJ, Chua D., Tan EHP, Chan JSK, Yip Y.S., Lee Y.H. et al., 2020/09. Cell death and differentiation, 27 (9) pp. 2668-2680. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C09E5218BD1D]
Systematic analysis of bypass suppression of essential genes.
van Leeuwen J., Pons C., Tan G., Wang J.Z., Hou J., Weile J., Gebbia M., Liang W., Shuteriqi E., Li Z. et al., 2020/09. Molecular systems biology, 16 (9) pp. e9828. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E6E9FA206068]
 
The phylogenetic range of bacterial and viral pathogens of vertebrates.
Shaw L.P., Wang A.D., Dylus D., Meier M., Pogacnik G., Dessimoz C., Balloux F., 2020/09. Molecular ecology, 29 (17) pp. 3361-3379. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_70C79EA22DA5]
 
A de novo 13q31.3 microduplication encompassing the miR-17 ~ 92 cluster results in features mirroring those associated with Feingold syndrome 2.
Siavrienė E., Preikšaitienė E., Maldžienė Ž., Mikštienė V., Rančelis T., Ambrozaitytė L., Gueneau L., Reymond A., Kučinskas V., 2020/08/30. Gene, 753 p. 144816. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_017FC4960245]
Human NMD ensues independently of stable ribosome stalling.
Karousis E.D., Gurzeler L.A., Annibaldis G., Dreos R., Mühlemann O., 2020/08/17. Nature communications, 11 (1) p. 4134. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2EB67EC06977]
 
De Novo and Bi-allelic Pathogenic Variants in NARS1 Cause Neurodevelopmental Delay Due to Toxic Gain-of-Function and Partial Loss-of-Function Effects.
Manole A., Efthymiou S., O'Connor E., Mendes M.I., Jennings M., Maroofian R., Davagnanam I., Mankad K., Lopez M.R., Salpietro V. et al., 2020/08/06. American journal of human genetics, 107 (2) pp. 311-324. Peer-reviewed.
[DOI][Pmid][serval:BIB_C9F64A97AE52]
TReND in Africa: Toward a Truly Global (Neuro)science Community.
Baden T., Maina M.B., Maia Chagas A., Mohammed Y.G., Auer T.O., Silbering A., von Tobel L., Pertin M., Hartig R., Aleksic J. et al., 2020/08/05. Neuron, 107 (3) pp. 412-416. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_570318699F0E]
 
Low Blue Light Enhances Phototropism by Releasing Cryptochrome1-Mediated Inhibition of PIF4 Expression.
Boccaccini A., Legris M., Krahmer J., Allenbach-Petrolati L., Goyal A., Galvan-Ampudia C., Vernoux T., Karayekov E., Casal J.J., Fankhauser C., 2020/08. Plant physiology, 183 (4) pp. 1780-1793. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FE090E44B17B]
Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence.
Zile K., Dessimoz C., Wurm Y., Masel J., 2020/08/01. Genome biology and evolution, 12 (8) pp. 1355-1366. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FE830F452AA4]
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore Jill E., Purcaro Michael J., Pratt Henry E., Epstein Charles B., Shoresh Noam, Adrian Jessika, Kawli Trupti, Davis Carrie A., Dobin Alexander, Kaul Rajinder et al., 2020/07/30. Nature, 583 (7818) pp. 699-710.
[URN][DOI][WoS][Pmid][serval:BIB_4061F4C51B0F]
Perspectives on ENCODE
Snyder Michael P., Gingeras Thomas R., Moore Jill E., Weng Zhiping, Gerstein Mark B., Ren Bing, Hardison Ross C., Stamatoyannopoulos John A., Graveley Brenton R., Feingold Elise A. et al., 2020/07/30. Nature, 583 (7818) pp. 693-698.
[URN][DOI][WoS][Pmid][serval:BIB_0CCC50FF7936]
MAF1 is a chronic repressor of RNA polymerase III transcription in the mouse.
Bonhoure N., Praz V., Moir R.D., Willemin G., Mange F., Moret C., Willis I.M., Hernandez N., 2020/07/20. Scientific reports, 10 (1) p. 11956. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_66A30385CDCC]
Peroxisome Proliferator-Activated Receptors and Caloric Restriction-Common Pathways Affecting Metabolism, Health, and Longevity.
Duszka K., Gregor A., Guillou H., König J., Wahli W., 2020/07/16. Cells, 9 (7) p. 1708. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_AD05FD7F401A]
The Constitutive Lack of α7 Nicotinic Receptor Leads to Metabolic Disorders in Mouse.
Gausserès B., Liu J., Foppen E., Tourrel-Cuzin C., Rodriguez Sanchez-Archidona A., Delangre E., Cruciani-Guglielmacci C., Pons S., Maskos U., Thorens B. et al., 2020/07/16. Biomolecules, 10 (7) p. 1057. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1E982C7D4533]
Peroxisome Proliferator-Activated Receptors and Their Novel Ligands as Candidates for the Treatment of Non-Alcoholic Fatty Liver Disease.
Fougerat A., Montagner A., Loiseau N., Guillou H., Wahli W., 2020/07/08. Cells, 9 (7). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AB6F70A96153]
The Quest for Orthologs benchmark service and consensus calls in 2020.
Altenhoff A.M., Garrayo-Ventas J., Cosentino S., Emms D., Glover N.M., Hernández-Plaza A., Nevers Y., Sundesha V., Szklarczyk D., Fernández J.M. et al., 2020/07/02. Nucleic acids research, 48 (W1) pp. W538-W545. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EBF2C2C4065D]
 
