Centre intégratif de génomique

Equipe principale | CIG Services communs | Groupe Benton | Groupe Fajas | Groupe Fankhauser | Groupe Franken | Groupe Gambetta | Groupe Gatfield | Groupe Larsch | Groupe Michalik | Groupe Reymond | Groupe Roignant | Groupe van Leeuwen | Groupe Vastenhouw | Groupe Vjestica | Plateforme de biostatistique | Plateforme Genomics Technologies Facility (GTF) | Plateforme Protein Analysis Facility (PAF)
Publications | Mémoires et thèses

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1744 publications

... | 2014 | 2013 | 2012 | ...
2014
Src is activated by the nuclear receptor peroxisome proliferator-activated receptor β/δ in ultraviolet radiation-induced skin cancer.
Montagner A., Delgado M.B., Tallichet-Blanc C., Chan J.S., Sng M.K., Mottaz H., Degueurce G., Lippi Y., Moret C., Baruchet M. et al., 2014. EMBO Molecular Medicine, 6 (1) pp. 80-98.
[URN][DOI][WoS][Pmid][serval:BIB_61D2EDA76529]
 
TBC1D7 mutations are associated with intellectual disability, macrocrania, patellar dislocation, and celiac disease.
Alfaiz A.A., Micale L., Mandriani B., Augello B., Pellico M.T., Chrast J., Xenarios I., Zelante L., Merla G., Reymond A., 2014. Human Mutation, 35 (4) pp. 447-451.
[DOI][WoS][Pmid][serval:BIB_4A2DD35BA4D5]
The effect of homozygous deletion of the BBOX1 and Fibin genes on carnitine level and acyl carnitine profile.
Rashidi-Nezhad A., Talebi S., Saebnouri H., Akrami S.M., Reymond A., 2014. BMC Medical Genetics, 15 p. 75.
[URN][DOI][WoS][Pmid][serval:BIB_4370352767FD]
The emerging role of Nrf2 in dermatotoxicology.
Tan N.S., Wahli W., 2014. EMBO Molecular Medicine, 6 (4) pp. 431-433.
[URN][DOI][WoS][Pmid][serval:BIB_6B7E6E5D3D6A]
 
The mind and the belly: a glance at how the nervous system directs metabolism.
Accili D., Ahrén B., Boitard C., Seino S., Thorens B., Cerasi E., 2014. Diabetes, Obesity and Metabolism, 16 Suppl 1 pp. 1-3.
[DOI][WoS][Pmid][serval:BIB_05D8A13D71BA]
The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience.
Griss J., Jones A.R., Sachsenberg T., Walzer M., Gatto L., Hartler J., Thallinger G.G., Salek R.M., Steinbeck C., Neuhauser N. et al., 2014. Molecular and Cellular Proteomics, 13 (10) pp. 2765-2775.
[URN][DOI][WoS][Pmid][serval:BIB_20AA0B90B470]
The role of SGLT1 and GLUT2 in intestinal glucose transport and sensing.
Röder P.V., Geillinger K.E., Zietek T.S., Thorens B., Koepsell H., Daniel H., 2014. PLoS One, 9 (2) pp. e89977.
[URN][DOI][WoS][Pmid][serval:BIB_7C899152E1B3]
Tissue specificity in DNA repair: lessons from trinucleotide repeat instability.
Dion V., 2014. Trends in Genetics, 30 (6) pp. 220-229.
[URN][DOI][WoS][Pmid][serval:BIB_558AE4B667F3]
Transcriptional response to cardiac injury in the zebrafish: systematic identification of genes with highly concordant activity across in vivo models.
Rodius S., Nazarov P.V., Nepomuceno-Chamorro I.A., Jeanty C., González-Rosa J.M., Ibberson M., da Costa R.M., Xenarios I., Mercader N., Azuaje F., 2014. BMC Genomics, 15 (1) p. 852.
[URN][DOI][WoS][Pmid][serval:BIB_093534C78CCD]
 
Tumor necrosis factor and transforming growth factor β regulate clock genes by controlling the expression of the cold inducible RNA-binding protein (CIRBP).
Lopez M., Meier D., Müller A., Franken P., Fujita J., Fontana A., 2014. Journal of Biological Chemistry, 289 (5) pp. 2736-2744.
[DOI][WoS][Pmid][serval:BIB_60CCE63D0F15]
 
Unique genome replication mechanism of the archaeal virus AFV1.
Pina M., Basta T., Quax T.E., Joubert A., Baconnais S., Cortez D., Lambert S., Le Cam E., Bell S.D., Forterre P. et al., 2014. Molecular Microbiology, 92 (6) pp. 1313-1325.
[DOI][WoS][Pmid][serval:BIB_56DF88352267]
2013
 
MLL2 mutation detection in 86 patients with Kabuki syndrome: a genotype-phenotype study.
Makrythanasis P., van Bon B.W., Steehouwer M., Rodríguez-Santiago B., Simpson M., Dias P., Anderlid B.M., Arts P., Bhat M., Augello B. et al., 2013/12. Clinical genetics, 84 (6) pp. 539-545. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F7CFC1017987]
 
A robust second-generation genome-wide test for fetal aneuploidy based on shotgun sequencing cell-free DNA in maternal blood : A robust second-generation genome-wide test for fetal aneuploidy
Guex N., Iseli C., Syngelaki A., Deluen C., Pescia G., Nicolaides K. H., Xenarios I., Conrad B., 2013/07. Prenatal Diagnosis, 33 (7) pp. 707-710.
[DOI][WoS][Pmid][serval:BIB_61C3E493220A]
A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains.
Simon M.M., Greenaway S., White J.K., Fuchs H., Gailus-Durner V., Wells S., Sorg T., Wong K., Bedu E., Cartwright E.J. et al., 2013. Genome Biology, 14 (7) pp. R82. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_90419D2019AD]
A KRAB/KAP1-miRNA Cascade Regulates Erythropoiesis Through Stage-Specific Control of Mitophagy
Barde I., Rauwel B., Marin-Florez R.M., Corsinotti A., Laurenti E., Verp S., Offner S., Marquis J., Kapopoulou A., Vanicek J. et al., 2013. Science (new York, N.y.), 340 (6130) pp. 350-353. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_46F2FB0DD990]
A Novel Pulse-Chase SILAC Strategy Measures Changes in Protein Decay and Synthesis Rates Induced by Perturbation of Proteostasis with an Hsp90 Inhibitor.
Fierro-Monti I., Racle J., Hernandez C., Waridel P., Hatzimanikatis V., Quadroni M., 2013. PLoS One, 8 (11) pp. e80423.
[URN][DOI][WoS][Pmid][serval:BIB_326DDB3DDF34]
 
