Department of Fundamental Microbiology

Publications | Phd and Masters theses

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1114 publications

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Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms.
Flaugnatti N., Isaac S., Lemos Rocha L.F., Stutzmann S., Rendueles O., Stoudmann C., Vesel N., Garcia-Garcera M., Buffet A., Sana T.G. et al., 2021/10/01. Nature communications, 12 (1) p. 5751. Peer-reviewed.
Cell patterning by secretion-induced plasma membrane flows.
Gerganova V., Lamas I., Rutkowski D.M., Vještica A., Castro D.G., Vincenzetti V., Vavylonis D., Martin S.G., 2021/09/17. Science advances, 7 (38) pp. eabg6718. Peer-reviewed.
 
Assessing Antibiotics Biodegradation and Effects at Sub-inhibitory Concentrations by Quantitative Microbial Community Deconvolution
Özel Duygan Birge D., Gaille Caroline, Fenner Kathrin, van der Meer Jan R., 2021/09/16. Frontiers in Environmental Science, 9 p. 737247.
CcrZ is a pneumococcal spatiotemporal cell cycle regulator that interacts with FtsZ and controls DNA replication by modulating the activity of DnaA.
Gallay C., Sanselicio S., Anderson M.E., Soh Y.M., Liu X., Stamsås G.A., Pelliciari S., van Raaphorst R., Dénéréaz J., Kjos M. et al., 2021/09. Nature microbiology, 6 (9) pp. 1175-1187. Peer-reviewed.
Phylogenetically closely related pseudomonads isolated from arthropods exhibit differential insect-killing abilities and genetic variations in insecticidal factors.
Vesga P., Augustiny E., Keel C., Maurhofer M., Vacheron J., 2021/09. Environmental microbiology, 23 (9) pp. 5378-5394. Peer-reviewed.
Predicting spatial patterns of soil bacteria under current and future environmental conditions.
Mod H.K., Buri A., Yashiro E., Guex N., Malard L., Pinto-Figueroa E., Pagni M., Niculita-Hirzel H., van der Meer J.R., Guisan A., 2021/09. The ISME journal, 15 (9) pp. 2547-2560. Peer-reviewed.
Crucial role of Salmonella genomic island 1 master activator in the parasitism of IncC plasmids.
Durand R., Huguet K.T., Rivard N., Carraro N., Rodrigue S., Burrus V., 2021/08/20. Nucleic acids research, 49 (14) pp. 7807-7824. Peer-reviewed.
 
A low Smc flux avoids collisions and facilitates chromosome organization in Bacillus subtilis.
Anchimiuk A., Lioy V.S., Bock F.P., Minnen A., Boccard F., Gruber S., 2021/08/04. eLife, 10 pp. e65467. Peer-reviewed.
Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding.
Taschner M., Basquin J., Steigenberger B., Schäfer I.B., Soh Y.M., Basquin C., Lorentzen E., Räschle M., Scheltema R.A., Gruber S., 2021/08/02. The EMBO journal, 40 (15) pp. e107807. Peer-reviewed.
 
Niche partitioning facilitates coexistence of closely related honey bee gut bacteria.
Brochet S., Quinn A., Mars RAT, Neuschwander N., Sauer U., Engel P., 2021/07/19. eLife, 10 pp. e68583. Peer-reviewed.
Structures of ABCG2 under turnover conditions reveal a key step in the drug transport mechanism.
Yu Q., Ni D., Kowal J., Manolaridis I., Jackson S.M., Stahlberg H., Locher K.P., 2021/07/19. Nature communications, 12 (1) p. 4376. Peer-reviewed.
 
A Miniaturized Microbe-Silicon-Chip Based on Bioluminescent Engineered Escherichia coli for the Evaluation of Water Quality and Safety.
Sciuto E.L., Corso D., Libertino S., van der Meer J.R., Faro G., Coniglio M.A., 2021/07/16. International journal of environmental research and public health, 18 (14) p. 7580. Peer-reviewed.
 
Cryo-EM structure of alpha-synuclein fibrils amplified by PMCA from PD and MSA patient brains
Burger Domenic, Fenyi Alexis, Bousset Luc, Stahlberg Henning, Melki Ronald, 2021/07..
Encephalopathies Associated With Severe COVID-19 Present Neurovascular Unit Alterations Without Evidence for Strong Neuroinflammation.
Bernard-Valnet R., Perriot S., Canales M., Pizzarotti B., Caranzano L., Castro-Jiménez M., Epiney J.B., Vijiala S., Salvioni-Chiabotti P., Anichini A. et al., 2021/07. Neurology, 8 (5) pp. e1029. Peer-reviewed.
 
Prevalence of SARS-CoV-2 in Household Members and Other Close Contacts of COVID-19 Cases: A Serologic Study in Canton of Vaud, Switzerland.
Dupraz J., Butty A., Duperrex O., Estoppey S., Faivre V., Thabard J., Zuppinger C., Greub G., Pantaleo G., Pasquier J. et al., 2021/07. Open forum infectious diseases, 8 (7) pp. ofab149. Peer-reviewed.
 
Structural Basis of Drug Recognition by the Multidrug Transporter ABCG2.
Kowal J., Ni D., Jackson S.M., Manolaridis I., Stahlberg H., Locher K.P., 2021/06/25. Journal of molecular biology, 433 (13) p. 166980. Peer-reviewed.
 
Antiplatelet therapy abrogates platelet-assisted Staphylococcus aureus infectivity of biological heart valve conduits.
Ditkowski B., Bezulska-Ditkowska M., Jashari R., Baatsen P., Moreillon P., Rega F., Veloso T.R., Hoylaerts M.F., Heying R., Congenital Cardiology and Cardiac Surgery Group, 2021/06. The Journal of thoracic and cardiovascular surgery, 161 (6) pp. e457-e472. Peer-reviewed.
Comparative genomics of the Pseudomonas corrugata subgroup reveals high species diversity and allows the description of Pseudomonas ogarae sp. nov.
Garrido-Sanz D., Redondo-Nieto M., Martin M., Rivilla R., 2021/06. Microbial genomics, 7 (6) p. 000593. Peer-reviewed.
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist.
Isaikina P., Tsai C.J., Dietz N., Pamula F., Grahl A., Goldie K.N., Guixà-González R., Branco C., Paolini-Bertrand M., Calo N. et al., 2021/06. Science advances, 7 (25) pp. eabg8685. Peer-reviewed.
 
Ant behavioral maturation is mediated by a stochastic transition between two fundamental states.
Richardson T.O., Kay T., Braunschweig R., Journeau O.A., Rüegg M., McGregor S., Los Rios P., Keller L., 2021/05/24. Current biology, 31 (10) pp. 2253-2260.e3. Peer-reviewed.
Colonization process determines species diversity via competitive quasi-exclusion.
Yamauchi A., Ito K., Shibasaki S., 2021/05. Ecology and evolution, 11 (9) pp. 4470-4480. Peer-reviewed.
Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils.
Morales M., Sentchilo V., Hadadi N., van der Meer J.R., 2021/04/29. Environmental microbiome, 16 (1) p. 8. Peer-reviewed.
 
