Department of Fundamental Microbiology

Publications | Phd and Masters theses

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1114 publications

... | 2018 | 2017 | 2016 | 2015 | 2014 | ...
Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.
Perez-Carrasco R., Barnes C.P., Schaerli Y., Isalan M., Briscoe J., Page K.M., 2018/04/25. Cell systems, 6 (4) pp. 521-530.e3. Peer-reviewed.
Timing of gene expression in a cell-fate decision system.
Aymoz D., Solé C., Pierre J.J., Schmitt M., de Nadal E., Posas F., Pelet S., 2018/04/25. Molecular systems biology, 14 (4) pp. e8024. Peer-reviewed.
Silk Route to the Acceptance and Re-Implementation of Bacteriophage Therapy-Part II.
Expert round table on acceptance and re-implementation of bacteriophage therapy, Sybesma W., Rohde C., Bardy P., Pirnay J.P., Cooper I., Caplin J., Chanishvili N., Coffey A., De Vos D. et al., 2018/04/23. Antibiotics, 7 (2) pp. NA. Peer-reviewed.
Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.
Yashiro E., Pinto-Figueroa E., Buri A., Spangenberg J.E., Adatte T., Niculita-Hirzel H., Guisan A., van der Meer J.R., 2018/04/10. Scientific reports, 8 (1) p. 5758. Peer-reviewed.
 
Autologous Cell Therapy Approach for Duchenne Muscular Dystrophy using PiggyBac Transposons and Mesoangioblasts.
Iyer P.S., Mavoungou L.O., Ronzoni F., Zemla J., Schmid-Siegert E., Antonini S., Neff L.A., Dorchies O.M., Jaconi M., Lekka M. et al., 2018/04/04. Molecular therapy, 26 (4) pp. 1093-1108. Peer-reviewed.
Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element.
Miyazaki R., Yano H., Sentchilo V., van der Meer J.R., 2018/04/03. Scientific reports, 8 (1) p. 5550. Peer-reviewed.
Inhibition of Ras activity coordinates cell fusion with cell-cell contact during yeast mating.
Merlini L., Khalili B., Dudin O., Michon L., Vincenzetti V., Martin S.G., 2018/04/02. The Journal of cell biology, 217 (4) pp. 1467-1483. Peer-reviewed.
 
Editorial overview: Bacterial cell regulation: from genes to complex environments.
Veening J.W., Tamayo R., 2018/04. Current opinion in microbiology, 42 pp. 110-114. Peer-reviewed.
 
SMC complexes sweeping through the chromosome: going with the flow and against the tide.
Gruber S., 2018/04. Current opinion in microbiology, 42 pp. 96-103. Peer-reviewed.
Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/03/06. Nature communications, 9 (1) p. 964. Peer-reviewed.
Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa.
Sonnleitner E., Wulf A., Campagne S., Pei X.Y., Wolfinger M.T., Forlani G., Prindl K., Abdou L., Resch A., Allain F.H. et al., 2018/02/16. Nucleic acids research, 46 (3) pp. 1470-1485. Peer-reviewed.
 
Ceftazidime/avibactam alone or in combination with aztreonam against colistin-resistant and carbapenemase-producing Klebsiella pneumoniae.
Jayol A., Nordmann P., Poirel L., Dubois V., 2018/02/01. The Journal of antimicrobial chemotherapy, 73 (2) pp. 542-544. Peer-reviewed.
 
CHROMagar mSuperCARBA and RAPIDEC® Carba NP test for detection of carbapenemase-producing Enterobacteriaceae.
Garcia-Quintanilla M., Poirel L., Nordmann P., 2018/02. Diagnostic microbiology and infectious disease, 90 (2) pp. 77-80. Peer-reviewed.
 
Lifestyle transitions and adaptive pathogenesis of Pseudomonas aeruginosa.
Valentini M., Gonzalez D., Mavridou D.A., Filloux A., 2018/02. Current opinion in microbiology, 41 pp. 15-20. Peer-reviewed.
 
Origin and Evolution of the Bartonella Gene Transfer Agent.
Tamarit D., Neuvonen M.M., Engel P., Guy L., Andersson SGE, 2018/02/01. Molecular biology and evolution, 35 (2) pp. 451-464. Peer-reviewed.
Mucosal Infections and Invasive Potential of Nonencapsulated <i>Streptococcus pneumoniae</i> Are Enhanced by Oligopeptide Binding Proteins AliC and AliD.
Bradshaw J.L., Pipkins H.R., Keller L.E., Pendarvis J.K., McDaniel L.S., 2018/01/16. mBio, 9 (1) pp. e02097-17. Peer-reviewed.
The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains.
Pfeiffer F., Zamora-Lagos M.A., Blettinger M., Yeroslaviz A., Dahl A., Gruber S., Habermann B.H., 2018/01/05. BMC genomics, 19 (1) p. 20. Peer-reviewed.
 
Bacterial bioreporter detection of arsenic associated with iron oxides.
van Genuchten C.M., Finger A., van der Meer J.R., Peña J., 2018. Environmental Science. Processes & Impacts, 20 (6) pp. 913-922. Peer-reviewed.
Computational prediction of inter-species relationships through omics data analysis and machine learning.
Leite DMC, Brochet X., Resch G., Que Y.A., Neves A., Peña-Reyes C., 2018. BMC Bioinformatics, 19 (Suppl 14) p. 420. Peer-reviewed.
Costs and benefits of provocation in bacterial warfare.
Gonzalez D., Sabnis A., Foster K.R., Mavridou DAI, 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (29) pp. 7593-7598. Peer-reviewed.
Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains.
Rohde C., Resch G., Pirnay J.P., Blasdel B.G., Debarbieux L., Gelman D., Górski A., Hazan R., Huys I., Kakabadze E. et al., 2018. Viruses, 10 (4) pp. 1-15. Peer-reviewed.
Genome Sequence of the Pseudomonas protegens Phage ΦGP100.
Vacheron J., Kupferschmied P., Resch G., Keel C., 2018. Genome Announcements, 6 (25) pp. e00261-18. Peer-reviewed.
Genomic Islands Confer Heavy Metal Resistance in <i>Mucilaginibacter kameinonensis</i> and <i>Mucilaginibacter rubeus</i> Isolated from a Gold/Copper Mine.
Li Y.P., Carraro N., Yang N., Liu B., Xia X., Feng R., Saquib Q., Al-Wathnani H.A., van der Meer J.R., Rensing C., 2018. Genes, 9 (12) p. 573. Peer-reviewed.
Gut colonization by a novel Clostridium species is associated with the onset of epizootic rabbit enteropathy.
Djukovic A., Garcia-Garcera M., Martínez-Paredes E., Isaac S., Artacho A., Martínez J., Ubeda C., 2018. Veterinary Research, 49 (1) p. 123. Peer-reviewed.
Gut microbiota composition is associated with environmental landscape in honey bees.
Jones J.C., Fruciano C., Hildebrand F., Al Toufalilia H., Balfour N.J., Bork P., Engel P., Ratnieks F.L., Hughes W.O., 2018. Ecology and Evolution, 8 (1) pp. 441-451. Peer-reviewed.
 
Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds.
Roggo C., Clerc E.E., Hadadi N., Carraro N., Stocker R., van der Meer J.R., 2018. Applied and Environmental Microbiology, 84 (18) pp. UNSP e01362-18. Peer-reviewed.
Host diet mediates a negative relationship between abundance and diversity of <i>Drosophila</i> gut microbiota.
Erkosar B., Yashiro E., Zajitschek F., Friberg U., Maklakov A.A., van der Meer J.R., Kawecki T.J., 2018. Ecology and Evolution, 8 (18) pp. 9491-9502. Peer-reviewed.
In vitro characterization of PlyE146, a novel phage lysin that targets Gram-negative bacteria.
Larpin Y., Oechslin F., Moreillon P., Resch G., Entenza J.M., Mancini S., 2018. PloS one, 13 (2) pp. e0192507. Peer-reviewed.
 
Increased Virulence of an Encapsulated Streptococcus pneumoniae Upon Expression of Pneumococcal Surface Protein K.
Pipkins H.R., Bradshaw J.L., Keller L.E., McDaniel L.S., 2018. The Journal of Infectious Diseases, 217 (10) pp. 1637-1644. Peer-reviewed.
Marginal role of von Willebrand factor-binding protein and coagulase in the initiation of endocarditis in rats with catheter-induced aortic vegetations.
Mancini S., Oechslin F., Menzi C., Que Y.A., Claes J., Heying R., Veloso T.R., Vanassche T., Missiakas D., Schneewind O. et al., 2018. Virulence, 9 (1) pp. 1615-1624. Peer-reviewed.
New Reference Genome Sequences for 17 Bacterial Strains of the Honey Bee Gut Microbiota.
Ellegaard K.M., Engel P., 2018. Microbiology Resource Announcements, 7 (3). Peer-reviewed.
Optimization of sample preparation and green color imaging using the mNeonGreen fluorescent protein in bacterial cells for photoactivated localization microscopy.
Stockmar I., Feddersen H., Cramer K., Gruber S., Jung K., Bramkamp M., Shin J.Y., 2018. Scientific Reports, 8 (1) p. 10137. Peer-reviewed.
 
Prospects for harnessing biocide resistance for bioremediation and detoxification.
Atashgahi S., Sánchez-Andrea I., Heipieper H.J., van der Meer J.R., Stams AJM, Smidt H., 2018. Science, 360 (6390) pp. 743-746. Peer-reviewed.
Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips.
Roggo C., Picioreanu C., Richard X., Mazza C., van Lintel H., van der Meer J.R., 2018/01. Environmental microbiology, 20 (1) pp. 241-258. Peer-reviewed.
Resistance Development to Bacteriophages Occurring during Bacteriophage Therapy.
Oechslin F., 2018. Viruses, 10 (7) p. 351. Peer-reviewed.
 
Role of the Endocytosis of Caveolae in Intracellular Signaling and Metabolism.
Muriel O., Sánchez-Álvarez M., Strippoli R., Del Pozo M.A., 2018. Progress in molecular and subcellular biology, 57 pp. 203-234. Peer-reviewed.
The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines.
Payelleville A., Legrand L., Ogier J.C., Roques C., Roulet A., Bouchez O., Mouammine A., Givaudan A., Brillard J., 2018. Scientific Reports, 8 (1) p. 12091. Peer-reviewed.
The gut microbiome is associated with behavioural task in honey bees
Jones J. C., Fruciano C., Marchant J., Hildebrand F., Forslund S., Bork P., Engel P., Hughes W. O. H., 2018. Insectes Sociaux, 65 (3) pp. 419-429. Peer-reviewed.
Disentangling metabolic functions of bacteria in the honey bee gut.
Kešnerová L., Mars RAT, Ellegaard K.M., Troilo M., Sauer U., Engel P., 2017/12. PLoS biology, 15 (12) pp. e2003467. Peer-reviewed.
Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.
Duarte J.M., Barbier I., Schaerli Y., 2017/11/17. ACS synthetic biology, 6 (11) pp. 1988-1995. Peer-reviewed.
Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in <i>Drosophila melanogaster</i>.
Erkosar B., Kolly S., van der Meer J.R., Kawecki T.J., 2017/10/24. mBio, 8 (5) pp. e01496-17. Peer-reviewed.
Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence.
Moreno-Gámez S., Sorg R.A., Domenech A., Kjos M., Weissing F.J., van Doorn G.S., Veening J.W., 2017/10/11. Nature communications, 8 (1) p. 854. Peer-reviewed.
 
Live Cell Imaging of the Schizosaccharomyces pombe Sexual Life Cycle.
Merlini L., Vjestica A., Dudin O., Bendezú F., Martin S.G., 2017/10/03. Cold Spring Harbor protocols, 2017 (10) pp. pdb.prot090225. Peer-reviewed.
A bacterial toxin-antitoxin module is the origin of inter-bacterial and inter-kingdom effectors of Bartonella.
Harms A., Liesch M., Körner J., Québatte M., Engel P., Dehio C., 2017/10. PLoS genetics, 13 (10) pp. e1007077. Peer-reviewed.
 
Nitrogen conservation, conserved: 46 million years of N-recycling by the core symbionts of turtle ants
Hu Yi, Sanders Jon G., Łukasik Piotr, D'Amelio Catherine L., Millar John S., Vann David R., Lan Yemin, Newton Justin A., Schotanus Mark, Wertz John T. et al., 2017/09/07..
 
Hafnia, an enterobacterial genus naturally resistant to colistin revealed by three susceptibility testing methods.
Jayol A., Saly M., Nordmann P., Ménard A., Poirel L., Dubois V., 2017/09/01. The Journal of antimicrobial chemotherapy, 72 (9) pp. 2507-2511. Peer-reviewed.
 
In Vitro Polymerization of F-actin on Early Endosomes.
Muriel O., Scott C.C., Larios J., Mercier V., Gruenberg J., 2017/08/28. Journal of visualized experiments 126 p. 126. Peer-reviewed.
Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance.
Reimer A., Maffenbeier V., Dubey M., Sentchilo V., Tavares D., Gil M.H., Beggah S., van der Meer J.R., 2017/08/15. Scientific reports, 7 (1) p. 8245. Peer-reviewed.
Chromosome segregation drives division site selection in Streptococcus pneumoniae.
van Raaphorst R., Kjos M., Veening J.W., 2017/07/18. Proceedings of the National Academy of Sciences of the United States of America, 114 (29) pp. E5959-E5968. Peer-reviewed.
 
Transcriptional Repressor PtvR Regulates Phenotypic Tolerance to Vancomycin in Streptococcus pneumoniae.
Liu X., Li J.W., Feng Z., Luo Y., Veening J.W., Zhang J.R., 2017/07/15. Journal of bacteriology, 199 (14) pp. UNSP e00054-17. Peer-reviewed.
 
Editorial overview: Environmental biotechnology.
van der Meer J.R., Gu M.B., 2017/06. Current opinion in biotechnology, 45 pp. ix-xi. Peer-reviewed.
 
Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.
Roggo C., van der Meer J.R., 2017/06. Current opinion in biotechnology, 45 pp. 24-33. Peer-reviewed.
 
Relocation sensors to quantify signaling dynamics in live single cells.
Wosika V., Pelet S., 2017/06. Current opinion in biotechnology, 45 pp. 51-58. Peer-reviewed.
 
Shaping chromosomes by DNA capture and release: gating the SMC rings.
Gruber S., 2017/06. Current opinion in cell biology, 46 pp. 87-93. Peer-reviewed.
 
The evolution of siderophore production as a competitive trait.
Niehus R., Picot A., Oliveira N.M., Mitri S., Foster K.R., 2017/06. Evolution; international journal of organic evolution, 71 (6) pp. 1443-1455. Peer-reviewed.
 
Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation.
Berset Y., Merulla D., Joublin A., Hatzimanikatis V., van der Meer J.R., 2017/05/19. ACS synthetic biology, 6 (5) pp. 862-874. Peer-reviewed.
High-throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae.
Liu X., Gallay C., Kjos M., Domenech A., Slager J., van Kessel S.P., Knoops K., Sorg R.A., Zhang J.R., Veening J.W., 2017/05/10. Molecular systems biology, 13 (5) p. 931. Peer-reviewed.
 
Clumping factor A, von Willebrand factor-binding protein and von Willebrand factor anchor Staphylococcus aureus to the vessel wall.
Claes J., Liesenborghs L., Peetermans M., Veloso T.R., Missiakas D., Schneewind O., Mancini S., Entenza J.M., Hoylaerts M.F., Heying R. et al., 2017/05. Journal of thrombosis and haemostasis, 15 (5) pp. 1009-1019. Peer-reviewed.
Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen.
Segers F.H., Kešnerová L., Kosoy M., Engel P., 2017/05. The ISME journal, 11 (5) pp. 1232-1244. Peer-reviewed.
 
Immune system stimulation by the gut symbiont Frischella perrara in the honey bee (Apis mellifera).
Emery O., Schmidt K., Engel P., 2017/05. Molecular ecology, 26 (9) pp. 2576-2590. Peer-reviewed.
Nuclear relocation of Kss1 contributes to the specificity of the mating response.
Pelet S., 2017/03/06. Scientific reports, 7 p. 43636. Peer-reviewed.
Synergistic Interaction Between Phage Therapy and Antibiotics Clears Pseudomonas Aeruginosa Infection in Endocarditis and Reduces Virulence.
Oechslin F., Piccardi P., Mancini S., Gabard J., Moreillon P., Entenza J.M., Resch G., Que Y.A., 2017/03/01. The Journal of infectious diseases, 215 (5) pp. 703-712. Peer-reviewed.
Caulobacter crescentus CdnL is a non-essential RNA polymerase-binding protein whose depletion impairs normal growth and rRNA transcription.
Gallego-García A., Iniesta A.A., González D., Collier J., Padmanabhan S., Elías-Arnanz M., 2017/02/24. Scientific reports, 7 p. 43240. Peer-reviewed.
 
Physiological and Transcriptome Response of the Polycyclic Aromatic Hydrocarbon Degrading Novosphingobium sp. LH128 after Inoculation in Soil.
Fida T.T., Moreno-Forero S.K., Breugelmans P., Heipieper H.J., Röling W.F., Springael D., 2017/02/07. Environmental science & technology, 51 (3) pp. 1570-1579. Peer-reviewed.
 
Ancient Heavy Metal Contamination in Soils as a Driver of Tolerant Anthyllis vulneraria Rhizobial Communities.
Mohamad R., Maynaud G., Le Quéré A., Vidal C., Klonowska A., Yashiro E., Cleyet-Marel J.C., Brunel B., 2017/01/15. Applied and environmental microbiology, 83 (2) pp. e01735-16. Peer-reviewed.
 
Neutrophilic NLRP3 inflammasome-dependent IL-1β secretion regulates the γδT17 cell response in respiratory bacterial infections
M Hassane, D Demon, D Soulard, J Fontaine, L E Keller, E C Patin, R Porte, I Prinz, B Ryffel, A Kadioglu et al., 2017/01/04. Mucosal Immunology.
 
A Chromosome Co-Entrapment Assay to Study Topological Protein-DNA Interactions.
Wilhelm L., Gruber S., 2017. Methods in molecular biology, 1624 pp. 117-126. Peer-reviewed.
A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O., Merlini L., Bendezú F.O., Groux R., Vincenzetti V., Martin S.G., 2017. PLoS Genetics, 13 (4) pp. e1006721. Peer-reviewed.
Antimicrobial and Insecticidal: Cyclic Lipopeptides and Hydrogen Cyanide Produced by Plant-Beneficial Pseudomonas Strains CHA0, CMR12a, and PCL1391 Contribute to Insect Killing.
Flury P., Vesga P., Péchy-Tarr M., Aellen N., Dennert F., Hofer N., Kupferschmied K.P., Kupferschmied P., Metla Z., Ma Z. et al., 2017. Frontiers in microbiology, 8 p. 100. Peer-reviewed.
 
Automated microfluidic sorting of mammalian cells labeled with magnetic microparticles for those that efficiently express and secrete a protein of interest
Droz X., Harraghy N., Lançon E., Le Fourn V., Calabrese D., Colombet T., Liechti P., Rida A., Girod P.A., Mermod N., 2017. Biotechnology and Bioengineering, 114 (8) pp. 1791-1802. Peer-reviewed.
 
Bicyclic enol cyclocarbamates inhibit penicillin-binding proteins
Dockerty Paul, Edens Jerre, Tol Menno, Angeles Danae, Domenech Arnau, Liu Yin, Hirsch Anna, Veening Jan-Willem, Scheffers Dirk-Jan, Witte Martin, 2017. Organic & Biomolecular Chemistry.
Combined Field Inoculations of Pseudomonas Bacteria, Arbuscular Mycorrhizal Fungi, and Entomopathogenic Nematodes and their Effects on Wheat Performance
Imperiali N., Chiriboga X., Schlaeppi K., Fesselet M., Villacrés D., Jaffuel G., Bender S.F., Dennert F., Blanco-Pérez R., van der Heijden M.G.A. et al., 2017. Frontiers in Plant Science, 8 p. 1809. Peer-reviewed.
 
Computational Prediction of Host-Pathogen Interactions Through Omics Data Analysis and Machine Learning
Carvalho Leite D.M., Brochet X., Resch G., Que Y.A., Neves A., Peña-Reyes C., 2017. Bioinformatics and Biomedical Engineering, 10209 pp. 360-371. Peer-reviewed.
Distribution of 2,4-Diacetylphloroglucinol Biosynthetic Genes among the Pseudomonas spp. Reveals Unexpected Polyphyletism.
Almario J., Bruto M., Vacheron J., Prigent-Combaret C., Moënne-Loccoz Y., Muller D., 2017. Frontiers in Microbiology, 8 p. 1218. Peer-reviewed.
Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.
Lumactud R., Fulthorpe R., Sentchilo V., van der Meer J.R., 2017. Genome Announcements, 5 (21) pp. e00434-17. Peer-reviewed.
Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.
Lumactud R., Fulthorpe R., Sentchilo V., van der Meer J.R., 2017. Genome announcements, 5 (17) p. 0. Peer-reviewed.
 