A patient with narcolepsy with cataplexy and multiple sclerosis: two different diseases that may share pathophysiologic mechanisms?
Peraita-Adrados R., Lammers G.J., De Andrés C., Santamaría J., Vicario J.L., Tafti M., 2013. Sleep Medicine, 14 (7) pp. 695-696.
[DOI][WoS][Pmid][serval:BIB_C92CF1F16476]
 
A role for clock genes in sleep homeostasis.
Franken P., 2013. Current Opinion in Neurobiology, 23 (5) pp. 864-872.
[DOI][WoS][Pmid][serval:BIB_0E537B7CDA17]
Assessment of transcript reconstruction methods for RNA-seq.
Steijger T., Abril J.F., Engström P.G., Kokocinski F., RGASP Consortium, Abril J.F., Abril J.F., Akerman M., Alioto T., Ambrosini G. et al., 2013. Nature Methods, 10 (12) pp. 1177-1184.
[URN][DOI][WoS][Pmid][serval:BIB_63C268AABFEF]
 
Association of adiposity genetic variants with menarche timing in 92,105 women of European descent.
Fernández-Rhodes L., Demerath E.W., Cousminer D.L., Tao R., Dreyfus J.G., Esko T., Smith A.V., Gudnason V., Harris T.B., Launer L. et al., 2013. American Journal of Epidemiology, 178 (3) pp. 451-460. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_2678C7F17716]
Birth and expression evolution of mammalian microRNA genes.
Meunier J., Lemoine F., Soumillon M., Liechti A., Weier M., Guschanski K., Hu H., Khaitovich P., Kaessmann H., 2013. Genome Research, 23 (1) pp. 34-45.
[URN][DOI][WoS][Pmid][serval:BIB_3D691B986F21]
 
CD40 activation induces NREM sleep and modulates genes associated with sleep homeostasis.
Gast H., Müller A., Lopez M., Meier D., Huber R., Dechent F., Prinz M., Emmenegger Y., Franken P., Birchler T. et al., 2013. Brain, Behavior, and Immunity, 27 (1) pp. 133-144. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A6BA2F96ED98]
Cellular source and mechanisms of high transcriptome complexity in the Mammalian testis.
Soumillon M., Necsulea A., Weier M., Brawand D., Zhang X., Gu H., Barthès P., Kokkinaki M., Nef S., Gnirke A. et al., 2013. Cell Reports, 3 (6) pp. 2179-2190.
[URN][DOI][WoS][Pmid][serval:BIB_CE7101CCD7BB]
Circulating microRNAs as biomarkers for detection of autologous blood transfusion.
Leuenberger N., Schumacher Y.O., Pradervand S., Sander T., Saugy M., Pottgiesser T., 2013. Plos One, 8 (6) pp. e66309. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_67101E35A815]
 
Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.
Luca G., Haba-Rubio J., Dauvilliers Y., Lammers G.J., Overeem S., Donjacour C.E., Mayer G., Javidi S., Iranzo A., Santamaria J. et al., 2013. Journal of Sleep Research, 22 (5) pp. 482-495.
[DOI][WoS][Pmid][serval:BIB_6E69BB255E98]
Comprehensive Expression Analyses of Neural Cell-Type-Specific miRNAs Identify New Determinants of the Specification and Maintenance of Neuronal Phenotypes.
Jovicic A., Roshan R., Moisoi N., Pradervand S., Moser R., Pillai B., Luthi-Carter R., 2013. Journal of Neuroscience, 33 (12) pp. 5127-5137.
[URN][DOI][WoS][Pmid][serval:BIB_006570C9C297]
Conditional Involvement of CONSTITUTIVE PHOTOMORPHOGENIC1 in the Degradation of Phytochrome A.
Debrieux D., Trevisan M., Fankhauser C., 2013. Plant Physiology, 161 (4) pp. 2136-2145.
[URN][DOI][WoS][Pmid][serval:BIB_71784C2E9604]
Contributions of peroxisome proliferator-activated receptor β/δ to skin health and disease
Montagner A., Wahli W., 2013. Biomolecular Concepts, 4 (1) pp. 53-64.
[URN][DOI][Pmid][serval:BIB_93B467D38952]
 
Controlling complexity: the clinical relevance of mouse complex genetics.
Schughart K., Libert C., SYSGENET consortium, Kas M.J., Kas M.J., 2013. European Journal of Human Genetics, 21 (11) pp. 1191-1196.
[DOI][WoS][Pmid][serval:BIB_419668E1C8F5]
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
Kilpinen H., Waszak S.M., Gschwind A.R., Raghav S.K., Witwicki R.M., Orioli A., Migliavacca E., Wiederkehr M., Gutierrez-Arcelus M., Panousis N.I. et al., 2013. Science, 342 (6159) pp. 744-747.
[URN][DOI][WoS][Pmid][serval:BIB_3B38B04B8D47]
 
D6PK AGCVIII Kinases Are Required for Auxin Transport and Phototropic Hypocotyl Bending in Arabidopsis.
Willige B.C., Ahlers S., Zourelidou M., Barbosa I.C., Demarsy E., Trevisan M., Davis P.A., Roelfsema M.R., Hangarter R., Fankhauser C. et al., 2013. Plant Cell, 25 (5) pp. 1674-1688.
[DOI][WoS][Pmid][serval:BIB_8A95BD52938C]
Database resources for the tuberculosis community.
Lew J.M., Mao C., Shukla M., Warren A., Will R., Kuznetsov D., Xenarios I., Robertson B.D., Gordon S.V., Schnappinger D. et al., 2013. Tuberculosis, 93 (1) pp. 12-17. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4015A3FC0489]
Defining the site of light perception and initiation of phototropism in Arabidopsis.
Preuten T., Hohm T., Bergmann S., Fankhauser C., 2013. Current Biology, 23 (19) pp. 1934-1938.
[URN][DOI][WoS][Pmid][serval:BIB_12E34D66EC26]
Dynamic impacts of the inhibition of the molecular chaperone hsp90 on the T-cell proteome have implications for anti-cancer therapy.
Fierro-Monti I., Echeverria P., Racle J., Hernandez C., Picard D., Quadroni M., 2013. PLoS One, 8 (11) pp. e80425.
[URN][DOI][WoS][Pmid][serval:BIB_C705CAC1FD48]
 
Dynamical modeling and analysis of large cellular regulatory networks.
Bérenguier D., Chaouiya C., Monteiro P.T., Naldi A., Remy E., Thieffry D., Tichit L., 2013. Chaos, 23 (2) p. 025114.
[DOI][WoS][Pmid][serval:BIB_1548FBB8A842]
Electroencephalogram paroxysmal theta characterizes cataplexy in mice and children.
Vassalli A., Dellepiane J.M., Emmenegger Y., Jimenez S., Vandi S., Plazzi G., Franken P., Tafti M., 2013. Brain, 136 (Pt 5) pp. 1592-1608.
[URN][DOI][WoS][Pmid][serval:BIB_8CF78957B78A]
 