A genetic screen identifies Crat as a regulator of pancreatic beta-cell insulin secretion.
Berdous D., Berney X., Sanchez-Archidona A.R., Jan M., Roujeau C., Lopez-Mejia I.C., Mynatt R., Thorens B., 2020/07. Molecular metabolism, 37 p. 100993. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E7C44B7C6874]
Benchmarking gene ontology function predictions using negative annotations.
Warwick Vesztrocy A., Dessimoz C., 2020/07/01. Bioinformatics, 36 (Supplement_1) pp. i210-i218. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7AA95FEF6B71]
 
Chronic Stress Potentiates High Fructose-Induced Lipogenesis in Rat Liver and Kidney.
Milutinović D.V., Brkljačić J., Teofilović A., Bursać B., Nikolić M., Gligorovska L., Kovačević S., Djordjevic A., Preitner F., Tappy L. et al., 2020/07. Molecular nutrition & food research, 64 (13) pp. e1901141. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ABC67ED9C086]
RNA polymerase III transcription as a disease factor.
Yeganeh M., Hernandez N., 2020/07/01. Genes & development, 34 (13-14) pp. 865-882. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_05D97F79A5F4]
Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes.
Moi D., Kilchoer L., Aguilar P.S., Dessimoz C., 2020/07. PLoS computational biology, 16 (7) pp. e1007553. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_06AA547BD763]
Stem phototropism toward blue and ultraviolet light.
Legris M., Boccaccini A., 2020/07. Physiologia plantarum, 169 (3) pp. 357-368. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B80D52DA5C0E]
Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion.
Ruiz Buendía G.A., Leleu M., Marzetta F., Vanzan L., Tan J.Y., Ythier V., Randall E.L., Marques A.C., Baubec T., Murr R. et al., 2020/07. Science advances, 6 (27) pp. eaaz4012. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E413F4743329]
Transcriptome-wide sites of collided ribosomes reveal principles of translational pausing.
Arpat A.B., Liechti A., De Matos M., Dreos R., Janich P., Gatfield D., 2020/07. Genome research, 30 (7) pp. 985-999. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_071D4E7F8B17]
 
CDK7 Mediates the Beta-Adrenergic Signaling in Thermogenic Brown and White Adipose Tissues.
Ji H., Chen Y., Castillo-Armengol J., Dreos R., Moret C., Niederhäuser G., Delacuisine B., Lopez-Mejia I.C., Denechaud P.D., Fajas L., 2020/06/26. iScience, 23 (6) p. 101163. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EBF3BB5349A2]
 