Dynamics of signal transduction in single cells quantified by microscopy
Ma M., Mira N., Pelet S., 2017. pp. 289-318 dans Nielsen J., Hohmann S. (eds.) Systems Biology chap. 11, Wiley-VCH.
Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella.
Harms A., Segers F.H., Quebatte M., Mistl C., Manfredi P., Körner J., Chomel B.B., Kosoy M., Maruyama S., Engel P. et al., 2017. Genome Biology and Evolution, 9 (3) pp. 761-776. Peer-reviewed.
 
Fungicidal activity of copper-sputtered flexible surfaces under dark and actinic light against azole-resistant Candida albicans and Candida glabrata.
Ballo MKS, Rtimi S., Kiwi J., Pulgarin C., Entenza J.M., Bizzini A., 2017. Journal of Photochemistry and Photobiology. B, Biology, 174 pp. 229-234. Peer-reviewed.
 
Interbacterial predation as a strategy for DNA acquisition in naturally competent bacteria.
Veening J.W., Blokesch M., 2017. Nature Reviews. Microbiology, 15 (10) pp. 621-629. Peer-reviewed.
MAR-Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering.
Kostyrko K., Neuenschwander S., Junier T., Regamey A., Iseli C., Schmid-Siegert E., Bosshard S., Majocchi S., Le Fourn V., Girod P.A. et al., 2017. Biotechnology and Bioengineering, 114 (2) pp. 384-396. Peer-reviewed.
Mobilizable genomic islands, different strategies for the dissemination of multidrug resistance and other adaptive traits.
Carraro N., Rivard N., Burrus V., Ceccarelli D., 2017. Mobile Genetic Elements, 7 (2) pp. 1-6. Peer-reviewed.
 
Muropeptide signature of inhibitors of protein synthesis correlates with β-lactam synergism against methicillin-resistant Staphylococcus aureus.
Guignard B., Majcherczyk P.A., Monachon C., Vouillamoz J., Moreillon P., 2017. International Journal of Antimicrobial Agents, 49 (1) pp. 53-61. Peer-reviewed.
 
Nuclear displacement and fluorescence recovery after photobleaching (FRAP) assays to study division site placement and cytokinesis in fission yeast.
Ullal P., Bhatia P., Martin S.G., 2017. pp. 341-353 dans Cytokinesis, Elsevier.
 
Pentapeptide-rich peptidoglycan at the Bacillus subtilis cell-division site.
Morales Angeles D., Liu Y., Hartman A.M., Borisova M., de Sousa Borges A., de Kok N., Beilharz K., Veening J.W., Mayer C., Hirsch A.K. et al., 2017. Molecular Microbiology, 104 (2) pp. 319-333. Peer-reviewed.
 
Phage Therapy: A New Horizon in the Antibacterial Treatment of Oral Pathogens.
Shlezinger M., Khalifa L., Houri-Haddad Y., Coppenhagen-Glazer S., Resch G., Que Y.A., Beyth S., Dorfman E., Hazan R., Beyth N., 2017. Current topics in medicinal chemistry, 17 (10) pp. 1199-1211. Peer-reviewed.
Phosphorylation of filamin A regulates chemokine receptor CCR2 recycling.
Pons M., Izquierdo I., Andreu-Carbó M., Garrido G., Planagumà J., Muriel O., Del Pozo M.A., Geli M.I., Aragay A.M., 2017. Journal of Cell Science, 130 (2) pp. 490-501. Peer-reviewed.
Purification and characterisation of the yeast plasma membrane ATP binding cassette transporter Pdr11p.
Laub K.R., Marek M., Stanchev L.D., Herrera S.A., Kanashova T., Bourmaud A., Dittmar G., Günther Pomorski T., 2017. PLoS One, 12 (9) pp. e0184236. Peer-reviewed.
 
Recent human history governs global ant invasion dynamics. Nature Ecology & Evolution.
Bertelsmeier C., Ollier S., Liebhold A., Keller L., 2017. Nature Ecology & Evolution, 1 pp. 1-5. Peer-reviewed.
Relationships between Root Pathogen Resistance, Abundance and Expression of Pseudomonas Antimicrobial Genes, and Soil Properties in Representative Swiss Agricultural Soils
Imperiali N., Dennert F., Schneider J., Laessle T., Velatta C., Fesselet M., Wyler M., Mascher F., Mavrodi O., Mavrodi D. et al., 2017. Frontiers in Plant Science, 8 p. 427. Peer-reviewed.
Retraction Notice of the Article: The DYRK-family kinase Pom1 phosphorylates the F-BAR protein Cdc15 to prevent division at cell poles
Ullal P., McDonald N.A., Chen J.S., Lo Presti L., Roberts-Galbraith R.H., Gould K.L., Martin S.G., 2017. The Journal of cell biology, 211 (3) pp. 653-668. Peer-reviewed.
Salmonella genomic island 1 (SGI1) reshapes the mating apparatus of IncC conjugative plasmids to promote self-propagation.
Carraro N., Durand R., Rivard N., Anquetil C., Barrette C., Humbert M., Burrus V., 2017. PLoS Genetics, 13 (3) pp. e1006705. Peer-reviewed.
Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization.
Diebold-Durand M.L., Lee H., Ruiz Avila L.B., Noh H., Shin H.C., Im H., Bock F.P., Bürmann F., Durand A., Basfeld A. et al., 2017. Molecular Cell, 67 (2) pp. 334-347.e5. Peer-reviewed.
The hidden life of integrative and conjugative elements.
Delavat F., Miyazaki R., Carraro N., Pradervand N., van der Meer J.R., 2017. FEMS Microbiology Reviews, 41 (4) pp. 512-537. Peer-reviewed.
 
The trans-envelope architecture and function of the type 2 secretion system: new insights raising new questions.
Thomassin J.L., Santos Moreno J., Guilvout I., Tran Van Nhieu G., Francetic O., 2017. Molecular Microbiology, 105 (2) pp. 211-226. Peer-reviewed.
Tuned SMC Arms Drive Chromosomal Loading of Prokaryotic Condensin.
Bürmann F., Basfeld A., Vazquez Nunez R., Diebold-Durand M.L., Wilhelm L., Gruber S., 2017. Molecular Cell, 65 (5) pp. 861-872.e9. Peer-reviewed.
Antibodies Targeting Hsa and PadA Prevent Platelet Aggregation and Protect Rats against Experimental Endocarditis Induced by Streptococcus gordonii.
Mancini S., Menzi C., Oechslin F., Moreillon P., Entenza J.M., 2016/12. Infection and immunity, 84 (12) pp. 3557-3563. Peer-reviewed.
Collective Resistance in Microbial Communities by Intracellular Antibiotic Deactivation.
Sorg R.A., Lin L., van Doorn G.S., Sorg M., Olson J., Nizet V., Veening J.W., 2016/12. PLoS biology, 14 (12) pp. e2000631. Peer-reviewed.
 