Elements of olfactory reception in adult Drosophila melanogaster.
Martin F., Boto T., Gomez-Diaz C., Alcorta E., 2013. Anatomical Record, 296 (9) pp. 1477-1488.
[DOI][WoS][Pmid][serval:BIB_6A2A0EE10329]
 
Estrogen receptor-mediated signalling in female mice is locally activated in response to wounding.
Emmerson E., Rando G., Meda C., Campbell L., Maggi A., Hardman M.J., 2013. Molecular and Cellular Endocrinology, 375 (1-2) pp. 149-156.
[DOI][WoS][Pmid][serval:BIB_BAE0242C78BA]
Evolution of the correlation between expression divergence and protein divergence in mammals.
Warnefors M., Kaessmann H., 2013. Genome Biology and Evolution, 5 (7) pp. 1324-1335.
[URN][DOI][WoS][Pmid][serval:BIB_4D04AF988D94]
Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs.
Zhang X., Krause K.H., Xenarios I., Soldati T., Boeckmann B., 2013. PLoS One, 8 (3) pp. e58126.
[URN][DOI][WoS][Pmid][serval:BIB_D88C72718728]
 
FAM111A Mutations Result in Hypoparathyroidism and Impaired Skeletal Development.
Unger S., Górna M.W., Le Béchec A., Do Vale-Pereira S., Bedeschi M.F., Geiberger S., Grigelioniene G., Horemuzova E., Lalatta F., Lausch E. et al., 2013. American Journal of Human Genetics, 92 (6) pp. 990-995.
[DOI][WoS][Pmid][serval:BIB_CD1DA3031C71]
 
Fly larvae explore the world without a brain
Prieto-Godino L., 2013. Journal of Experimental Biology, 260 (5) pp. V-V.
[DOI][WoS][serval:BIB_0E43F24C8A59]
 
Genetic interaction between circadian and homeostatic regulation of sleep
Mongrain V., Franken P., 2013. pp. 147-161 dans Shaw P., Tafti M., Thorpy M.J. (eds.) The Genetic Basis of Sleep and Sleep Disorders chap. 15, Cambridge University Press.
[DOI][WoS][serval:BIB_031F6C4FF73C]
 
Genetics of recurrent hypersomnia
Billiard M., Peraita-Adrados R., Tafti M., 2013. pp. 272-277 dans Shaw P., Tafti M., Thorpy M.J. (eds.) The Genetic Basis of Sleep and Sleep Disorders chap. 27, Cambridge University Press.
[DOI][WoS][serval:BIB_CE1DEA7F7616]
 
Genetics of sleep and EEG
Curie T., Tafti M., 2013. pp. 139-146 dans Shaw P., Tafti M., Thorpy M.J. (eds.) The Genetic Basis of Sleep and Sleep Disorders chap. 14, Cambridge University Press.
[DOI][WoS][serval:BIB_16E192233560]
 
Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.
Cousminer D.L., Berry D.J., Timpson N.J., Ang W., Thiering E., Byrne E.M., Taal H.R., Huikari V., Bradfield J.P., Kerkhof M. et al., 2013. Human Molecular Genetics, 22 (13) pp. 2735-2747.
[DOI][WoS][Pmid][serval:BIB_A2097124302A]
 
Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1.
Roggo C., Coronado E., Moreno-Forero S.K., Harshman K., Weber J., van der Meer J.R., 2013. Environmental Microbiology, 15 (10) pp. 2681-2695.
[DOI][WoS][Pmid][serval:BIB_98FA785B3C61]
Global transcriptome sequencing identifies chlamydospore specific markers in Candida albicans and Candida dubliniensis.
Palige K., Linde J., Martin R., Böttcher B., Citiulo F., Sullivan D.J., Weber J., Staib C., Rupp S., Hube B. et al., 2013. PLoS One, 8 (4) pp. e61940.
[URN][DOI][WoS][Pmid][serval:BIB_1253E5DD657F]
 
Glucose-dependent insulinotropic polypeptide receptor deficiency leads to modifications of trabecular bone volume and quality in mice.
Gaudin-Audrain C., Irwin N., Mansur S., Flatt P.R., Thorens B., Baslé M., Chappard D., Mabilleau G., 2013. Bone, 53 (1) pp. 221-230.
[DOI][WoS][Pmid][serval:BIB_001D7D0300C2]
HCF-1 is cleaved in the active site of O-GlcNAc transferase.
Lazarus M.B., Jiang J., Kapuria V., Bhuiyan T., Janetzko J., Zandberg W.F., Vocadlo D.J., Herr W., Walker S., 2013. Science, 342 (6163) pp. 1235-1239. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0C03172DF49E]
HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy.
Michaud J., Praz V., James Faresse N., Jnbaptiste C.K., Tyagi S., Schütz F., Herr W., 2013. Genome Research, 23 (6) pp. 907-916.
[URN][DOI][WoS][Pmid][serval:BIB_971548BE9993]
Hepatic glucose sensing is required to preserve β cell glucose competence.
Seyer P., Vallois D., Poitry-Yamate C., Schütz F., Metref S., Tarussio D., Maechler P., Staels B., Lanz B., Grueter R. et al., 2013. Journal of Clinical Investigation, 123 (4) pp. 1662-1676.
[URN][DOI][WoS][Pmid][serval:BIB_FD22C2D96632]
 
Homeostatic and circadian contribution to EEG and molecular state variables of sleep regulation.
Curie T., Mongrain V., Dorsaz S., Mang G.M., Emmenegger Y., Franken P., 2013. Sleep, 36 (3) pp. 311-323.
[DOI][WoS][Pmid][serval:BIB_8647CFF62137]
Hominoid fission of chromosome 14/15 and the role of segmental duplications.
Giannuzzi G., Pazienza M., Huddleston J., Antonacci F., Malig M., Vives L., Eichler E.E., Ventura M., 2013. Genome Research, 23 (11) pp. 1763-1773.
[URN][DOI][WoS][Pmid][serval:BIB_4C035F54B0D4]
 
Human epidermal stem cell function is regulated by circadian oscillations.
Janich P., Toufighi K., Solanas G., Luis N.M., Minkwitz S., Serrano L., Lehner B., Benitah S.A., 2013. Cell Stem Cell, 13 (6) pp. 745-753. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A53508AD334C]
 