Animal Behavior: A Neural Basis of Individuality.
Takagi S., Benton R., 2020/06/22. Current biology, 30 (12) pp. R710-R712. Peer-reviewed.
[DOI][Pmid][serval:BIB_58A6FCF8989D]
Investigating the Role of PPARβ/δ in Retinal Vascular Remodeling Using Pparβ/δ-Deficient Mice.
Ho S.Y., Kwan Y.P., Qiu B., Tan A., Murray H.L., Barathi V.A., Tan N.S., Cheung CMG, Wong T.Y., Wahli W. et al., 2020/06/20. International journal of molecular sciences, 21 (12) p. 4403. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EB69EAB5C732]
Rapid fast-delta decay following prolonged wakefulness marks a phase of wake-inertia in NREM sleep.
Hubbard J., Gent T.C., Hoekstra M.M.B., Emmenegger Y., Mongrain V., Landolt H.P., Adamantidis A.R., Franken P., 2020/06/19. Nature communications, 11 (1) p. 3130. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_0196B82A0620]
 
Framization of a Temperley-Lieb algebra of type B
Flores M., Goundaroulis D., 2020/06. Journal of Pure and Applied Algebra, 224 (6) p. 106273.
[DOI][WoS][serval:BIB_14F8FAA49034]
Mate discrimination among subspecies through a conserved olfactory pathway.
Khallaf M.A., Auer T.O., Grabe V., Depetris-Chauvin A., Ammagarahalli B., Zhang D.D., Lavista-Llanos S., Kaftan F., Weißflog J., Matzkin L.M. et al., 2020/06. Science advances, 6 (25) pp. eaba5279. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3DFEF50CD36F]
To Grow or Defend? More on the Plant Cornelian Dilemma.
Fiorucci A.S., 2020/06. Plant physiology, 183 (2) pp. 437-438. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B4DAF0633CC]
Emerging Roles of Translational Control in Circadian Timekeeping.
Castelo-Szekely V., Gatfield D., 2020/05/29. Journal of molecular biology, 432 (12) pp. 3483-3497. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A85C20DA0A13]
Exploring Extracellular Vesicles Biogenesis in Hypothalamic Cells through a Heavy Isotope Pulse/Trace Proteomic Approach.
Tan C.F., Teo H.S., Park J.E., Dutta B., Tse S.W., Leow M.K., Wahli W., Sze S.K., 2020/05/25. Cells, 9 (5) p. 1320.. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_38F5E271C09D]
 
Genomic Encryption of Digital Data Stored in Synthetic DNA
Grass Robert N., Heckel Reinhard, Dessimoz Christophe, Stark Wendelin J., 2020/05/25. Angewandte Chemie International Edition, 59 (22) pp. 8476-8480. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_43671755DDDE]
Chromatin Is Frequently Unknotted at the Megabase Scale.
Goundaroulis D., Lieberman Aiden E., Stasiak A., 2020/05/05. Biophysical journal, 118 (9) pp. 2268-2279. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F8B09FFFADF2]
 
AT the Onset of DNA Replication in Arabidopsis.
Fiorucci A.S., 2020/05. Plant physiology, 183 (1) pp. 19-20. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_96697797B79C]
 
Cell cycle regulators in cancer cell metabolism.
Leal-Esteban L.C., Fajas L., 2020/05/01. Biochimica et biophysica acta. Molecular basis of disease, 1866 (5) p. 165715. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_DADB4F066621]
Klf6 protects β-cells against insulin resistance-induced dedifferentiation.
Dumayne C., Tarussio D., Sanchez-Archidona A.R., Picard A., Basco D., Berney X.P., Ibberson M., Thorens B., 2020/05. Molecular metabolism, 35 p. 100958. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_48A38BFBF2D1]
UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis.
Tavridou E., Schmid-Siegert E., Fankhauser C., Ulm R., 2020/05. PLoS genetics, 16 (5) pp. e1008797. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F4BCB657A029]
 