Role and organization of the actin cytoskeleton during cell-cell fusion.
Martin S.G., 2016/12. Seminars in cell & developmental biology, 60 pp. 121-126. Peer-reviewed.
Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.
Kupferschmied P., Chai T., Flury P., Blom J., Smits T.H., Maurhofer M., Keel C., 2016/11. Environmental microbiology, 18 (11) pp. 4265-4281. Peer-reviewed.
A look into the toolbox of multi-talents: insect pathogenicity determinants of plant-beneficial pseudomonads.
Keel C., 2016/10. Environmental microbiology, 18 (10) pp. 3207-3209. Peer-reviewed.
Interspecific cooperation: enhanced growth, attachment and strain-specific distribution in biofilms through Azospirillum brasilense-Pseudomonas protegens co-cultivation.
Pagnussat L.A., Salcedo F., Maroniche G., Keel C., Valverde C., Creus C.M., 2016/10. FEMS microbiology letters, 363 (20) pp. fnw238. Peer-reviewed.
 
Abundance of plant beneficial pseudomonads in the rhizosphere of winter wheat grown in different agricultural management systems
Dennert F., Schneider J., Imperiali N., Mavrodi D., Mavrodi O., 2016/09/12., International Organisation for Biological Control of noxious animals and plants (IOBC) pp. 144-148 dans Köhl Jürgen, Bardin Marc (eds.) IOBC-WPRS Bulletin, IOBC-WPRS.
Towards improved biomonitoring tools for an intensified sustainable multi-use environment.
van der Meer J.R., 2016/09. Microbial biotechnology, 9 (5) pp. 658-665. Peer-reviewed.
The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Engel P., Kwong W.K., McFrederick Q., Anderson K.E., Barribeau S.M., Chandler J.A., Cornman R.S., Dainat J., de Miranda J.R., Doublet V. et al., 2016/04/26. mBio, 7 (2) pp. e02164-15. Peer-reviewed.
Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating.
Merlini L., Khalili B., Bendezú F.O., Hurwitz D., Vincenzetti V., Vavylonis D., Martin S.G., 2016/04/25. Current biology, 26 (8) pp. 1117-1125. Peer-reviewed.
An automated microreactor for semi-continuous biosensor measurements.
Buffi N., Beggah S., Truffer F., Geiser M., van Lintel H., Renaud P., van der Meer J.R., 2016/04/21. Lab on a chip, 16 (8) pp. 1383-1392. Peer-reviewed.
 
Die Bodenbiologie bringt Landwirte und Wissenschaftler zusammen
Marie Fesselet, Jacques Dugon, Thomas Degen, Francesca Dennert, Klaus Schläppi, Geoffrey Jaffuel, Xavier Chiriboga, Monika Maurhofer, Raquel Campos Herrera, Nicola Imperiali et al., 2016/03. Agrarforschung Schweiz, 7 (3) pp. 156-159.
The Evolution of Quorum Sensing as a Mechanism to Infer Kinship.
Schluter J., Schoech A.P., Foster K.R., Mitri S., 2016/03. PLoS computational biology, 12 (4) pp. e1004848. Peer-reviewed.
 
Comparison of differential gene expression to water stress among bacteria with relevant pollutant-degradation properties.
Moreno-Forero S.K., Rojas E., Beggah S., van der Meer J.R., 2016/02. Environmental microbiology reports, 8 (1) pp. 91-102.
 
Pleiotropy and the low cost of individual traits promote cooperation.
Mitri S., Foster K.R., 2016/02. Evolution; international journal of organic evolution, 70 (2) pp. 488-494.
 
Auto Poisoning of the Respiratory Chain by a Quorum-Sensing-Regulated Molecule Favors Biofilm Formation and Antibiotic Tolerance.
Hazan R., Que Y.A., Maura D., Strobel B., Majcherczyk P.A., Hopper L.R., Wilbur D.J., Hreha T.N., Barquera B., Rahme L.G., 2016. Current Biology, 26 (2) pp. 195-206.
 
Bactericidal activity and mechanism of action of copper-sputtered flexible surfaces against multidrug-resistant pathogens.
Ballo M.K., Rtimi S., Mancini S., Kiwi J., Pulgarin C., Entenza J.M., Bizzini A., 2016. Applied Microbiology and Biotechnology, 100 (13) pp. 5945-5953. Peer-reviewed.
Bartonella apis sp. nov., a honey bee gut symbiont of the class Alphaproteobacteria.
Kešnerová L., Moritz R., Engel P., 2016. International Journal of Systematic and Evolutionary Microbiology, 66 (1) pp. 414-421. Peer-reviewed.
Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota.
Ellegaard K.M., Engel P., 2016. Frontiers In Microbiology, 7 p. 1475. Peer-reviewed.
 
Cell cycle control in Alphaproteobacteria.
Collier J., 2016. Current Opinion in Microbiology, 30 pp. 107-113. Peer-reviewed.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
Widder S., Allen R.J., Pfeiffer T., Curtis T.P., Wiuf C., Sloan W.T., Cordero O.X., Brown S.P., Momeni B., Shou W. et al., 2016. The ISME Journal, 10 (11) pp. 2557-2568. Peer-reviewed.
Comparative Genomics Analysis of Streptococcus tigurinus Strains Identifies Genetic Elements Specifically and Uniquely Present in Highly Virulent Strains.
Diene S.M., François P., Zbinden A., Entenza J.M., Resch G., 2016. PloS one, 11 (8) pp. e0160554. Peer-reviewed.
 
Development of Potent and Selective S. aureus Sortase A Inhibitors Based on Peptide Macrocycles.
Rentero Rebollo I., McCallin S., Bertoldo D., Entenza J.M., Moreillon P., Heinis C., 2016. ACS Medicinal Chemistry Letters, 7 (6) pp. 606-611. Peer-reviewed.
 
Fluorescent pseudomonads for joint disease and pest control: just a dream or a real perspective?
Maurhofer M , Imperiali N , Vesga P , Ruffner B , Kupferschmied P , Péchy-Tarr M , Jaffuel G , Dennert F , Löser T , Terrettaz C et al., 2016., International Organisation for Biological Control of noxious animals and plants (IOBC) pp. 235-237 dans Köhl Jürgen , Bardin Marc (eds.) IOBC-WPRS Bulletin, IOBC-WPRS.
Genome-wide screen identifies host colonization determinants in a bacterial gut symbiont.
Powell J.E., Leonard S.P., Kwong W.K., Engel P., Moran N.A., 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (48) pp. 13887-13892. Peer-reviewed.
Heavy metal tolerant Pseudomonas protegens isolates from agricultural well water in northeastern Algeria with plant growth promoting, insecticidal and antifungal activities
Bensidhoum L., Nabti E., Tabli N., Kupferschmied P., Weiss A., Rothballer M., Schmid M., Keel C., Hartmann A., 2016. European Journal of Soil Biology, 75 pp. 38-46. Peer-reviewed.
 
Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element.
Delavat F., Mitri S., Pelet S., van der Meer J.R., 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (24) pp. E3375-E3383. Peer-reviewed.
Immediate ecotoxicological effects of short-lived oil spills on marine biota.
Brussaard C.P., Peperzak L., Beggah S., Wick L.Y., Wuerz B., Weber J., Samuel Arey J., van der Burg B., Jonas A., Huisman J. et al., 2016. Nature Communications, 7 p. 11206. Peer-reviewed.
Improving analytical methods for protein-protein interaction through implementation of chemically inducible dimerization.
Andersen T.G., Nintemann S.J., Marek M., Halkier B.A., Schulz A., Burow M., 2016. Scientific Reports, 6 p. 27766. Peer-reviewed.
 
In vitro and in vivo effectiveness of an innovative silver-copper nanoparticle coating of catheters to prevent methicillin-resistant Staphylococcus aureus infection
Ballo Myriam K.S., Rtimi Sami, Pulgarin César, Hopf Nancy, Berthet Aurélie, Kiwi John, Moreillon Philippe, Entenza José M., Bizzini Alain, 2016. Antimicrobial Agents and Chemotherapy, 60 (9) pp. 5349-5356. Peer-reviewed.
Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics.
Flury P., Aellen N., Ruffner B., Péchy-Tarr M., Fataar S., Metla Z., Dominguez-Ferreras A., Bloemberg G., Frey J., Goesmann A. et al., 2016. The ISME Journal, 10 (10) pp. 2527-2542. Peer-reviewed.
 
La biologie du sol passionne et réunit agriculteurs et scientifiques
Fesselet Marie, Dugon Jacques, Degen Thomas, Dennert Francesca, Schläppi Klaus, Jaffuel Geoffrey, Chiriboga Xavier, Maurhofer Monika, Campos Herrera Raquel, Imperiali Nicola et al., 2016. Recherche Agronomique Suisse, 7 (3) pp. 156-159.
 
Local environmental factors drive divergent grassland soil bacterial communities in the Western Swiss Alps
Yashiro E., Pinto-Figueroa E., Buri A., Spangenberg J.E., Adatte T., Niculita-Hirzel Hélène, Guisan A., van der Meer J.R., 2016. Applied and Environmental Microbiology, 82 (21) pp. 6303-6316. Peer-reviewed.
Metabolism of Toxic Sugars by Strains of the Bee Gut Symbiont Gilliamella apicola.
Zheng H., Nishida A., Kwong W.K., Koch H., Engel P., Steele M.I., Moran N.A., 2016. mBio, 7 (6) pp. e01326-16. Peer-reviewed.
 
Microscopy of Fission Yeast Sexual Lifecycle.
Vjestica A., Merlini L., Dudin O., Bendezu F.O., Martin S.G., 2016. Journal of Visualized Experiments 109 pp. e53801.
New families of single integration vectors and gene tagging plasmids for genetic manipulations in budding yeast.
Wosika V., Durandau E., Varidel C., Aymoz D., Schmitt M., Pelet S., 2016. Molecular Genetics and Genomics, 291 (6) pp. 2231-2240. Peer-reviewed.
 
Oxygen-dependent regulation of c-di-GMP synthesis by SadC controls alginate production in Pseudomonas aeruginosa.
Schmidt A., Hammerbacher A.S., Bastian M., Nieken K.J., Klockgether J., Merighi M., Lapouge K., Poschgan C., Kölle J., Acharya K.R. et al., 2016. Environmental Microbiology, 18 (10) pp. 3390-3402. Peer-reviewed.
 
Probiotic Treatment with a Gut Symbiont Leads to Parasite Susceptibility in Honey Bees.
Schmidt K., Engel P., 2016. Trends in Parasitology, 32 (12) pp. 914-916.
Real-time quantification of protein expression at the single-cell level via dynamic protein synthesis translocation reporters.
Aymoz D., Wosika V., Durandau E., Pelet S., 2016. Nature Communications, 7 p. 11304. Peer-reviewed.
 
Regulatable and modulable background expression control in prokaryotic synthetic circuits by auxiliary repressor binding sites.
Merulla D., van der Meer J.R., 2016. ACS Synthetic Biology, 5 (1) pp. 36-45.
Resource limitation drives spatial organization in microbial groups.
Mitri S., Clarke E., Foster K.R., 2016. ISME Journal, 10 (6) pp. 1471-1482. Peer-reviewed.
Role of post-translational modifications at the β-subunit ectodomain in complex association with a promiscuous plant P4-ATPase.
Costa S.R., Marek M., Axelsen K.B., Theorin L., Pomorski T.G., López-Marqués R.L., 2016. Biochemical Journal, 473 (11) pp. 1605-1615. Peer-reviewed.
Sensitive and fast identification of bacteria in blood samples by immunoaffinity mass spectrometry for quick BSI diagnosis
Zhu Y.D., Qiao L., Prudent M., Bondarenko A., Gasilova N., Moller S.B., Lion N., Pick H., Gong T.Q., Chen Z.X. et al., 2016. Chemical Science, 7 (5) pp. 2897-2995.
Signaling in the Rhizosphere.
Venturi V., Keel C., 2016. Trends in Plant Science, 21 (3) pp. 187-198. Peer-reviewed.
Spatial focalization of pheromone/MAPK signaling triggers commitment to cell-cell fusion.
Dudin O., Merlini L., Martin S.G., 2016. Genes and Development, 30 (19) pp. 2226-2239. Peer-reviewed.
 
The ecology and evolution of microbial competition
Ghoul M., Mitri S., 2016. Trends in Microbiology, 24 (10) pp. 833-845. Peer-reviewed.
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.
Morales M., Sentchilo V., Bertelli C., Komljenovic A., Kryuchkova-Mostacci N., Bourdilloud A., Linke B., Goesmann A., Harshman K., Segers F. et al., 2016. PloS one, 11 (11) pp. e0165850. Peer-reviewed.
Time-resolved dual RNA-seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection.
Aprianto R., Slager J., Holsappel S., Veening J.W., 2016. Genome Biology, 17 (1) p. 198.
 
Warfare in stingless bees
Gruter C., von Zuben L.G., Segers F.H.I.D., Cunningham J.P., 2016. Insectes Sociaux, 63 (2) pp. 223-236.
 
The ParB-parSChromosome Segregation System Modulates Competence Development inStreptococcus pneumoniae
Laetitia Attaiech, Anita Minnen, Morten Kjos, Stephan Gruber, Jan-Willem Veening, 2015/06. mBio.
 
A cell biological view of the siderophore pyochelin iron uptake pathway in Pseudomonas aeruginosa.
Cunrath O., Gasser V., Hoegy F., Reimmann C., Guillon L., Schalk I.J., 2015. Environmental Microbiology, 17 (1) pp. 171-185.
 