Identification of Multiple Mechanisms of Resistance to Vemurafenib in a Patient with BRAFV600E-Mutated Cutaneous Melanoma Successfully Rechallenged after Progression.
Romano E., Pradervand S., Paillusson A., Weber J., Harshman K., Muehlethaler K., Speiser D., Peters S., Rimoldi D., Michielin O., 2013. Clinical Cancer Research, 19 (20) pp. 5749-5757.
[DOI][WoS][Pmid][serval:BIB_F614E54C2488]
 
Identifying knots in proteins.
Millett K.C., Rawdon E.J., Stasiak A., Sułkowska J.I., 2013. Biochemical Society Transactions, 41 (2) pp. 533-537.
[DOI][WoS][Pmid][serval:BIB_9E0FB0902957]
 
Incretins: what is known, new and controversial in 2013?
Burcelin R., Thorens B., European Club for the study of GLP-1 (EuCSGLP-1), 2013. Diabetes and Metabolism, 39 (2) pp. 89-93.
[DOI][WoS][Pmid][serval:BIB_332AD78EFBA4]
Ionotropic receptors (IRs): chemosensory ionotropic glutamate receptors in Drosophila and beyond.
Rytz R., Croset V., Benton R., 2013. Insect Biochemistry and Molecular Biology, 43 (9) pp. 888-897. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FE442C4FF36A]
 
Knot localization in proteins.
Rawdon E.J., Millett K.C., Sulkowska J.I., Stasiak A., 2013. Biochemical Society Transactions, 41 (2) pp. 538-541.
[DOI][WoS][Pmid][serval:BIB_E6F5CE3DF11E]
Ligands for pheromone-sensing neurons are not conformationally activated odorant binding proteins.
Gomez-Diaz C., Reina J.H., Cambillau C., Benton R., 2013. PLoS Biology, 11 (4) pp. e1001546.
[URN][DOI][WoS][Pmid][serval:BIB_F7C6F265B863]
Major Histocompatibility Class II Pathway Is Not Required for the Development of Nonalcoholic Fatty Liver Disease in Mice.
Willemin G., Roger C., Bauduret A., Minehira K., 2013. International Journal of Endocrinology, 2013 p. 972962.
[URN][DOI][WoS][Pmid][serval:BIB_89E74231738A]
 
Malaria haplotype frequency estimation.
Wigger L., Vogt J.E., Roth V., 2013. Statistics in Medicine, 32 (21) pp. 3737-3751.
[DOI][WoS][Pmid][serval:BIB_A0FED704BD9B]
 
Meeting report of the European mouse complex genetics network SYSGENET.
Delprato A., Aransay A.M., Kollmus H., Schughart K., Falcon-Perez J.M., SYSGENET consortium, 2013. Mammalian Genome, 24 (5-6) pp. 190-197.
[DOI][WoS][Pmid][serval:BIB_D9F8B41A2272]
 
Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin-proteasome system in pancreatic beta cell dysfunction.
Bugliani M., Liechti R., Cheon H., Suleiman M., Marselli L., Kirkpatrick C., Filipponi F., Boggi U., Xenarios I., Syed F. et al., 2013. Molecular and Cellular Endocrinology, 367 (1-2) pp. 1-10. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5D27899672C1]
Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes.
Dorier J., Stasiak A., 2013. Nucleic Acids Research, 41 (14) pp. 6808-6815.
[URN][DOI][WoS][Pmid][serval:BIB_F265DFDD4281]
 
Neuroecology: a fly's bug detector.
Prieto-Godino L.L., Benton R., 2013. Current Biology, 23 (1) pp. R20-R22.
[DOI][WoS][Pmid][serval:BIB_B47EB920563F]
 
Neuroligin-1 links neuronal activity to sleep-wake regulation.
El Helou J., Bélanger-Nelson E., Freyburger M., Dorsaz S., Curie T., La Spada F., Gaudreault P.O., Beaumont É., Pouliot P., Lesage F. et al., 2013. Proceedings of the National Academy of Sciences of the United States of America, 110 (24) pp. 9974-9979.
[DOI][WoS][Pmid][serval:BIB_FFF6E476695A]
New and continuing developments at PROSITE.
Sigrist C.J., de Castro E., Cerutti L., Cuche B.A., Hulo N., Bridge A., Bougueleret L., Xenarios I., 2013. Nucleic Acids Research, 41 (D1) pp. D344-D347.
[URN][DOI][WoS][Pmid][serval:BIB_A6260C8C6904]
 
On circuit functionality in boolean networks.
Comet J.P., Noual M., Richard A., Aracena J., Calzone L., Demongeot J., Kaufman M., Naldi A., Snoussi el H, Thieffry D., 2013. Bulletin of Mathematical Biology, 75 (6) pp. 906-919.
[DOI][WoS][Pmid][serval:BIB_75F51380A25E]
 
Phosphorylation of Phytochrome B Inhibits Light-Induced Signaling via Accelerated Dark Reversion in Arabidopsis.
Medzihradszky M., Bindics J., Adám E., Viczián A., Klement E., Lorrain S., Gyula P., Mérai Z., Fankhauser C., Medzihradszky K.F. et al., 2013. Plant Cell, 25 (2) pp. 535-544.
[DOI][WoS][Pmid][serval:BIB_3FAB7C6FEE21]
Phototropism: at the crossroads of light-signaling pathways.
Goyal A., Szarzynska B., Fankhauser C., 2013. Trends in Plant Science, 18 (7) pp. 393-401. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D190772F9835]
Phototropism: Translating light into directional growth.
Hohm T., Preuten T., Fankhauser C., 2013. American Journal of Botany, 100 (1) pp. 47-59. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BFBF5EAD16F0]
 
Planning sleep-related animal and translational research
Mang G.M., Franken P., 2013. pp. 139-150 dans Kushida C.A. (eds.) Encyclopedia of Sleep, Elsevier.
[DOI][serval:BIB_D29EC89B3126]
Plant species distributions along environmental gradients: do belowground interactions with fungi matter?
Pellissier L., Pinto-Figueroa E., Niculita-Hirzel Hélène, Moora M., Villard L., Goudet J., Guex N., Pagni M., Xenarios I., Sanders I. et al., 2013. Frontiers In Plant Science, 4 (500) p. 500. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A4BFB3D30FC4]
 
Pleiotropy in the melanocortin system: expression levels of this system are associated with melanogenesis and pigmentation in the tawny owl (Strix aluco).
Emaresi G., Ducrest A.L., Bize P., Richter H., Simon C., Roulin A., 2013. Molecular Ecology, 22 (19) pp. 4915-4930.
[DOI][WoS][Pmid][serval:BIB_CB67C539EBD8]
PPARβ Interprets a Chromatin Signature of Pluripotency to Promote Embryonic Differentiation at Gastrulation.
Rotman N., Guex N., Gouranton E., Wahli W., 2013. PLoS One, 8 (12) pp. e83300.
[URN][DOI][WoS][Pmid][serval:BIB_778DADB5238A]
 