Gradual opening of Smc arms in prokaryotic condensin.
Vazquez Nunez R., Polyhach Y., Soh Y.M., Jeschke G., Gruber S., 2021/04/27. Cell reports, 35 (4) p. 109051. Peer-reviewed.
Environmental connectivity controls diversity in soil microbial communities.
Dubey M., Hadadi N., Pelet S., Carraro N., Johnson D.R., van der Meer J.R., 2021/04/22. Communications biology, 4 (1) p. 492. Peer-reviewed.
Direct and indirect regulation of Pom1 cell size pathway by the protein phosphatase 2C Ptc1.
Gerganova V., Bhatia P., Vincenzetti V., Martin S.G., 2021/04/15. Molecular biology of the cell, 32 (8) pp. 703-711. Peer-reviewed.
 
Impact of Chronic Exposure to Sublethal Doses of Glyphosate on Honey Bee Immunity, Gut Microbiota and Infection by Pathogens.
Castelli L., Balbuena S., Branchiccela B., Zunino P., Liberti J., Engel P., Antúnez K., 2021/04/15. Microorganisms, 9 (4) p. 845. Peer-reviewed.
 
A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation.
Das S., Bernasconi E., Koutsokera A., Wurlod D.A., Tripathi V., Bonilla-Rosso G., Aubert J.D., Derkenne M.F., Mercier L., Pattaroni C. et al., 2021/04/09. Nature communications, 12 (1) p. 2126. Peer-reviewed.
Spatial coupling between DNA replication and mismatch repair in Caulobacter crescentus.
Chai T., Terrettaz C., Collier J., 2021/04/06. Nucleic acids research, 49 (6) pp. 3308-3321. Peer-reviewed.
ε<sup>2</sup>-Phages Are Naturally Bred and Have a Vastly Improved Host Range in Staphylococcus aureus over Wild Type Phages.
Sáez Moreno D., Visram Z., Mutti M., Restrepo-Córdoba M., Hartmann S., Kremers A.I., Tišáková L., Schertler S., Wittmann J., Kalali B. et al., 2021/04/02. Pharmaceuticals, 14 (4) p. 325. Peer-reviewed.
Induction of Wheat Resistance to STB by the Endophytic Fungus serendipita Indica and pseudomonas Protegens.
Ashrafi J., Rahnama K., Babaeizad V., Ramezanpour S.S., Keel C., 2021/04. Iranian journal of biotechnology, 19 (2) pp. e2762. Peer-reviewed.
 
Miniaturized electrochemical biosensor based on whole-cell for heavy metal ions detection in water.
Sciuto E.L., Petralia S., van der Meer J.R., Conoci S., 2021/04. Biotechnology and bioengineering, 118 (4) pp. 1456-1465. Peer-reviewed.
 
Structural and molecular determinants for the interaction of ExbB from <i>Serratia marcescens</i> and HasB, a TonB paralog
Biou Valérie, Adaixo Ricardo Jorge Diogo, Chami Mohamed, Coureux Pierre-Damien, Laurent Benoist, Ntsogo Enguéné Véronique Yvette, de Amorim Gisele Cardoso, Izadi-Pruneyre Nadia, Malosse Christian, Chamot-Rooke Julia et al., 2021/04..
 
Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria.
Emonet A., Zhou F., Vacheron J., Heiman C.M., Dénervaud Tendon V., Ma K.W., Schulze-Lefert P., Keel C., Geldner N., 2021/03/08. Current biology, 31 (5) pp. 1012-1028.e7. Peer-reviewed.
Harnessing CRISPR-Cas9 for Genome Editing in Streptococcus pneumoniae D39V.
Synefiaridou D., Veening J.W., 2021/02/26. Applied and environmental microbiology, 87 (6) pp. e02762-20. Peer-reviewed.
 
A review of recommendations for infective endocarditis prevention in patients undergoing transcatheter aortic valve implantation.
Conen A., Stortecky S., Moreillon P., Hannan M.M., Franzeck F.C., Jeger R., Widmer A.F., 2021/02/19. EuroIntervention, 16 (14) pp. 1135-1140. Peer-reviewed.
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.
Kaushal A., Mohana G., Dorier J., Özdemir I., Omer A., Cousin P., Semenova A., Taschner M., Dergai O., Marzetta F. et al., 2021/02/12. Nature communications, 12 (1) p. 1011. Peer-reviewed.
Assessing Biodegradability of Chemical Compounds from Microbial Community Growth Using Flow Cytometry.
Özel Duygan B.D., Rey S., Leocata S., Baroux L., Seyfried M., van der Meer J.R., 2021/02/09. mSystems, 6 (1) pp. e01143-20. Peer-reviewed.
 
A rod conformation of the Pyrococcus furiosus Rad50 coiled coil.
Soh Y.M., Basquin J., Gruber S., 2021/02. Proteins, 89 (2) pp. 251-255. Peer-reviewed.
 
Mechanisms underlying gut microbiota-host interactions in insects.
Schmidt K., Engel P., 2021/01/28. The Journal of experimental biology, 224 (Pt 2) pp. jeb207696. Peer-reviewed.
Live cell dynamics of production, explosive release and killing activity of phage tail-like weapons for Pseudomonas kin exclusion.
Vacheron J., Heiman C.M., Keel C., 2021/01/19. Communications biology, 4 (1) p. 87. Peer-reviewed.
Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.
Liu X., Kimmey J.M., Matarazzo L., de Bakker V., Van Maele L., Sirard J.C., Nizet V., Veening J.W., 2021/01/13. Cell host & microbe, 29 (1) pp. 107-120.e6. Peer-reviewed.
Engineered Phage Endolysin Eliminates Gardnerella Biofilm without Damaging Beneficial Bacteria in Bacterial Vaginosis Ex Vivo.
Landlinger C., Tisakova L., Oberbauer V., Schwebs T., Muhammad A., Latka A., Van Simaey L., Vaneechoutte M., Guschin A., Resch G. et al., 2021/01/08. Pathogens, 10 (1) pp. E54. Peer-reviewed.
Addressing Evolutionary Questions with Synthetic Biology
Baier Florian, Schaerli Yolanda, 2021. pp. 135-157 dans Evolutionary Systems Biology, Springer International Publishing.
Cell cycle-dependent and independent mating blocks ensure fungal zygote survival and ploidy maintenance.
Vještica A., Bérard M., Liu G., Merlini L., Nkosi P.J., Martin S.G., 2021/01. PLoS biology, 19 (1) pp. e3001067. Peer-reviewed.
Cross-regulation between CDK and MAPK control cellular fate
Pelet Serge, 2021. Quantitative Biology, 9 (3) pp. 341-358. Peer-reviewed.
 