A cellular system for spatial signal decoding in chemical gradients.
Hegemann B., Unger M., Lee S.S., Stoffel-Studer I., van den Heuvel J., Pelet S., Koeppl H., Peter M., 2015. Developmental Cell, 35 (4) pp. 458-470.
A formin-nucleated actin aster concentrates cell wall hydrolases for cell fusion in fission yeast.
Dudin O., Bendezú F.O., Groux R., Laroche T., Seitz A., Martin S.G., 2015. Journal of Cell Biology, 208 (7) pp. 897-911.
Aspirin plus ticlopidine prevented experimental endocarditis due to Enterococcus faecalis and Streptococcus gallolyticus.
Veloso T.R., Oechslin F., Que Y.A., Moreillon P., Entenza J.M., Mancini S., 2015. Pathogens and Disease, 73 (8) pp. ftv060.
Candida albicans Inhibits Pseudomonas aeruginosa Virulence through Suppression of Pyochelin and Pyoverdine Biosynthesis.
Lopez-Medina E., Fan D., Coughlin L.A., Ho E.X., Lamont I.L., Reimmann C., Hooper L.V., Koh A.Y., 2015. Plos Pathogens, 11 (8) pp. e1005129. Peer-reviewed.
 
Casein Kinase 1γ Ensures Monopolar Growth Polarity under Incomplete DNA Replication Downstream of Cds1 and Calcineurin in Fission Yeast.
Koyano T., Konishi M., Martin S.G., Ohya Y., Hirata D., Toda T., Kume K., 2015. Molecular and Cellular Biology, 35 (9) pp. 1533-1542.
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., 2015. Environmental Microbiology, 17 (1) pp. 91-104.
Disassembly of a Medial Transenvelope Structure by Antibiotics during Intracellular Division.
Jacquier N., Frandi A., Viollier P.H., Greub G., 2015. Chemistry and Biology, 22 (9) pp. 1217-1227. Peer-reviewed.
Dynamic single cell measurements of kinase activity by synthetic kinase activity relocation sensors.
Durandau E., Aymoz D., Pelet S., 2015. BMC Biology, 13 p. 55. Peer-reviewed.
 
Editorial overview: Eukaryotic microbes: models and beyond.
Martin S.G., 2015. Current Opinion In Microbiology, 28 pp. v-vi.
Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus.
Ruffner B., Péchy-Tarr M., Höfte M., Bloemberg G., Grunder J., Keel C., Maurhofer M., 2015. Bmc Genomics, 16 (1) p. 609. Peer-reviewed.
Excision of staphylococcal cassette chromosome mec in methicillin-resistant Staphylococcus aureus assessed by quantitative PCR.
Stojanov M., Moreillon P., Sakwinska O., 2015. Bmc Research Notes, 8 p. 828. Peer-reviewed.
 
Fosfomycin plus β-Lactams as Synergistic Bactericidal Combinations for Experimental Endocarditis Due to Methicillin-Resistant and Glycopeptide-Intermediate Staphylococcus aureus.
Del Río A., García-de-la-Mària C., Entenza J.M., Gasch O., Armero Y., Soy D., Mestres C.A., Pericás J.M., Falces C., Ninot S. et al., 2015. Antimicrobial Agents and Chemotherapy, 60 (1) pp. 478-486.
Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.
Chronopoulou P.M., Sanni G.O., Silas-Olu D.I., van der Meer J.R., Timmis K.N., Brussaard C.P., McGenity T.J., 2015. Microbial Biotechnology, 8 (3) pp. 434-447.
Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand.
Moreno-Forero S.K., van der Meer J.R., 2015. ISME Journal, 9 (1) pp. 150-165.
Genomic Adaptations to the Loss of a Conserved Bacterial DNA Methyltransferase.
Gonzalez D., Collier J., 2015. mBio, 6 (4) pp. e00952. Peer-reviewed.
Gut symbionts from distinct hosts exhibit genotoxic activity via divergent colibactin biosynthetic pathways.
Engel P., Vizcaino M.I., Crawford J.M., 2015. Applied and Environmental Microbiology, 81 (4) pp. 1502-1512.
 
Impact of early valve surgery on outcome of Staphylococcus aureus prosthetic valve infective endocarditis: analysis in the International Collaboration of Endocarditis-Prospective Cohort Study.
Chirouze C., Alla F., Fowler V.G., Sexton D.J., Corey G.R., Chu V.H., Wang A., Erpelding M.L., Durante-Mangoni E., Fernández-Hidalgo N. et al., 2015. Clinical Infectious Diseases, 60 (5) pp. 741-749.
 
In vivo effect of flucloxacillin in experimental endocarditis caused by mecC-positive staphylococcus aureus showing temperature-dependent susceptibility in vitro.
Mancini S., Laurent F., Veloso T.R., Giddey M., Vouillamoz J., Vandenesch F., Moreillon P., Entenza J.M., 2015. Antimicrobial Agents and Chemotherapy, 59 (4) pp. 2435-2438.
Migration and horizontal gene transfer divide microbial genomes into multiple niches.
Niehus R., Mitri S., Fletcher A.G., Foster K.R., 2015. Nature Communications, 6 p. 8924. Peer-reviewed.
 
Parallel feedback loops control the basal activity of the HOG MAPK signaling cascade.
Sharifian H., Lampert F., Stojanovski K., Regot S., Vaga S., Buser R., Lee S.S., Koeppl H., Posas F., Pelet S. et al., 2015. Integrative Biology, 7 (4) pp. 412-422.
PKA antagonizes CLASP-dependent microtubule stabilization to re-localize Pom1 and buffer cell size upon glucose limitation.
Kelkar M., Martin S.G., 2015. Nature Communications, 6 p. 8445.
Pom1 gradient buffering through intermolecular auto-phosphorylation.
Hersch M., Hachet O., Dalessi S., Ullal P., Bhatia P., Bergmann S., Martin S.G., 2015. Molecular Systems Biology, 11 (7) p. 818. Peer-reviewed.
Prediction of multiple infections after severe burn trauma: a prospective cohort study.
Yan S., Tsurumi A., Que Y.A., Ryan C.M., Bandyopadhaya A., Morgan A.A., Flaherty P.J., Tompkins R.G., Rahme L.G., 2015. Annals of Surgery, 261 (4) pp. 781-792. Peer-reviewed.
Prophylaxis of experimental endocarditis with antiplatelet and antithrombin agents : a role for long-term prevention of infective endocarditis in humans?
Veloso T.R., Que Y.A., Chaouch A., Giddey M., Vouillamoz J., Rousson V., Moreillon P., Entenza J.M., 2015. Journal of Infectious Diseases, 211 (1) pp. 72-79. Peer-reviewed.
Quality and safety requirements for sustainable phage therapy products.
Pirnay J.P., Blasdel B.G., Bretaudeau L., Buckling A., Chanishvili N., Clark J.R., Corte-Real S., Debarbieux L., Dublanchet A., De Vos D. et al., 2015. Pharmaceutical Research, 32 (7) pp. 2173-2179.
Reply to Eisen and McBryde.
Veloso T.R., Que Y.A., Moreillon P., Entenza J.M., 2015. Journal of Infectious Diseases, 212 (4) pp. 674-675. Peer-reviewed.
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.
Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., 2015. Frontiers in Microbiology, 6 (101) p. 101. Peer-reviewed.
 