PPARβ/δ governs Wnt signaling and bone turnover.
Scholtysek C., Katzenbeisser J., Fu H., Uderhardt S., Ipseiz N., Stoll C., Zaiss M.M., Stock M., Donhauser L., Böhm C. et al., 2013. Nature Medicine, 19 (5) pp. 608-613.
[DOI][WoS][Pmid][serval:BIB_77E3BA74B733]
Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells.
Peterson H., Abu Dawud R., Garg A., Wang Y., Vilo J., Xenarios I., Adjaye J., 2013. Frontiers in Physiology, 4 p. 303.
[URN][DOI][WoS][Pmid][serval:BIB_DA114C34C742]
Rare genomic structural variants in complex disease: lessons from the replication of associations with obesity.
Walters R.G., Coin L.J., Ruokonen A., de Smith A.J., El-Sayed Moustafa J.S., Jacquemont S., Elliott P., Esko T., Hartikainen A.L., Laitinen J. et al., 2013. Plos One, 8 (3) pp. e58048.
[URN][DOI][WoS][Pmid][serval:BIB_0257103FC0D5]
 
Real-time recording of circadian liver gene expression in freely moving mice reveals the phase-setting behavior of hepatocyte clocks.
Saini C., Liani A., Curie T., Gos P., Kreppel F., Emmenegger Y., Bonacina L., Wolf J.P., Poget Y.A., Franken P. et al., 2013. Genes and Development, 27 (13) pp. 1526-1536.
[DOI][WoS][Pmid][serval:BIB_418DF0DD948C]
Resistance to diet-induced obesity and associated metabolic perturbations in haploinsufficient monocarboxylate transporter 1 mice
Lengacher S., Nehiri-Sitayeb T., Steiner N., Carneiro L., Favrod C., Preitner F., Thorens B., Stehle J.C., Dix L., Pralong F. et al., 2013. PLoS One, 8 (12) pp. e82505.
[URN][DOI][WoS][Pmid][serval:BIB_7C2648899BDB]
 
Role of the circadian clock gene Per2 in adaptation to cold temperature.
Chappuis S., Ripperger J.A., Schnell A., Rando G., Jud C., Wahli W., Albrecht U., 2013. Molecular Metabolism, 2 (3) pp. 184-193.
[DOI][WoS][Pmid][serval:BIB_860E27AEE288]
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
Chaouiya C., Bérenguier D., Keating S.M., Naldi A., van Iersel M.P., Rodriguez N., Dräger A., Büchel F., Cokelaer T., Kowal B. et al., 2013. BMC Systems Biology, 7 p. 135.
[URN][DOI][WoS][Pmid][serval:BIB_9B75E0356BD8]
Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots.
Weber C., Carlen M., Dietler G., Rawdon E.J., Stasiak A., 2013. Scientific Reports, 3 p. 1091.
[URN][DOI][WoS][Pmid][serval:BIB_EF01E9CB67B3]
Shifting the paradigm of islet inflammation-good guy or bad guy?
Ahrén B., Accili D., Boitard C., Cerasi E., Thorens B., Seino S., 2013. Diabetes, Obesity and Metabolism, 15 Suppl 3 pp. 4-9. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4DCB052B4B34]
 
SOCS3 Transactivation by PPARγ Prevents IL-17-Driven Cancer Growth.
Berger H., Végran F., Chikh M., Gilardi F., Ladoire S., Bugaut H., Mignot G., Chalmin F., Bruchard M., Derangère V. et al., 2013. Cancer Research, 73 (12) pp. 3578-3590. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8768846D2B6D]
 
Sodium/hydrogen exchanger NHA2 is critical for insulin secretion in β-cells.
Deisl C., Simonin A., Anderegg M., Albano G., Kovacs G., Ackermann D., Moch H., Dolci W., Thorens B., A Hediger M. et al., 2013. Proceedings of the National Academy of Sciences of the United States of America, 110 (24) pp. 10004-10009. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_D523B7B158A1]
Structural variation-associated expression changes are paralleled by chromatin architecture modifications.
Gheldof N., Witwicki R.M., Migliavacca E., Leleu M., Didelot G., Harewood L., Rougemont J., Reymond A., 2013. PLoS One, 8 (11) pp. e79973.
[URN][DOI][WoS][Pmid][serval:BIB_71521CB25C1A]
 
Studying Wound Repair in the Mouse.
Tan N.S., Wahli W., 2013. Current Protocols In Mouse Biology, 3 (3) pp. 171-185. Peer-reviewed.
[DOI][Pmid][serval:BIB_E2396A145002]
 
Tau hyperphosphorylation and increased BACE1 and RAGE levels in the cortex of PPARβ/δ-null mice.
Barroso E., del Valle J., Porquet D., Vieira Santos A.M., Salvadó L., Rodríguez-Rodríguez R., Gutiérrez P., Anglada-Huguet M., Alberch J., Camins A. et al., 2013. Biochimica et Biophysica Acta. Molecular Basis of Disease, 1832 (8) pp. 1241-1248. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_497583315802]
 
The joy of sex pheromones.
Gomez-Diaz C., Benton R., 2013. EMBO Reports, 14 (10) pp. 874-883.
[DOI][WoS][Pmid][serval:BIB_11F0DA549610]
The molecular basis of social behavior: models, methods and advances.
Leboeuf A.C., Benton R., Keller L., 2013. Current Opinion in Neurobiology, 23 (1) pp. 3-10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_706DEB9C42FE]
The Peroxisomal Enzyme L-PBE Is Required to Prevent the Dietary Toxicity of Medium-Chain Fatty Acids.
Ding J., Loizides-Mangold U., Rando G., Zoete V., Michielin O., Reddy J.K., Wahli W., Riezman H., Thorens B., 2013. Cell Reports, 5 (1) pp. 248-258.
[URN][DOI][WoS][Pmid][serval:BIB_32435212F771]
 
The required beta cell research for improving treatment of type 2 diabetes.
Thorens B., 2013. Journal of Internal Medicine, 274 (3) pp. 203-214.
[DOI][WoS][Pmid][serval:BIB_4A66DC9B3E91]
The SLC2 (GLUT) family of membrane transporters.
Mueckler M., Thorens B., 2013. Molecular Aspects of Medicine, 34 (2-3) pp. 121-138. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A2607C275E16]
 