The 18S ribosomal RNA m6A methyltransferase Mettl5 is required for normal walking behavior in Drosophila.
Leismann J., Spagnuolo M., Pradhan M., Wacheul L., Vu M.A., Musheev M., Mier P., Andrade-Navarro M.A., Graille M., Niehrs C. et al., 2020/04/29. EMBO reports pp. e49443. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1615D8B34DDC]
Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity.
Régnier M., Polizzi A., Smati S., Lukowicz C., Fougerat A., Lippi Y., Fouché E., Lasserre F., Naylies C., Bétoulières C. et al., 2020/04/16. Scientific reports, 10 (1) p. 6489. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F9275B48B31C]
 
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Drysdale R., Cook C.E., Petryszak R., Baillie-Gerritsen V., Barlow M., Gasteiger E., Gruhl F., Haas J., Lanfear J., Lopez R. et al., 2020/04/15. Bioinformatics, 36 (8) pp. 2636-2642. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_071A84C02DF9]
 
Dairy consumption is associated with lower plasma dihydroceramides in women from the D.E.S.I.R. cohort.
Fumeron F., Nicolas A., Bastard J.P., Fellahi S., Wigger L., Ibberson M., Cruciani-Guglielmacci C., Le Stunff H., Velho G., Magnan C. et al., 2020/04. Diabetes & metabolism, 46 (2) pp. 144-149. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_895023AD89B5]
 
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Dellicour S., Lemey P., Artois J., Lam T.T., Fusaro A., Monne I., Cattoli G., Kuznetsov D., Xenarios I., Dauphin G. et al., 2020/04/01. Bioinformatics, 36 (7) pp. 2098-2104. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_792965764CE2]
 
Lamin C Counteracts Glucose Intolerance in Aging, Obesity, and Diabetes Through β-Cell Adaptation.
de Toledo M., Lopez-Mejia I.C., Cavelier P., Pratlong M., Barrachina C., Gromada X., Annicotte J.S., Tazi J., Chavey C., 2020/04. Diabetes, 69 (4) pp. 647-660. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_886EB4D40055]
 
PHYTOCHROME INTERACTING FACTOR 7 is important for early responses to elevated temperature in Arabidopsis seedlings.
Fiorucci A.S., Galvão V.C., Ince Y.Ç., Boccaccini A., Goyal A., Allenbach Petrolati L., Trevisan M., Fankhauser C., 2020/04. The New phytologist, 226 (1) pp. 50-58. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_92E92D6C051E]
 
Regulation of hepatokine gene expression in response to fasting and feeding: Influence of PPAR-α and insulin-dependent signalling in hepatocytes.
Smati S., Régnier M., Fougeray T., Polizzi A., Fougerat A., Lasserre F., Lukowicz C., Tramunt B., Guillaume M., Burnol A.F. et al., 2020/04. Diabetes & metabolism, 46 (2) pp. 129-136. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6FBA3465D601]
 
Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation.
Tuck A.C., Rankova A., Arpat A.B., Liechti L.A., Hess D., Iesmantavicius V., Castelo-Szekely V., Gatfield D., Bühler M., 2020/03/19. Molecular cell, 77 (6) pp. 1222-1236.e13. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ED9F802C1F1F]
A Reservoir of Pluripotent Phloem Cells Safeguards the Linear Developmental Trajectory of Protophloem Sieve Elements.
Gujas B., Kastanaki E., Sturchler A., Cruz TMD, Ruiz-Sola M.A., Dreos R., Eicke S., Truernit E., Rodriguez-Villalon A., 2020/03/09. Current biology, 30 (5) pp. 755-766.e4. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4F98506D2DA6]
PPARβ/δ Agonism Upregulates Forkhead Box A2 to Reduce Inflammation in C2C12 Myoblasts and in Skeletal Muscle.
Phua WWT, Tan W.R., Yip Y.S., Hew I.D., Wee JWK, Cheng H.S., Leow MKS, Wahli W., Tan N.S., 2020/03/04. International journal of molecular sciences, 21 (5) p. 1747. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_CC8DBE3DA640]
 
A light-dependent molecular link between competition cues and defence responses in plants.
Fernández-Milmanda G.L., Crocco C.D., Reichelt M., Mazza C.A., Köllner T.G., Zhang T., Cargnel M.D., Lichy M.Z., Fiorucci A.S., Fankhauser C. et al., 2020/03. Nature plants, 6 (3) pp. 223-230. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_66D21A448B13]
Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia.
Sønderby I.E., Gústafsson Ó., Doan N.T., Hibar D.P., Martin-Brevet S., Abdellaoui A., Ames D., Amunts K., Andersson M., Armstrong N.J. et al., 2020/03. Molecular psychiatry, 25 (3) pp. 584-602. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8D048DECAD90]
 