Isolation and characterization of bacteriophages from the human skin microbiome that infect Staphylococcus epidermidis.
Valente L.G., Pitton M., Fürholz M., Oberhaensli S., Bruggmann R., Leib S.L., Jakob S.M., Resch G., Que Y.A., Cameron D.R., 2021. FEMS microbes, 2 pp. xtab003. Peer-reviewed.
Phage susceptibility testing and infectious titer determination through wide-field lensless monitoring of phage plaque growth.
Perlemoine P., Marcoux P.R., Picard E., Hadji E., Zelsmann M., Mugnier G., Marchet A., Resch G., O'Connell L., Lacot E., 2021. PloS one, 16 (3) pp. e0248917. Peer-reviewed.
Ribose-Binding Protein Mutants With Improved Interaction Towards the Non-natural Ligand 1,3-Cyclohexanediol.
Tavares D., van der Meer J.R., 2021. Frontiers in bioengineering and biotechnology, 9 p. 705534. Peer-reviewed.
The multidomain architecture of a bacteriophage endolysin enables intramolecular synergism and regulation of bacterial lysis.
Oechslin F., Menzi C., Moreillon P., Resch G., 2021. The Journal of biological chemistry, 296 p. 100639. Peer-reviewed.
Whole-exome Sequencing for the Identification of Rare Variants in Primary Immunodeficiency Genes in Children With Sepsis: A Prospective, Population-based Cohort Study.
Borghesi A., Trück J., Asgari S., Sancho-Shimizu V., Agyeman PKA, Bellos E., Giannoni E., Stocker M., Posfay-Barbe K.M., Heininger U. et al., 2020/12/17. Clinical infectious diseases, 71 (10) pp. e614-e623. Peer-reviewed.
Genome-wide analysis of single nucleotide variants allows for robust and accurate assessment of clonal derivation in cell lines used to produce biologics.
Kuhn A., Le Fourn V., Fisch I., Mermod N., 2020/12. Biotechnology and bioengineering, 117 (12) pp. 3628-3638. Peer-reviewed.
Greater topoclimatic control of above- versus below-ground communities.
Mod H.K., Scherrer D., Di Cola V., Broennimann O., Blandenier Q., Breiner F.T., Buri A., Goudet J., Guex N., Lara E. et al., 2020/12. Global change biology, 26 (12) pp. 6715-6728. Peer-reviewed.
Visualizing cellular heterogeneity by quantifying the dynamics of MAPK activity in live mammalian cells with synthetic fluorescent biosensors.
Ma M., Bordignon P., Dotto G.P., Pelet S., 2020/12. Heliyon, 6 (12) pp. e05574. Peer-reviewed.
Prevalence of phase variable epigenetic invertons among host-associated bacteria.
Huang X., Wang J., Li J., Liu Y., Liu X., Li Z., Kurniyati K., Deng Y., Wang G., Ralph J.D. et al., 2020/11/18. Nucleic acids research, 48 (20) pp. 11468-11485. Peer-reviewed.
Synthetic gene-regulatory networks in the opportunistic human pathogen Streptococcus pneumoniae.
Sorg R.A., Gallay C., Van Maele L., Sirard J.C., Veening J.W., 2020/11/03. Proceedings of the National Academy of Sciences of the United States of America, 117 (44) pp. 27608-27619. Peer-reviewed.
Transcriptome plasticity underlying plant root colonization and insect invasion by Pseudomonas protegens.
Vesga P., Flury P., Vacheron J., Keel C., Croll D., Maurhofer M., 2020/11. The ISME journal, 14 (11) pp. 2766-2782. Peer-reviewed.
CRISPR-based gene expression control for synthetic gene circuits.
Santos-Moreno J., Schaerli Y., 2020/10/30. Biochemical Society transactions, 48 (5) pp. 1979-1993. Peer-reviewed.
Burden and Timeline of Infectious Diseases in the First Year After Solid Organ Transplantation in the Swiss Transplant Cohort Study.
van Delden C., Stampf S., Hirsch H.H., Manuel O., Meylan P., Cusini A., Hirzel C., Khanna N., Weisser M., Garzoni C. et al., 2020/10/23. Clinical infectious diseases, 71 (7) pp. e159-e169. Peer-reviewed.
 
Structural investigation of ACE2 dependent disassembly of the trimeric SARS-CoV-2 Spike glycoprotein
Ni Dongchun, Lau Kelvin, Lehmann Frank, Fränkl Andri, Hacker David, Pojer Florence, Stahlberg Henning, 2020/10/12..
 
Real-time sensing of MAPK signaling in medulloblastoma cells reveals cellular evasion mechanism counteracting dasatinib blockade of ERK activation during invasion.
Schönholzer M.T., Migliavacca J., Alvarez E., Santhana Kumar K., Neve A., Gries A., Ma M., Grotzer M.A., Baumgartner M., 2020/10. Neoplasia, 22 (10) pp. 470-483. Peer-reviewed.
Reusability of filtering facepiece respirators after decontamination through drying and germicidal UV irradiation.
Vernez D., Save J., Oppliger A., Concha-Lozano N., Hopf N.B., Niculita-Hirzel H., Resch G., Michaud V., Dorange-Pattoret L., Charrière N. et al., 2020/10. BMJ global health, 5 (10) pp. e003110. Peer-reviewed.
Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events.
Kurushima J., Campo N., van Raaphorst R., Cerckel G., Polard P., Veening J.W., 2020/09/23. eLife, 9 pp. e58771. Peer-reviewed.
Activation of Cdc42 GTPase upon CRY2-Induced Cortical Recruitment Is Antagonized by GAPs in Fission Yeast.
Lamas I., Weber N., Martin S.G., 2020/09/12. Cells, 9 (9) pp. E2089. Peer-reviewed.
Secondary metabolites from plant-associated Pseudomonas are overproduced in biofilm.
Rieusset L., Rey M., Muller D., Vacheron J., Gerin F., Dubost A., Comte G., Prigent-Combaret C., 2020/09. Microbial biotechnology, 13 (5) pp. 1562-1580. Peer-reviewed.
 
Suppression of High-Fat Diet-Induced Obesity by Platycodon Grandiflorus in Mice Is Linked to Changes in the Gut Microbiota.
Ke W., Bonilla-Rosso G., Engel P., Wang P., Chen F., Hu X., 2020/09/01. The Journal of nutrition, 150 (9) pp. 2364-2374. Peer-reviewed.
 
Identification of a Novel LysR-Type Transcriptional Regulator in Staphylococcus aureus That Is Crucial for Secondary Tissue Colonization during Metastatic Bloodstream Infection.
Groma M., Horst S.A., Das S., Huettel B., Klepsch M., Rudel T., Medina E., Fraunholz M., 2020/08/25. mBio, 11 (4) pp. e01646-20. Peer-reviewed.
Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium Pseudomonas nitroreducens HBP-1.
Carraro N., Sentchilo V., Polák L., Bertelli C., van der Meer J.R., 2020/08/12. Genes, 11 (8) p. 930. Peer-reviewed.
Phospho-regulation of the Shugoshin - Condensin interaction at the centromere in budding yeast.
Yahya G., Wu Y., Peplowska K., Röhrl J., Soh Y.M., Bürmann F., Gruber S., Storchova Z., 2020/08. PLoS genetics, 16 (8) pp. e1008569. Peer-reviewed.
An analog to digital converter controls bistable transfer competence development of a widespread bacterial integrative and conjugative element.
Carraro N., Richard X., Sulser S., Delavat F., Mazza C., van der Meer J.R., 2020/07/28. eLife, 9 pp. e57915. Peer-reviewed.
 
Bioluminescence-Triggered Photoswitchable Bacterial Adhesions Enable Higher Sensitivity and Dual-Readout Bacterial Biosensors for Mercury.
Chen F., Warnock R.L., Van der Meer J.R., Wegner S.V., 2020/07/24. ACS sensors, 5 (7) pp. 2205-2210. Peer-reviewed.
Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data.
Özel Duygan B.D., Hadadi N., Babu A.F., Seyfried M., van der Meer J.R., 2020/07/15. Communications biology, 3 (1) p. 379. Peer-reviewed.
 