Topological aspects of DNA function and protein folding.
Stasiak A., Bates A.D., Buck D.E., Harris S.A., Sumners de W, 2013. Biochemical Society Transactions, 41 (2) pp. 491-493.
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Urate-induced acute renal failure and chronic inflammation in liver-specific Glut9 knockout mice.
Preitner F., Laverriere-Loss A., Metref S., Da Costa A., Moret C., Rotman S., Bazin D., Daudon M., Sandt C., Dessombz A. et al., 2013. American Journal of Physiology. Renal Physiology, 305 (5) pp. F786-F795.
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Verification at the protein level of the PIF4-mediated external coincidence model for the temperature-adaptive photoperiodic control of plant growth in Arabidopsis thaliana.
Yamashino T., Nomoto Y., Lorrain S., Miyachi M., Ito S., Nakamichi N., Fankhauser C., Mizuno T., 2013. Plant Signaling and Behavior, 8 (3) pp. e23390.
[URN][DOI][Pmid][serval:BIB_8EABEC2C783F]
 
Visualizing Olfactory Receptor Expression and Localization in Drosophila
Saina Michael, Benton Richard, 2013. pp. 211-228 dans Olfactory Receptors, Humana Press.
[DOI][Pmid][serval:BIB_D6CAAB8D7A05]
Weaker ligands can dominate an odor blend due to syntopic interactions.
Münch D., Schmeichel B., Silbering A.F., Galizia C.G., 2013. Chemical Senses, 38 (4) pp. 293-304.
[URN][DOI][WoS][Pmid][serval:BIB_EBF59C4B0332]
2012
An integrated map of genetic variation from 1,092 human genomes.
1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA, 2012/11. Nature.
[URN][DOI][Pmid][serval:BIB_5BC1B19DB11D]
 
2q34-qter duplication and 4q34.2-qter deletion in a patient with developmental delay.
Rashidi-Nezhad A., Parvaneh N., Farzanfar F., Azimi C., Harewood L., Akrami S.M., Reymond A., 2012. European Journal of Medical Genetics, 55 (3) pp. 203-210.
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A 600 kb deletion syndrome at 16p11.2 leads to energy imbalance and neuropsychiatric disorders.
Zufferey F., Sherr E.H., Beckmann N.D., Hanson E., Maillard A.M., Hippolyte L., Macé A., Ferrari C., Kutalik Z., Andrieux J. et al., 2012. Journal of Medical Genetics, 49 (10) pp. 660-668. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_26004E3F396F]
A fish-specific transposable element shapes the repertoire of p53 target genes in zebrafish.
Micale L., Loviglio M.N., Manzoni M., Fusco C., Augello B., Migliavacca E., Cotugno G., Monti E., Borsani G., Reymond A. et al., 2012. PLoS One, 7 (10) pp. e46642.
[URN][DOI][WoS][Pmid][serval:BIB_74278C65208B]
A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver.
Canella D., Bernasconi D., Gilardi F., LeMartelot G., Migliavacca E., Praz V., Cousin P., Delorenzi M., Hernandez N., CycliX Consortium, 2012. Genome Research, 22 (4) pp. 666-680. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AFFF7604F2F3]
 
Age-related changes in sleep in inbred mice are genotype dependent.
Hasan S., Dauvilliers Y., Mongrain V., Franken P., Tafti M., 2012. Neurobiology of Aging, 33 (1) pp. 195.e13-195.e26.
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Alu expression in human cell lines and their retrotranspositional potential.
Oler A.J., Traina-Dorge S., Derbes R.S., Canella D., Cairns B.R., Roy-Engel A.M., 2012. Mobile DNA, 3 (1) p. 11.
[URN][DOI][WoS][Pmid][serval:BIB_6EB3C4A856F3]
 
An integrated encyclopedia of DNA elements in the human genome.
ENCODE Project Consortium, Dunham I., Dunham I., Kundaje A., Aldred S.F., Collins P.J., Davis C.A., Doyle F., Epstein C.B., Frietze S. et al., 2012. Nature, 489 (7414) pp. 57-74.
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Aspergillus species recombinant antigens for serodiagnosis of farmer's lung disease.
Millon L., Roussel S., Rognon B., Quadroni M., Salamin K., Reboux G., Barrera C., Fellrath J.M., Aubert J.D., Dalphin J.C. et al., 2012. Journal of Allergy and Clinical Immunology, 130 (3) pp. 803-805.e6.
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Atomic Force Microscopy Stiffness Tomography on Living Arabidopsis thaliana Cells Reveals the Mechanical Properties of Surface and Deep Cell-Wall Layers during Growth.
Radotić K., Roduit C., Simonović J., Hornitschek P., Fankhauser C., Mutavd?ić D. , Steinbach G., Dietler G., Kasas S., 2012. Biophysical Journal, 103 (3) pp. 386-394.
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Biocurators and biocuration: surveying the 21st century challenges.
Burge S., Attwood T.K., Bateman A., Berardini T.Z., Cherry M., O'Donovan C., Xenarios L., Gaudet P., 2012. Database, 2012 pp. bar059.
[URN][DOI][WoS][Pmid][serval:BIB_1758FC93270F]
Blood pressure increases with sleep disordered breathing severity in the general population: the HypnoLaus study
Haba-Rubio J., Andries D., Tobback N., Vaucher J., Marques-Vidal P., Vollenweider P., Waeber G., Tafti M., Heinzer RC., 2012. pp. A316 dans Sleep 2012, 26th Annual Meeting of the Associated Professional Sleep Society, Sleep.
[URN][WoS][serval:BIB_3A2481927374]
 
Calcium imaging of odor-evoked responses in the Drosophila antennal lobe.
Silbering A.F., Bell R., Galizia C.G., Benton R., 2012. Journal of Visualized Experiments 61 p. 2976.
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Cell autonomous lipin 1 function is essential for development and maintenance of white and brown adipose tissue.
Nadra K., Médard J.J., Mul J.D., Han G.S., Grès S., Pende M., Metzger D., Chambon P., Cuppen E., Saulnier-Blache J.S. et al., 2012. Molecular and Cellular Biology, 32 (23) pp. 4794-4810. Peer-reviewed.
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Circadian clock genes and the regulation of sleep
Curie T., Franken P., 2012. pp. 1-12 dans Shiromani P.J., Horvath T., Redline S., Van Cauter E. (eds.) Sleep loss and obesity: intersecting epidemics chap. 1, Springer.
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.
Howald C., Tanzer A., Chrast J., Kokocinski F., Derrien T., Walters N., Gonzalez J.M., Frankish A., Aken B.L., Hourlier T. et al., 2012. Genome Research, 22 (9) pp. 1698-1710.
[URN][DOI][WoS][Pmid][serval:BIB_E1581D2AC4AD]
 