Enzyme annotation in UniProtKB using Rhea.
Morgat A., Lombardot T., Coudert E., Axelsen K., Neto T.B., Gehant S., Bansal P., Bolleman J., Gasteiger E., de Castro E. et al., 2020/03/01. Bioinformatics, 36 (6) pp. 1896-1901. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_CFCF95D90BD3]
Functional integration of "undead" neurons in the olfactory system.
Prieto-Godino L.L., Silbering A.F., Khallaf M.A., Cruchet S., Bojkowska K., Pradervand S., Hansson B.S., Knaden M., Benton R., 2020/03. Science Advances, 6 (11) pp. eaaz7238. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_39A62FD7ACE6]
New genome assembly of the barn owl (Tyto alba alba).
Ducrest A.L., Neuenschwander S., Schmid-Siegert E., Pagni M., Train C., Dylus D., Nevers Y., Warwick Vesztrocy A., San-Jose L.M., Dupasquier M. et al., 2020/03. Ecology and evolution, 10 (5) pp. 2284-2298. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_83891497D9E8]
Olfactory receptor and circuit evolution promote host specialization
Auer T. O., Khallaf M. A., Silbering A. F., Zappia G., Ellis K., Álvarez-Ocaña R., Arguello J. R., Hansson B. S., Jefferis G. S. X. E., Caron S. J. C. et al., 2020/03. Nature, 579 (7799) pp. 402-408. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8BD867F10599]
 
Pathogenic homozygous variant in POMK gene is the cause of prenatally detected severe ventriculomegaly in two Lithuanian families.
Preiksaitiene E., Voisin N., Gueneau L., Benušienė E., Krasovskaja N., Blažytė E.M., Ambrozaitytė L., Rančelis T., Reymond A., Kučinskas V., 2020/03. American journal of medical genetics. Part A, 182 (3) pp. 536-542. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E560C613EBEE]
tRNA 2'-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila.
Angelova M.T., Dimitrova D.G., Da Silva B., Marchand V., Jacquier C., Achour C., Brazane M., Goyenvalle C., Bourguignon-Igel V., Shehzada S. et al., 2020/02/28. Nucleic acids research, 48 (4) pp. 2050-2072. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_54F1E8540412]
Prevalence Estimate of Blood Doping in Elite Track and Field Athletes During Two Major International Events.
Faiss R., Saugy J., Zollinger A., Robinson N., Schuetz F., Saugy M., Garnier PY, 2020/02/25. Frontiers in physiology, 11 p. 160. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_78FC8C51BAC6]
Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity.
Rodius S., de Klein N., Jeanty C., Sánchez-Iranzo H., Crespo I., Ibberson M., Xenarios I., Dittmar G., Mercader N., Niclou S.P. et al., 2020/02/19. Scientific reports, 10 (1) p. 2896. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_01B9FD89D57C]
 
Evolutionary Dynamics of the POTE Gene Family in Human and Nonhuman Primates.
Maggiolini FAM, Mercuri L., Antonacci F., Anaclerio F., Calabrese F.M., Lorusso N., L'Abbate A., Sorensen M., Giannuzzi G., Eichler E.E. et al., 2020/02/18. Genes, 11 (2) p. 213. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8D4E70C1D0D2]
 