Vast Differences in Strain-Level Diversity in the Gut Microbiota of Two Closely Related Honey Bee Species.
Ellegaard K.M., Suenami S., Miyazaki R., Engel P., 2020/07/06. Current biology, 30 (13) pp. 2520-2531.e7. Peer-reviewed.
Characterization and Lytic Activity of Isolated Escherichia coli Bacteriophages against Escherichia coli in vitro.
Rahimzadeh G., Resch G., Rezai M.S., Nemati Hevelaee E., 2020/07. Iranian journal of medical sciences, 45 (4) pp. 298-303. Peer-reviewed.
Controlling evolutionary dynamics to optimize microbial bioremediation
Shibasaki Shota, Mitri Sara, 2020/07. Evolutionary Applications, 13 (9) pp. 2460-2471. Peer-reviewed.
Crosstalk and spatiotemporal regulation between stress-induced MAP kinase pathways and pheromone signaling in budding yeast.
Van Drogen F., Dard N., Pelet S., Lee S.S., Mishra R., Srejić N., Peter M., 2020/07. Cell cycle, 19 (14) pp. 1707-1715. Peer-reviewed.
 
The architecture of the centriole cartwheel-containing region revealed by cryo-electron tomography
Klena Nikolai, Le Guennec Maeva, Tassin Anne-Marie, van den Hoek Hugo, Erdmann Philipp S., Schaffer Miroslava, Geimer Stefan, Aeschlimann Gabriel, Kovacik Lubomir, Goldie Kenneth N. et al., 2020/07..
Transient vitamin B5 starving improves mammalian cell homeostasis and protein production.
Pourcel L., Buron F., Garcia F., Delaloix M.S., Le Fourn V., Girod P.A., Mermod N., 2020/07. Metabolic engineering, 60 pp. 77-86. Peer-reviewed.
Human GBP1 binds LPS to initiate assembly of a caspase-4 activating platform on cytosolic bacteria.
Santos J.C., Boucher D., Schneider L.K., Demarco B., Dilucca M., Shkarina K., Heilig R., Chen K.W., Lim RYH, Broz P., 2020/06/24. Nature communications, 11 (1) p. 3276. Peer-reviewed.
Single-particle imaging of stress-promoters induction reveals the interplay between MAPK signaling, chromatin and transcription factors.
Wosika V., Pelet S., 2020/06/23. Nature communications, 11 (1) p. 3171. Peer-reviewed.
In vivo dual RNA-seq reveals that neutrophil recruitment underlies differential tissue tropism of Streptococcus pneumoniae.
Minhas V., Aprianto R., McAllister L.J., Wang H., David S.C., McLean K.T., Comerford I., McColl S.R., Paton J.C., Veening J.W. et al., 2020/06/05. Communications biology, 3 (1) p. 293. Peer-reviewed.
IFT proteins interact with HSET to promote supernumerary centrosome clustering in mitosis.
Vitre B., Taulet N., Guesdon A., Douanier A., Dosdane A., Cisneros M., Maurin J., Hettinger S., Anguille C., Taschner M. et al., 2020/06/04. EMBO reports, 21 (6) pp. e49234. Peer-reviewed.
Multistable and dynamic CRISPRi-based synthetic circuits.
Santos-Moreno J., Tasiudi E., Stelling J., Schaerli Y., 2020/06/02. Nature communications, 11 (1) p. 2746. Peer-reviewed.
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch.
Barbier I., Perez-Carrasco R., Schaerli Y., 2020/06. Molecular systems biology, 16 (6) pp. e9361. Peer-reviewed.
 
Purification and crystal structure of human ODA16: Implications for ciliary import of outer dynein arms by the intraflagellar transport machinery.
Wang J., Taschner M., Petriman N.A., Andersen M.B., Basquin J., Bhogaraju S., Vetter M., Wachter S., Lorentzen A., Lorentzen E., 2020/06. Protein science, 29 (6) pp. 1502-1510. Peer-reviewed.
Sterol biosensor reveals LAM-family Ltc1-dependent sterol flow to endosomes upon Arp2/3 inhibition.
Marek M., Vincenzetti V., Martin S.G., 2020/06/01. The Journal of cell biology, 219 (6) pp. e202001147. Peer-reviewed.
 
Structure of a proton-dependent lipid transporter involved in lipoteichoic acids biosynthesis
Zhang Bing, Liu Xue, Lambert Elisabeth, Mas Guillaume, Hiller Sebastian, Veening Jan-Willem, Perez Camilo, 2020/06. Nature Structural & Molecular Biology, 27 (6) pp. 561-569. Peer-reviewed.
 
Syndromic panels or 'panel syndrome'? A perspective through the lens of respiratory tract infections.
Zanella M.C., Meylan P., Kaiser L., 2020/06. Clinical microbiology and infection, 26 (6) pp. 665-668. Peer-reviewed.
 
The gut microbiota - brain axis of insects.
Liberti J., Engel P., 2020/06. Current opinion in insect science, 39 pp. 6-13. Peer-reviewed.
 
Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae.
Soler-Bistué A., Aguilar-Pierlé S., Garcia-Garcerá M., Val M.E., Sismeiro O., Varet H., Sieira R., Krin E., Skovgaard O., Comerci D.J. et al., 2020/04/29. BMC biology, 18 (1) p. 43. Peer-reviewed.
DYRK kinase Pom1 drives F-BAR protein Cdc15 from the membrane to promote medial division.
Bhattacharjee R., Mangione M.C., Wos M., Chen J.S., Snider C.E., Roberts-Galbraith R.H., McDonald N.A., Presti L.L., Martin S.G., Gould K.L., 2020/04/15. Molecular biology of the cell, 31 (9) pp. 917-929. Peer-reviewed.
 
Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer.
Domenech A., Brochado A.R., Sender V., Hentrich K., Henriques-Normark B., Typas A., Veening J.W., 2020/04/08. Cell host & microbe, 27 (4) pp. 544-555.e3. Peer-reviewed.
Influence of cytoskeleton organization on recombinant protein expression by CHO cells.
Pourcel L., Buron F., Arib G., Le Fourn V., Regamey A., Bodenmann I., Girod P.A., Mermod N., 2020/04. Biotechnology and bioengineering, 117 (4) pp. 1117-1126. Peer-reviewed.
Overexpression of transcription factor Foxa1 and target genes remediate therapeutic protein production bottlenecks in Chinese hamster ovary cells.
Berger A., Le Fourn V., Masternak J., Regamey A., Bodenmann I., Girod P.A., Mermod N., 2020/04. Biotechnology and bioengineering, 117 (4) pp. 1101-1116. Peer-reviewed.
 
Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota.
Bonilla-Rosso G., Steiner T., Wichmann F., Bexkens E., Engel P., 2020/03/31. Proceedings of the National Academy of Sciences of the United States of America, 117 (13) pp. 7355-7362. Peer-reviewed.
HdaB: a novel and conserved DnaA-related protein that targets the RIDA process to stimulate replication initiation.
Frandi A., Collier J., 2020/03/18. Nucleic acids research, 48 (5) pp. 2412-2423. Peer-reviewed.
 