Conservation of complex knotting and slipknotting patterns in proteins.
Sulkowska J.I., Rawdon E.J., Millett K.C., Onuchic J.N., Stasiak A., 2012. Proceedings of the National Academy of Sciences of the United States of America, 109 (26) pp. E1715-E1723.
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Context-dependent dual role of SKI8 homologs in mRNA synthesis and turnover.
Dorcey E., Rodriguez-Villalon A., Salinas P., Santuari L., Pradervand S., Harshman K., Hardtke C.S., 2012. PLoS Genetics, 8 (4) pp. e1002652.
[URN][DOI][WoS][Pmid][serval:BIB_F39277485DBF]
Delta-9-Tetrahydrocannabinol (THC) Protects Partly against Demyelination by Modulating the Inflammatory Response: An In Vitro Study in Aggregating Brain Cell Cultures
Defaux A., Schiffrin M., Vorlet-Fawer L., Spiehlmann A., Giroud C., Monnet-Tschud F., 2012. Journal of Clinical Toxicology, 01 (S6) pp. -. Peer-reviewed.
[URN][DOI][serval:BIB_4F43EC36B767]
 
Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.
Gheldof N., Leleu M., Noordermeer D., Rougemont J., Reymond A., 2012. Methods in Molecular Biology, 786 pp. 211-225.
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Differential effects of sodium oxybate and baclofen on EEG, sleep, neurobehavioral performance, and memory.
Vienne J., Lecciso G., Constantinescu I., Schwartz S., Franken P., Heinzer R., Tafti M., 2012. Sleep, 35 (8) pp. 1071-1083.
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Dreaming without REM sleep.
Oudiette D., Dealberto M.J., Uguccioni G., Golmard J.L., Merino-Andreu M., Tafti M., Garma L., Schwartz S., Arnulf I., 2012. Consciousness and Cognition, 21 (3) pp. 1129-1140. Peer-reviewed.
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Eeny meeny miny moe, catch a transcript by the toe, or how to enumerate eukaryotic transcripts.
Strick T.R., Hernandez N., 2012. Genes and Development, 26 (15) pp. 1643-1647.
[URN][DOI][WoS][Pmid][serval:BIB_5025157D8B5D]
Effect of transnasal insufflation on sleep disordered breathing in acute stroke: a preliminary study.
Haba-Rubio J., Andries D., Rey V., Michel P., Tafti M., Heinzer R., 2012. Sleep and Breathing, 16 (3) pp. 759-764. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DACAD708C81E]
Effective stiffening of DNA due to nematic ordering causes DNA molecules packed in phage capsids to preferentially form torus knots.
Reith D., Cifra P., Stasiak A., Virnau P., 2012. Nucleic Acids Research, 40 (11) pp. 5129-5137.
[URN][DOI][WoS][Pmid][serval:BIB_4D5FAD702911]
 
Epineurial adipocytes are dispensable for Schwann cell myelination.
Nadra K., Médard J.J., Quignodon L., Verheijen M.H., Desvergne B., Chrast R., 2012. Journal of Neurochemistry, 123 (5) pp. 662-667.
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Evidence for a new post-translational modification in Staphylococcus aureus: Hydroxymethylation of asparagine and glutamine.
Waridel P., Ythier M., Gfeller A., Moreillon P., Quadroni M., 2012. Journal of Proteomics, 75 (6) pp. 1742-1751.
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Evidence for transcript networks composed of chimeric RNAs in human cells.
Djebali S., Lagarde J., Kapranov P., Lacroix V., Borel C., Mudge J.M., Howald C., Foissac S., Ucla C., Chrast J. et al., 2012. PLoS One, 7 (1) pp. e28213.
[URN][DOI][WoS][Pmid][serval:BIB_09687AEE4DF5]
 
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma.
Nikolaev S.I., Rimoldi D., Iseli C., Valsesia A., Robyr D., Gehrig C., Harshman K., Guipponi M., Bukach O., Zoete V. et al., 2012. Nature Genetics, 44 (2) pp. 133-139.
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Fanconi-Bickel syndrome and autosomal recessive proximal tubulopathy with hypercalciuria (ARPTH) are allelic variants caused by GLUT2 mutations.
Mannstadt M., Magen D., Segawa H., Stanley T., Sharma A., Sasaki S., Bergwitz C., Mounien L., Boepple P., Thorens B. et al., 2012. Journal of Clinical Endocrinology and Metabolism, 97 (10) pp. E1978-E1986.
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Fluorescence behavioral imaging (FBI) tracks identity in heterogeneous groups of Drosophila.
Ramdya P., Schaffter T., Floreano D., Benton R., 2012. PLoS One, 7 (11) pp. e48381.
[URN][DOI][WoS][Pmid][serval:BIB_3389A721EC95]
GENCODE: the reference human genome annotation for The ENCODE Project.
Harrow J., Frankish A., Gonzalez J.M., Tapanari E., Diekhans M., Kokocinski F., Aken B.L., Barrell D., Zadissa A., Searle S. et al., 2012. Genome Research, 22 (9) pp. 1760-1774.
[URN][DOI][WoS][Pmid][serval:BIB_60ACD7FC0F0C]
 
Genetic mechanisms underlying rhythmic EEG activity during sleep
Franken P., 2012. pp. 59-89 dans Frank M.G. (eds.) Sleep and brain activity chap. 4, Elsevier.
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Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.
Le Martelot G., Canella D., Symul L., Migliavacca E., Gilardi F., Liechti R., Martin O., Harshman K., Delorenzi M., Desvergne B. et al., 2012. PLoS Biology, 10 (11) pp. e1001442. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_ECE3D90701DA]
Genomic Study of RNA Polymerase II and III SNAP(c)-Bound Promoters Reveals a Gene Transcribed by Both Enzymes and a Broad Use of Common Activators.
James Faresse N., Canella D., Praz V., Michaud J., Romascano D., Hernandez N., 2012. PLoS Genetics, 8 (11) pp. e1003028.
[URN][DOI][WoS][Pmid][serval:BIB_B581994FAB4A]
GW501516-activated PPARβ/δ promotes liver fibrosis via p38-JNK MAPK-induced hepatic stellate cell proliferation.
Kostadinova R., Montagner A., Gouranton E., Fleury S., Guillou H., Dombrowicz D., Desreumaux P., Wahli W., 2012. Cell and Bioscience, 2 (1) p. 34.
[URN][DOI][WoS][Pmid][serval:BIB_A7045DD0F4F8]
HCF-1 self-association via an interdigitated Fn3 structure facilitates transcriptional regulatory complex formation.
Park J., Lammers F., Herr W., Song J.J., 2012. Proceedings of the National Academy of Sciences of the United States of America, 109 (43) pp. 17430-17435.
[URN][DOI][WoS][Pmid][serval:BIB_4B814222B1E9]
 