GLP-1 receptor agonists synergize with DYRK1A inhibitors to potentiate functional human β cell regeneration.
Ackeifi C., Wang P., Karakose E., Manning Fox J.E., González B.J., Liu H., Wilson J., Swartz E., Berrouet C., Li Y. et al., 2020/02/12. Science translational medicine, 12 (530). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_4E3C5CE86DB9]
Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology.
Barbensi A., Celoria D., Harrington H.A., Stasiak A., Buck D., 2020/02. Science advances, 6 (9) pp. eaay1458. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_AF311EE3A9EB]
Visualization and normalization of drift effect across batches in metabolome-wide association studies
Bararpour N., Gilardi F., Carmeli C., Sidibe J., Ivanisevic J., Caputo T., Augsburger M., Grabherr S., Desvergne B., Guex N. et al., 2020/01/22..
[URN][DOI][serval:BIB_45680B563CA2]
Editorial: Involvement of Tanycytes in the Neuroendocrine Control of Energy Homeostasis.
Langlet F., Sáez J.C., García-Robles M.A., 2020. Frontiers in endocrinology, 11 p. 464. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8AB8E865EDB4]
 
GFP Reporters to Monitor Instability and Expression of Expanded CAG/CTG Repeats.
Cinesi C., Yang B., Dion V., 2020. Methods in molecular biology, 2056 pp. 255-268. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7C44FF78FC54]
How to build phylogenetic species trees with OMA.
Dylus D., Nevers Y., Altenhoff A.M., Gürtler A., Dessimoz C., Glover N.M., 2020. F1000Research, 9 p. 511. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D8D72D90D99B]
Identifying orthologs with OMA: A primer.
Zahn-Zabal M., Dessimoz C., Glover N.M., 2020. F1000Research, 9 p. 27. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_B7D7E8705809]
 
Making the most of genomic data with OMA.
Glover N.M., 2020. F1000Research, 9 p. 665. Peer-reviewed.
[DOI][Pmid][serval:BIB_53B7923F0FB7]
Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation.
Dold A., Han H., Liu N., Hildebrandt A., Brüggemann M., Rücklé C., Hänel H., Busch A., Beli P., Zarnack K. et al., 2020/01. PLoS genetics, 16 (1) pp. e1008581. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BF729C36E100]
OCIAD1 is a host mitochondrial substrate of the hepatitis C virus NS3-4A protease.
Tran HTL, Morikawa K., Anggakusuma A, Zibi R., Thi VLD, Penin F., Heim M.H., Quadroni M., Pietschmann T., Gouttenoire J. et al., 2020. PloS one, 15 (7) pp. e0236447. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_4333D0EE06EA]
 
Orthology: Definitions, Prediction, and Impact on Species Phylogeny Inference
Fernández Rosa, Gabaldón Toni, Dessimoz Christophe, 2020. dans Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book.
[serval:BIB_B360D6DE813C]
Predicting combinations of immunomodulators to enhance dendritic cell-based vaccination based on a hybrid experimental and computational platform.
Ahmed R., Crespo I., Tuyaerts S., Bekkar A., Graciotti M., Xenarios I., Kandalaft L.E., 2020. Computational and structural biotechnology journal, 18 pp. 2217-27. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2B3CB067B0E1]
 
Prenatal cerebral imaging features of a new syndromic entity related to KIAA1109 pathogenic variants mimicking tubulinopathy.
Cabet S., Putoux A., Buenerd A., Gueneau L., Reymond A., Thia EWH, Lai AHM, Schindewolf E.M., Sanlaville D., Lesca G. et al., 2020/01. Prenatal diagnosis, 40 (2) pp. 276-281. Peer-reviewed.
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Recent advances in understanding the genetics of sleep.
Jan M., O'Hara B.F., Franken P., 2020. F1000Research, 9. Peer-reviewed.
[DOI][Pmid][serval:BIB_9C9A5EBC7283]
THAP11F80L cobalamin disorder-associated mutation reveals normal and pathogenic THAP11 functions in gene expression and cell proliferation.
Dehaene H., Praz V., Lhôte P., Lopes M., Herr W., 2020. PloS one, 15 (1) pp. e0224646. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C37EB953998B]
2019
Sleep-wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex.
Hor C.N., Yeung J., Jan M., Emmenegger Y., Hubbard J., Xenarios I., Naef F., Franken P., 2019/12/17. Proceedings of the National Academy of Sciences of the United States of America, 116 (51) pp. 25773-25783. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6D830863EABB]
 
The Emerging Role of Gβ Subunits in Human Genetic Diseases.
Malerba N., De Nittis P., Merla G., 2019/12/04. Cells, 8 (12). Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_52988622942B]
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