Docking and Molecular Dynamics Predictions of Pesticide Binding to the Calyx of Bovine β-Lactoglobulin.
Cortes-Hernandez P., Vázquez Nuñez R., Domínguez-Ramírez L., 2020/03/14. International journal of molecular sciences, 21 (6) p. 1988. Peer-reviewed.
Evidence for binary Smc complexes lacking kite subunits in archaea.
Jeon J.H., Lee H.S., Shin H.C., Kwak M.J., Kim Y.G., Gruber S., Oh B.H., 2020/03/01. IUCrJ, 7 (Pt 2) pp. 193-206. Peer-reviewed.
 
Gut microbiota structure differs between honeybees in winter and summer.
Kešnerová L., Emery O., Troilo M., Liberti J., Erkosar B., Engel P., 2020/03. The ISME journal, 14 (3) pp. 801-814. Peer-reviewed.
Draft Genome Sequence of Pseudomonas sp. Strain LD120, Isolated from the Marine Alga Saccharina latissima
Heiman Clara Margot, Wiese Jutta, Kupferschmied Peter, Maurhofer Monika, Keel Christoph, Vacheron Jordan, 2020/02/20. Microbiology Resource Announcements, 9 (8).
 
Dietary Platycodon grandiflorus Attenuates Hepatic Insulin Resistance and Oxidative Stress in High-Fat-Diet Induced Non-Alcoholic Fatty Liver Disease.
Ke W., Wang P., Wang X., Zhou X., Hu X., Chen F., 2020/02/14. Nutrients, 12 (2) p. 480. Peer-reviewed.
 
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria.
Garcia-Garcera M., Rocha EPC, 2020/02/06. Nature communications, 11 (1) p. 758. Peer-reviewed.
A helical inner scaffold provides a structural basis for centriole cohesion.
Le Guennec M., Klena N., Gambarotto D., Laporte M.H., Tassin A.M., van den Hoek H., Erdmann P.S., Schaffer M., Kovacik L., Borgers S. et al., 2020/02. Science advances, 6 (7) pp. eaaz4137. Peer-reviewed.
Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release.
Duroy P.O., Bosshard S., Schmid-Siegert E., Neuenschwander S., Arib G., Lemercier P., Masternak J., Roesch L., Buron F., Girod P.A. et al., 2020/02. Biotechnology and bioengineering, 117 (2) pp. 466-485. Peer-reviewed.
A toolbox of stable integration vectors in the fission yeast Schizosaccharomyces pombe
Vještica Aleksandar, Marek Magdalena, Nkosi Pedro Junior, Merlini Laura, Liu Gaowen, Bérard Melvin, Billault-Chaumartin Ingrid, Martin Sophie G., 2020/01/01. Journal of Cell Science, 133 (1) pp. jcs240754. Peer-reviewed.
BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data.
van Raaphorst R., Kjos M., Veening J.W., 2020/01. Molecular microbiology, 113 (1) pp. 297-308. Peer-reviewed.
Changing the biological Rosetta stone: the (commercial) potential of recoded microbes.
Santos-Moreno J., Schaerli Y., 2020/01. Microbial biotechnology, 13 (1) pp. 11-13.
Combined Bacteriophage and Antibiotic Treatment Prevents Pseudomonas aeruginosa Infection of Wild Type and cftr- Epithelial Cells.
Luscher A., Simonin J., Falconnet L., Valot B., Hocquet D., Chanson M., Resch G., Köhler T., van Delden C., 2020. Frontiers in microbiology, 11 p. 1947. Peer-reviewed.
 
Decision Making in Phagocytosis.
Prassler J., Simon F., Ecke M., Gruber S., Gerisch G., 2020. Advances in experimental medicine and biology, 1246 pp. 71-81. Peer-reviewed.
Editorial: Manufacturing, Formulation and Delivery Issues for Phage Therapy to Become A Reality.
Malik D.J., Resch G., 2020. Frontiers in microbiology, 11 p. 584137. Peer-reviewed.
 
First person – Aleksandar Vještica
Vjestica A., 2020/01/01. Journal of Cell Science, 133 (1) pp. jcs242750.
Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.
Hadadi N., Pandey V., Chiappino-Pepe A., Morales M., Gallart-Ayala H., Mehl F., Ivanisevic J., Sentchilo V., Meer JRV, 2020. NPJ systems biology and applications, 6 (1) p. 1. Peer-reviewed.
Neurologic complications of acute hepatitis E virus infection.
Ripellino P., Pasi E., Melli G., Staedler C., Fraga M., Moradpour D., Sahli R., Aubert V., Martinetti G., Bihl F. et al., 2020/01. Neurology, 7 (1) pp. e643. Peer-reviewed.
Optogenetics reveals Cdc42 local activation by scaffold-mediated positive feedback and Ras GTPase.
Lamas I., Merlini L., Vještica A., Vincenzetti V., Martin S.G., 2020/01. PLoS biology, 18 (1) pp. e3000600. Peer-reviewed.
The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter.
Woldemeskel S.A., Daitch A.K., Alvarez L., Panis G., Zeinert R., Gonzalez D., Smith E., Collier J., Chien P., Cava F. et al., 2020/01. PLoS genetics, 16 (1) pp. e1008591. Peer-reviewed.
The co‐evolution of longevity and social life
Lucas E R., Keller L., 2020/01. Functional Ecology, 34 (1) pp. 76-87.
 
Characterization of mesoangioblast cell fate and improved promyogenic potential of a satellite cell-like subpopulation upon transplantation in dystrophic murine muscles.
Mavoungou L.O., Neuenschwander S., Pham U., Iyer P.S., Mermod N., 2019/12. Stem cell research, 41 p. 101619. Peer-reviewed.
 
Efficacy of newly isolated and highly potent bacteriophages in a mouse model of extensively drug-resistant Acinetobacter baumannii bacteraemia.
Leshkasheli L., Kutateladze M., Balarjishvili N., Bolkvadze D., Save J., Oechslin F., Que Y.A., Resch G., 2019/12. Journal of global antimicrobial resistance, 19 pp. 255-261. Peer-reviewed.
 
Self-organization of parS centromeres by the ParB CTP hydrolase.
Soh Y.M., Davidson I.F., Zamuner S., Basquin J., Bock F.P., Taschner M., Veening J.W., De Los Rios P., Peters J.M., Gruber S., 2019/11/29. Science, 366 (6469) pp. 1129-1133. Peer-reviewed.
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
Içvara Barbier, Rubén Perez Carrasco, Yolanda Schaerli, 2019/11/21..
Computational redesign of the Escherichia coli ribose-binding protein ligand binding pocket for 1,3-cyclohexanediol and cyclohexanol.
Tavares D., Reimer A., Roy S., Joublin A., Sentchilo V., van der Meer J.R., 2019/11/15. Scientific reports, 9 (1) p. 16940. Peer-reviewed.
 
Are Antiplatelet Agents Beneficial in Prevention of Infective Endocarditis?
Heying R., Vanassche T., Moreillon P., 2019/11/01. JAMA cardiology, 4 (11) p. 1177. Peer-reviewed.
 