Sphingomonas wittichii RW1 gene reporters interrogating the dibenzofuran metabolic network highlight conditions for early successful development in contaminated microcosms.
Coronado E., Valtat A., van der Meer J.R., 2015. Environmental Microbiology Reports, 7 (3) pp. 480-488.
Spontaneous Cdc42 polarization independent of GDI-mediated extraction and actin-based trafficking.
Bendezú F.O., Vincenzetti V., Vavylonis D., Wyss R., Vogel H., Martin S.G., 2015. PLoS Biology, 13 (4) pp. e1002097. Peer-reviewed.
Spontaneous cell polarization: Feedback control of Cdc42 GTPase breaks cellular symmetry.
Martin S.G., 2015. Bioessays : News and Reviews In Molecular, Cellular and Developmental Biology, 37 (11) pp. 1193-1201. Peer-reviewed.
 
Staphylococcus aureus (Including Staphylococcal toxic shock)
Que Y.A., Moreillon P., 2015. pp. 2237-2271 dans Bennett J.E., Dolin R., Blaser M.J. (eds.) Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases chap. 195, Saunders.
The Bacterium Frischella perrara Causes Scab Formation in the Gut of its Honeybee Host.
Engel P., Bartlett K.D., Moran N.A., 2015. Mbio, 6 (3) pp. e00193-e00115. Peer-reviewed.
The Pseudomonas aeruginosa antimetabolite L -2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor.
Rojas Murcia N., Lee X., Waridel P., Maspoli A., Imker H.J., Chai T., Walsh C.T., Reimmann C., 2015. Frontiers in Microbiology, 6 p. 170. Peer-reviewed.
 
Vaccination against Staphylococcus aureus experimental endocarditis using recombinant Lactococcus lactis expressing ClfA or FnbpA.
Veloso T.R., Mancini S., Giddey M., Vouillamoz J., Que Y.A., Moreillon P., Entenza J.M., 2015. Vaccine, 33 (30) pp. 3512-3517. Peer-reviewed.
 
A novel cyanide-inducible gene cluster helps protect Pseudomonas aeruginosa from cyanide
Frangipani E., Perez-Martinez I., Williams H.D., Cherbuin G., Haas D., 2014. Environmental Microbiology Reports, 6 (1) pp. 28-34.
 
A rapid and effective vignetting correction for quantitative microscopy
Lee S.S., Pelet S., Peter M., Dechant R., 2014. RSC Advances, 4 (95) pp. 52727-52733.
A WXW Motif Is Required for the Anticancer Activity of the TAT-RasGAP317-326 Peptide.
Barras D., Chevalier N., Zoete V., Dempsey R., Lapouge K., Olayioye M.A., Michielin O., Widmann C., 2014. Journal of Biological Chemistry, 289 (34) pp. 23701-23711.
An operon of three transcriptional regulators controls horizontal gene transfer of the integrative and conjugative element ICEclc in Pseudomonas knackmussii B13.
Pradervand N., Sulser S., Delavat F., Miyazaki R., Lamas I., van der Meer J.R., 2014. PLoS Genetics, 10 (6) pp. e1004441.
 
Assessment of the in vitro synergy of daptomycin plus linezolid against multidrug-resistant enterococci
Entenza J.M., Giddey M., Vouillamoz J., Moreillon P., Mancini S., 2014. Journal of Global Antimicrobial Resistance, 2 (4) pp. 306-308. Peer-reviewed.
Cell polarization in budding and fission yeasts.
Martin S.G., Arkowitz R.A., 2014. FEMS Microbiology Reviews, 38 (2) pp. 228-253.
 
Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells.
Truffer F., Buffi N., Merulla D., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Geiser M., 2014. Review of Scientific Instruments, 85 (1) p. 015120.
Distinct levels in Pom1 gradients limit Cdr2 activity and localization to time and position division.
Bhatia P., Hachet O., Hersch M., Rincon S.A., Berthelot-Grosjean M., Dalessi S., Basterra L., Bergmann S., Paoletti A., Martin S.G., 2014. Cell Cycle, 13 (4) pp. 538-552.
Domain shuffling in a sensor protein contributed to the evolution of insect pathogenicity in plant-beneficial Pseudomonas protegens.
Kupferschmied P., Péchy-Tarr M., Imperiali N., Maurhofer M., Keel C., 2014. PLoS Pathogens, 10 (2) pp. e1003964. Peer-reviewed.
Effects of (p)ppGpp on the progression of the cell cycle of Caulobacter crescentus.
Gonzalez D., Collier J., 2014. Journal of Bacteriology, 196 (14) pp. 2514-2525. Peer-reviewed.
Escherchia coli ribose binding protein based bioreporters revisited.
Reimer A., Yagur-Kroll S., Belkin S., Roy S., van der Meer J.R., 2014. Scientific Reports, 4 p. 5626.
 
First day of an oil spill on the open sea: early mass transfers of hydrocarbons to air and water.
Gros J., Nabi D., Würz B., Wick L.Y., Brussaard C.P., Huisman J., van der Meer J.R., Reddy C.M., Arey J.S., 2014. Environmental Science and Technology, 48 (16) pp. 9400-9411.
Full-genome sequence of the plant growth-promoting bacterium Pseudomonas protegens CHA0.
Jousset A., Schuldes J., Keel C., Maurhofer M., Daniel R., Scheu S., Thuermer A., 2014. Genome Announcements, 2 (2) pp. e00322-14.
Functional analysis of pyochelin-/enantiopyochelin-related genes from a pathogenicity island of Pseudomonas aeruginosa strain PA14.
Maspoli A., Wenner N., Mislin G.L., Reimmann C., 2014. Biometals, 27 (3) pp. 559-573.
Hidden diversity in honey bee gut symbionts detected by single-cell genomics.
Engel P., Stepanauskas R., Moran N.A., 2014. PLoS Genetics, 10 (9) pp. e1004596. Peer-reviewed.
 
Hierarchical management of carbon sources is regulated similarly by the CbrA/B systems in Pseudomonas aeruginosa and Pseudomonas putida.
Valentini M., García-Mauriño S.M., Pérez-Martínez I., Santero E., Canosa I., Lapouge K., 2014. Microbiology, 160 (Pt 10) pp. 2243-2252. Peer-reviewed.
 
High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization.
Holden S.J., Pengo T., Meibom K.L., Fernandez Fernandez C., Collier J., Manley S., 2014. Proceedings of the National Academy of Sciences of the United States of America, 111 (12) pp. 4566-4571. Peer-reviewed.
Identification of genes potentially involved in solute stress response in Sphingomonas wittichii RW1 by transposon mutant recovery.
Coronado E., Roggo C., van der Meer J.R., 2014. Frontiers in Microbiology, 5 p. 585. Peer-reviewed.
 
Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128.
Fida T.T., Breugelmans P., Lavigne R., van der Meer J.R., De Mot R., Vaysse P.J., Springael D., 2014. Applied and Environmental Microbiology, 80 (11) pp. 3350-3361.
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