Bacteriophages Improve Outcomes in Experimental Staphylococcus aureus Ventilator-associated Pneumonia.
Prazak J., Iten M., Cameron D.R., Save J., Grandgirard D., Resch G., Goepfert C., Leib S.L., Takala J., Jakob S.M. et al., 2019/11/01. American journal of respiratory and critical care medicine, 200 (9) pp. 1126-1133. Peer-reviewed.
Capping Protein Insulates Arp2/3-Assembled Actin Patches from Formins.
Billault-Chaumartin I., Martin S.G., 2019/10/07. Current biology, 29 (19) pp. 3165-3176.e6. Peer-reviewed.
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia.
Cameron D.R., Ramette A., Prazak J., Entenza J., Haenggi M., Que Y.A., Resch G., 2019/10/03. Microbiology resource announcements, 8 (40). Peer-reviewed.
 
A role for alternative end-joining factors in homologous recombination and genome editing in Chinese hamster ovary cells.
Bosshard S., Duroy P.O., Mermod N., 2019/10. DNA repair, 82 p. 102691. Peer-reviewed.
RocS drives chromosome segregation and nucleoid protection in Streptococcus pneumoniae.
Mercy C., Ducret A., Slager J., Lavergne J.P., Freton C., Nagarajan S.N., Garcia P.S., Noirot-Gros M.F., Dubarry N., Nourikyan J. et al., 2019/10. Nature microbiology, 4 (10) pp. 1661-1670. Peer-reviewed.
SosA inhibits cell division in Staphylococcus aureus in response to DNA damage.
Bojer M.S., Wacnik K., Kjelgaard P., Gallay C., Bottomley A.L., Cohn M.T., Lindahl G., Frees D., Veening J.W., Foster S.J. et al., 2019/10. Molecular microbiology, 112 (4) pp. 1116-1130. Peer-reviewed.
Updated Genome Sequence and Annotation for the Full Genome of Pseudomonas protegens CHA0.
Smits THM, Rezzonico F., Frasson D., Vesga P., Vacheron J., Blom J., Pothier J.F., Keel C., Maurhofer M., Sievers M., 2019/09/26. Microbiology resource announcements, 8 (39). Peer-reviewed.
 
Biosensors in Monitoring Water Quality and Safety: An Example of a Miniaturizable Whole-Cell Based Sensor for Hg2+ Optical Detection in Water
Sciuto Emanuele Luigi, Coniglio Maria Anna, Corso Domenico, van der Meer Jan Roelof, Acerbi Fabio, Gola Alberto, Libertino Sebania, 2019/09/24. Water, 11 (10) p. 1986.
Mechanical stress impairs pheromone signaling via Pkc1-mediated regulation of the MAPK scaffold Ste5.
van Drogen F., Mishra R., Rudolf F., Walczak M.J., Lee S.S., Reiter W., Hegemann B., Pelet S., Dohnal I., Binolfi A. et al., 2019/09/02. The Journal of cell biology, 218 (9) pp. 3117-3133. Peer-reviewed.
Quorum sensing with pheromones.
Martin S.G., 2019/09. Nature microbiology, 4 (9) pp. 1430-1431. Peer-reviewed.
The ClpX chaperone controls autolytic splitting of Staphylococcus aureus daughter cells, but is bypassed by β-lactam antibiotics or inhibitors of WTA biosynthesis.
Jensen C., Bæk K.T., Gallay C., Thalsø-Madsen I., Xu L., Jousselin A., Ruiz Torrubia F., Paulander W., Pereira A.R., Veening J.W. et al., 2019/09. PLoS pathogens, 15 (9) pp. e1008044. Peer-reviewed.
 
Oral transfer of chemical cues, growth proteins and hormones in social insects.
LeBoeuf A.C., Waridel P., Brent C.S., Gonçalves A.N., Menin L., Ortiz D., Riba-Grognuz O., Koto A., Soares Z.G., Privman E. et al., 2019/08/19. eLife, 8. Peer-reviewed.
Toxicity drives facilitation between 4 bacterial species.
Piccardi P., Vessman B., Mitri S., 2019/08/06. Proceedings of the National Academy of Sciences of the United States of America, 116 (32) pp. 15979-15984. Peer-reviewed.
Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?
Arias-Sánchez F.I., Vessman B., Mitri S., 2019/08. PLoS biology, 17 (8) pp. e3000356. Peer-reviewed.
DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes.
Marko J.F., De Los Rios P., Barducci A., Gruber S., 2019/07/26. Nucleic acids research, 47 (13) pp. 6956-6972. Peer-reviewed.
 
Transient DNA Occupancy of the SMC Interarm Space in Prokaryotic Condensin.
Vazquez Nunez R., Ruiz Avila L.B., Gruber S., 2019/07/25. Molecular cell, 75 (2) pp. 209-223.e6. Peer-reviewed.
A Framework for the Modular and Combinatorial Assembly of Synthetic Gene Circuits.
Santos-Moreno J., Schaerli Y., 2019/07/19. ACS synthetic biology, 8 (7) pp. 1691-1697. Peer-reviewed.
Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1.
Yashiro E., Savova-Bianchi D., Niculita-Hirzel H., 2019/07/02. International journal of environmental research and public health, 16 (13) p. 2335. Peer-reviewed.
Cell division control in Caulobacter crescentus.
Collier J., 2019/07. Biochimica et biophysica acta. Gene regulatory mechanisms, 1862 (7) pp. 685-690. Peer-reviewed.
 
External carbon addition for enhancing denitrification modifies bacterial community composition and affects CH<sub>4</sub> and N<sub>2</sub>O production in sub-arctic mining pond sediments.
Hellman M., Bonilla-Rosso G., Widerlund A., Juhanson J., Hallin S., 2019/07/01. Water Research, 158 pp. 22-33. Peer-reviewed.
 
High dietary fat intake induces a microbiota signature that promotes food allergy.
Hussain M., Bonilla-Rosso G., Kwong Chung CKC, Bäriswyl L., Rodriguez M.P., Kim B.S., Engel P., Noti M., 2019/07. The Journal of allergy and clinical immunology, 144 (1) pp. 157-170.e8. Peer-reviewed.
Refining the Pneumococcal Competence Regulon by RNA Sequencing.
Slager J., Aprianto R., Veening J.W., 2019/07/01. Journal of bacteriology, 201 (13). Peer-reviewed.
Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element.
Delavat F., Moritz R., van der Meer J.R., 2019/06/11. mBio, 10 (3). Peer-reviewed.
Molecular mechanisms of chemotropism and cell fusion in unicellular fungi.
Martin S.G., 2019/05/31. Journal of cell science, 132 (11). Peer-reviewed.
Three New Integration Vectors and Fluorescent Proteins for Use in the Opportunistic Human Pathogen Streptococcus pneumoniae.
Keller L.E., Rueff A.S., Kurushima J., Veening J.W., 2019/05/22. Genes, 10 (5) p. 394. Peer-reviewed.
Multi-phosphorylation reaction and clustering tune Pom1 gradient mid-cell levels according to cell size.
Gerganova V., Floderer C., Archetti A., Michon L., Carlini L., Reichler T., Manley S., Martin S.G., 2019/05/03. eLife, 8 pp. e45983. Peer-reviewed.
 
Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.
Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.
 
The urgent need for microbiology literacy in society.
Timmis K., Cavicchioli R., Garcia J.L., Nogales B., Chavarría M., Stein L., McGenity T.J., Webster N., Singh B.K., Handelsman J. et al., 2019/05. Environmental microbiology, 21 (5) pp. 1513-1528. Peer-reviewed.
 
Infectiologie sur mesure - 2. Phagothérapie : de la théorie à l’évidence clinique [Customised infectiology - Phage therapy: from theory to clinical evidence]
Desgranges F., Bochud P.Y., Resch G., 2019/04/10. Revue medicale suisse, 15 (646) pp. 771-775. Peer-reviewed.
 
Assessing evolutionary risks of resistance for new antimicrobial therapies.
Brockhurst M.A., Harrison F., Veening J.W., Harrison E., Blackwell G., Iqbal Z., Maclean C., 2019/04. Nature ecology & evolution, 3 (4) pp. 515-517. Peer-reviewed.
Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies.
Szenteczki M.A., Pitteloud C., Casacci L.P., Kešnerová L., Whitaker MRL, Engel P., Vila R., Alvarez N., 2019/04. Ecology and evolution, 9 (8) pp. 4452-4464. Peer-reviewed.
Genotypes of Staphylococcus aureus: On-farm epidemiology and the consequences for prevention of intramammary infections.
Leuenberger A., Sartori C., Boss R., Resch G., Oechslin F., Steiner A., Moreillon P., Graber H.U., 2019/04. Journal of dairy science, 102 (4) pp. 3295-3309. Peer-reviewed.
Persistence of root-colonizing Pseudomonas protegens in herbivorous insects throughout different developmental stages and dispersal to new host plants.
Flury P., Vesga P., Dominguez-Ferreras A., Tinguely C., Ullrich C.I., Kleespies R.G., Keel C., Maurhofer M., 2019/04. The ISME journal, 13 (4) pp. 860-872. Peer-reviewed.
Using Synthetic Biology to Engineer Spatial Patterns.
Santos-Moreno J., Schaerli Y., 2019/04. Advanced biosystems, 3 (4) pp. e1800280. Peer-reviewed.
Yeast-to-hypha transition of Schizosaccharomyces japonicus in response to environmental stimuli.
Kinnaer C., Dudin O., Martin S.G., 2019/04/01. Molecular biology of the cell, 30 (8) pp. 975-991. Peer-reviewed.
Multilayered control of chromosome replication in Caulobacter crescentus.
Frandi A., Collier J., 2019/02/28. Biochemical Society transactions, 47 (1) pp. 187-196. Peer-reviewed.
Protecting maize from rootworm damage with the combined application of arbuscular mycorrhizal fungi, Pseudomonas bacteria and entomopathogenic nematodes.
Jaffuel G., Imperiali N., Shelby K., Campos-Herrera R., Geisert R., Maurhofer M., Loper J., Keel C., Turlings TCJ, Hibbard B.E., 2019/02/28. Scientific reports, 9 (1) p. 3127. Peer-reviewed.
Genomic diversity landscape of the honey bee gut microbiota.
Ellegaard K.M., Engel P., 2019/01/25. Nature communications, 10 (1) p. 446. Peer-reviewed.
Challenges in Clinical Metaproteomics Highlighted by the Analysis of Acute Leukemia Patients with Gut Colonization by Multidrug-Resistant Enterobacteriaceae.
Rechenberger J., Samaras P., Jarzab A., Behr J., Frejno M., Djukovic A., Sanz J., González-Barberá E.M., Salavert M., López-Hontangas J.L. et al., 2019/01/08. Proteomes, 7 (1). Peer-reviewed.
Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities.
Pinto-Figueroa E.A., Seddon E., Yashiro E., Buri A., Niculita-Hirzel H., van der Meer J.R., Guisan A., 2019. Frontiers in microbiology, 10 p. 656. Peer-reviewed.
Bridging the Holistic-Reductionist Divide in Microbial Ecology.
Tecon R., Mitri S., Ciccarese D., Or D., van der Meer J.R., Johnson D.R., 2019. mSystems, 4 (1) pp. e00265-18. Peer-reviewed.
Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire.
Essoh C., Vernadet J.P., Vergnaud G., Coulibaly A., Kakou-N'Douba A., N'Guetta A.S., Resch G., Pourcel C., 2019/01. Microbiology resource announcements, 8 (1). Peer-reviewed.
 
Efficacy and tolerability of a cocktail of bacteriophages to treat burn wounds infected by Pseudomonas aeruginosa (PhagoBurn): a randomised, controlled, double-blind phase 1/2 trial.
Jault P., Leclerc T., Jennes S., Pirnay J.P., Que Y.A., Resch G., Rousseau A.F., Ravat F., Carsin H., Le Floch R. et al., 2019/01. The Lancet. Infectious diseases, 19 (1) pp. 35-45. Peer-reviewed.
 
Exploration of multiclass and one-class learning methods for prediction of phage-bacteria interaction at strain level
Carvalho Leite Diogo Manuel, Lopez Juan Fernando, Brochet Xavier, Barreto-Sanz Miguel, Que Yok-Ai, Resch Grégory, Peña-Reyes Carlos, 2019. dans Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018.
 
High-Throughput Allelic Replacement Screening in Bacillus subtilis.
Diebold-Durand M.L., Bürmann F., Gruber S., 2019. Methods in molecular biology, 2004 pp. 49-61. Peer-reviewed.
 
La nouvelle OAAE : état des lieux et appréciation critique au regard du droit fédéral et du droit vaudois
Viviane David, Favrod-Coune Pascal, Kiepe Maya, Martin Sophie, 2019. not@lex 2019, p. 59 ss .
Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions.
Roggo C., Carraro N., van der Meer J.R., 2019. Scientific Reports, 9 (1) p. 3845. Peer-reviewed.
Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa.
Testa S., Berger S., Piccardi P., Oechslin F., Resch G., Mitri S., 2019. Communications biology, 2 p. 405. Peer-reviewed.
T6SS contributes to gut microbiome invasion and killing of an herbivorous pest insect by plant-beneficial Pseudomonas protegens.
Vacheron J., Péchy-Tarr M., Brochet S., Heiman C.M., Stojiljkovic M., Maurhofer M., Keel C., 2019. The ISME Journal, 13 (5) pp. 1318-1329. Peer-reviewed.
Temperate Prophages Increase Bacterial Adhesin Expression and Virulence in an Experimental Model of Endocarditis Due to Staphylococcus aureus From the CC398 Lineage.
Laumay F., Corvaglia A.R., Diene S.M., Girard M., Oechslin F., van der Mee-Marquet N., Entenza J.M., François P., 2019. Frontiers in microbiology, 10 p. 742. Peer-reviewed.
 
The evolutionary game of interspecific mutualism in the multi-species model.
Shibasaki S., 2019. Journal of Theoretical Biology, 471 pp. 51-58. Peer-reviewed.
Differential GAP requirement for Cdc42-GTP polarization during proliferation and sexual reproduction.
Gallo Castro D., Martin S.G., 2018/12/03. The Journal of cell biology, 217 (12) pp. 4215-4229. Peer-reviewed.
Adaptation to DNA damage checkpoint in senescent telomerase-negative cells promotes genome instability.
Coutelier H., Xu Z., Morisse M.C., Lhuillier-Akakpo M., Pelet S., Charvin G., Dubrana K., Teixeira M.T., 2018/12/01. Genes & development, 32 (23-24) pp. 1499-1513. Peer-reviewed.
Antibiotic-Induced Cell Chaining Triggers Pneumococcal Competence by Reshaping Quorum Sensing to Autocrine-Like Signaling.
Domenech A., Slager J., Veening J.W., 2018/11/27. Cell reports, 25 (9) pp. 2390-2400.e3. Peer-reviewed.
Membrane association and remodeling by intraflagellar transport protein IFT172.
Wang Q., Taschner M., Ganzinger K.A., Kelley C., Villasenor A., Heymann M., Schwille P., Lorentzen E., Mizuno N., 2018/11/08. Nature communications, 9 (1) p. 4684. Peer-reviewed.
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.
Slager J., Aprianto R., Veening J.W., 2018/11/02. Nucleic acids research, 46 (19) pp. 9971-9989. Peer-reviewed.
High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions.
Aprianto R., Slager J., Holsappel S., Veening J.W., 2018/11/02. Nucleic acids research, 46 (19) pp. 9990-10006. Peer-reviewed.
The CcmC-CcmE interaction during cytochrome c maturation by System I is driven by protein-protein and not protein-heme contacts.
Shevket S.H., Gonzalez D., Cartwright J.L., Kleanthous C., Ferguson S.J., Redfield C., Mavridou DAI, 2018/10/26. The Journal of biological chemistry, 293 (43) pp. 16778-16790. Peer-reviewed.
 
Solar photo-Fenton disinfection of 11 antibiotic-resistant bacteria (ARB) and elimination of representative AR genes. Evidence that antibiotic resistance does not imply resistance to oxidative treatment.
Giannakis S., Le T.M., Entenza J.M., Pulgarin C., 2018/10/15. Water research, 143 pp. 334-345. Peer-reviewed.
Control of proline utilization by the Lrp-like regulator PutR in Caulobacter crescentus.
Mouammine A., Eich K., Frandi A., Collier J., 2018/10/02. Scientific reports, 8 (1) p. 14677. Peer-reviewed.
Direct induction of microtubule branching by microtubule nucleation factor SSNA1.
Basnet N., Nedozralova H., Crevenna A.H., Bodakuntla S., Schlichthaerle T., Taschner M., Cardone G., Janke C., Jungmann R., Magiera M.M. et al., 2018/10. Nature cell biology, 20 (10) pp. 1172-1180. Peer-reviewed.
Eavesdropping and crosstalk between secreted quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae.
Miller E.L., Kjos M., Abrudan M.I., Roberts I.S., Veening J.W., Rozen D.E., 2018/10. The ISME journal, 12 (10) pp. 2363-2375. Peer-reviewed.
Function of BriC peptide in the pneumococcal competence and virulence portfolio.
Aggarwal S.D., Eutsey R., West-Roberts J., Domenech A., Xu W., Abdullah I.T., Mitchell A.P., Veening J.W., Yesilkaya H., Hiller N.L., 2018/10. PLoS pathogens, 14 (10) pp. e1007328. Peer-reviewed.
The impact of DNA methylation in Alphaproteobacteria.
Mouammine A., Collier J., 2018/10. Molecular microbiology, 110 (1) pp. 1-10. Peer-reviewed.
Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.
Schaerli Y., Jiménez A., Duarte J.M., Mihajlovic L., Renggli J., Isalan M., Sharpe J., Wagner A., 2018/09/10. Molecular systems biology, 14 (9) pp. e8102. Peer-reviewed.
 
CozEa and CozEb play overlapping and essential roles in controlling cell division in Staphylococcus aureus.
Stamsås G.A., Myrbråten I.S., Straume D., Salehian Z., Veening J.W., Håvarstein L.S., Kjos M., 2018/09. Molecular microbiology, 109 (5) pp. 615-632. Peer-reviewed.
 
Metagenome analysis of Russian and Georgian Pyophage cocktails and a placebo-controlled safety trial of single phage versus phage cocktail in healthy Staphylococcus aureus carriers.
McCallin S., Sarker S.A., Sultana S., Oechslin F., Brüssow H., 2018/09. Environmental microbiology, 20 (9) pp. 3278-3293. Peer-reviewed.
Conservation tillage and organic farming induce minor variations in Pseudomonas abundance, their antimicrobial function and soil disease resistance.
Dennert F., Imperiali N., Staub C., Schneider J., Laessle T., Zhang T., Wittwer R., van der Heijden MGA, Smits THM, Schlaeppi K. et al., 2018/08/01. FEMS microbiology ecology, 94 (8) p. 1. Peer-reviewed.
 
Gamete fusion triggers bipartite transcription factor assembly to block re-fertilization.
Vještica A., Merlini L., Nkosi P.J., Martin S.G., 2018/08. Nature, 560 (7718) pp. 397-400. Peer-reviewed.
 
Handling unpredictable ecosystems.
Niehus R., Mitri S., 2018/08. Nature ecology & evolution, 2 (8) pp. 1207-1208. Peer-reviewed.
Bacterial Microcolonies in Gel Beads for High-throughput Screening.
Schaerli Y., 2018/07/05. Bio-Protocol, 8 (13) pp. e2911. Peer-reviewed.
 
Assessment of the Dual Role of Clumping Factor A in S. Aureus Adhesion to Endothelium in Absence and Presence of Plasma.
Claes J., Ditkowski B., Liesenborghs L., Veloso T.R., Entenza J.M., Moreillon P., Vanassche T., Verhamme P., Hoylaerts M.F., Heying R., 2018/07. Thrombosis and haemostasis, 118 (7) pp. 1230-1241. Peer-reviewed.
 
Chlamydia trachomatis paralyses neutrophils to evade the host innate immune response.
Rajeeve K., Das S., Prusty B.K., Rudel T., 2018/07. Nature microbiology, 3 (7) pp. 824-835. Peer-reviewed.
Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks.
Khalili B., Merlini L., Vincenzetti V., Martin S.G., Vavylonis D., 2018/07. PLoS computational biology, 14 (7) pp. e1006317. Peer-reviewed.
Author Correction: Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/06/19. Nature communications, 9 (1) p. 2440. Peer-reviewed.
 
Cooperation, competition and antibiotic resistance in bacterial colonies.
Frost I., Smith WPJ, Mitri S., Millan A.S., Davit Y., Osborne J.M., Pitt-Francis J.M., MacLean R.C., Foster K.R., 2018/06. The ISME journal, 12 (6) pp. 1582-1593. Peer-reviewed.
Functional roles and metabolic niches in the honey bee gut microbiota.
Bonilla-Rosso G., Engel P., 2018/06. Current opinion in microbiology, 43 pp. 69-76. Peer-reviewed.
Root-colonizing bacteria enhance the levels of (E)-β-caryophyllene produced by maize roots in response to rootworm feeding.
Chiriboga M X., Guo H., Campos-Herrera R., Röder G., Imperiali N., Keel C., Maurhofer M., Turlings TCJ, 2018/06. Oecologia, 187 (2) pp. 459-468. Peer-reviewed.
Dynamic visits of cortical structures probe for cell size.
Gerganova V., Martin S.G., 2018/05/07. The Journal of cell biology, 217 (5) pp. 1559-1561. Peer-reviewed.
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