HDLs protect pancreatic β-cells against ER stress by restoring protein folding and trafficking.
Pétremand J., Puyal J., Chatton J.Y., Duprez J., Allagnat F., Frias M., James R.W., Waeber G., Jonas J.C., Widmann C., 2012. Diabetes, 61 (5) pp. 1100-1111.
[URN][DOI][WoS][Pmid][serval:BIB_A0510DB24A81]
 
Human disease: Strength to strength for mouse models.
Schughart K., Libert C., Kas M.J., 2012. Nature, 492 (7427) p. 41.
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Identification and functional characterization of Rca1, a transcription factor involved in both antifungal susceptibility and host response in Candida albicans.
Vandeputte P., Pradervand S., Ischer F., Coste A.T., Ferrari S., Harshman K., Sanglard D., 2012. Eukaryotic Cell, 11 (7) pp. 916-931.
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Identification of infectious agents in onychomycoses by PCR-terminal restriction fragment length polymorphism.
Verrier J., Pronina M., Peter C., Bontems O., Fratti M., Salamin K., Schürch S., Gindro K., Wolfender J.L., Harshman K. et al., 2012. Journal of Clinical Microbiology, 50 (3) pp. 553-561. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7A553E80BAEA]
 
Impact of salt on cardiac differential gene expression and coronary lesion in normotensive mineralocorticoid-treated mice.
Wang Q., Domenighetti A.A., Schäfer S.C., Weber J., Simon A., Maillard M.P., Pedrazzini T., Chen J., Lehr H.A., Burnier M., 2012. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology, 302 (9) pp. R1025-R1033.
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Implicit methods for qualitative modeling of gene regulatory networks.
Garg A., Mohanram K., De Micheli G., Xenarios I., 2012. Methods in Molecular Biology, 786 pp. 397-443.
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Inflammasome activators induce interleukin-1α secretion via distinct pathways with differential requirement for the protease function of caspase-1.
Gross O., Yazdi A.S., Thomas C.J., Masin M., Heinz L.X., Guarda G., Quadroni M., Drexler S.K., Tschopp J., 2012. Immunity, 36 (3) pp. 388-400.
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KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant.
Golzio C., Willer J., Talkowski M.E., Oh E.C., Taniguchi Y., Jacquemont S., Reymond A., Sun M., Sawa A., Gusella J.F. et al., 2012. Nature, 485 (7398) pp. 363-367.
[URN][DOI][WoS][Pmid][serval:BIB_FE45367483B8]
Key electrophysiological, molecular, and metabolic signatures of sleep and wakefulness revealed in primary cortical cultures.
Hinard V., Mikhail C., Pradervand S., Curie T., Houtkooper R.H., Auwerx J., Franken P., Tafti M., 2012. Journal of Neuroscience, 32 (36) pp. 12506-12517.
[URN][DOI][WoS][Pmid][serval:BIB_A8B4286A4F00]
 
Kleine-Levin syndrome: Functional imaging correlates of hypersomnia and behavioral symptoms.
Haba-Rubio J., Prior J.O., Guedj E., Tafti M., Heinzer R., Rossetti A.O., 2012. Neurology, 79 (18) pp. 1927-1929.
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Lack of Smad3 signaling leads to impaired skeletal muscle regeneration.
Ge X., Vajjala A., McFarlane C., Wahli W., Sharma M., Kambadur R., 2012. American Journal of Physiology. Endocrinology and Metabolism, 303 (1) pp. E90-102.
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Landscape of transcription in human cells.
Djebali S., Davis C.A., Merkel A., Dobin A., Lassmann T., Mortazavi A., Tanzer A., Lagarde J., Lin W., Schlesinger F. et al., 2012. Nature, 489 (7414) pp. 101-108.
[URN][DOI][WoS][Pmid][serval:BIB_7207A3318E3D]
 
Linking epigenetics to lipid metabolism: focus on histone deacetylases.
Ferrari A., Fiorino E., Giudici M., Gilardi F., Galmozzi A., Mitro N., Cermenati G., Godio C., Caruso D., De Fabiani E. et al., 2012. Molecular Membrane Biology, 29 (7) pp. 257-266. Peer-reviewed.
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Measuring the diurnal pattern of leaf hyponasty and growth in Arabidopsis - a novel phenotyping approach using laser scanning
Dornbusch T., Lorrain S., Kuznetsov D., Fortier A., Liechti R., Xenarios I., Fankhauser C., 2012. Functional Plant Biology, 39 (10-11) pp. 860-869.
[URN][DOI][WoS][serval:BIB_C9AB28BD0B7C]
Mechanisms and evolutionary patterns of mammalian and avian dosage compensation.
Julien P., Brawand D., Soumillon M., Necsulea A., Liechti A., Schütz F., Daish T., Grützner F., Kaessmann H., 2012. PLoS Biology, 10 (5) pp. e1001328.
[URN][DOI][WoS][Pmid][serval:BIB_9F92052546C6]
Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.
Stolk L., Perry J.R., Chasman D.I., He C., Mangino M., Sulem P., Barbalic M., Broer L., Byrne E.M., Ernst F. et al., 2012. Nature Genetics, 44 (3) pp. 260-268.
[URN][DOI][WoS][Pmid][serval:BIB_F3EFAC2A846A]
MicroRNAs contribute to compensatory β cell expansion during pregnancy and obesity.
Jacovetti C., Abderrahmani A., Parnaud G., Jonas J.C., Peyot M.L., Cornu M., Laybutt R., Meugnier E., Rome S., Thorens B. et al., 2012. Journal of Clinical Investigation, 122 (10) pp. 3541-3551. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3EFD603B48DE]
 
Monozygotic twins affected with Kleine-Levin syndrome.
Peraita-Adrados R., Vicario J.L., Tafti M., García de León M., Billiard M., 2012. Sleep, 35 (5) pp. 595-596.
[DOI][WoS][Pmid][serval:BIB_6399B9F19DCA]
Morbillivirus glycoprotein expression induces ER stress, alters Ca2+ homeostasis and results in the release of vasostatin.
Brunner J.M., Plattet P., Doucey M.A., Rosso L., Curie T., Montagner A., Wittek R., Vandelvelde M., Zurbriggen A., Hirling H. et al., 2012. PLoS One, 7 (3) pp. e32803.
[URN][DOI][WoS][Pmid][serval:BIB_FA5A8E6C8DE0]
Multifocal epithelial tumors and field cancerization from loss of mesenchymal CSL signaling.
Hu B., Castillo E., Harewood L., Ostano P., Reymond A., Dummer R., Raffoul W., Hoetzenecker W., Hofbauer G.F., Dotto G.P., 2012. Cell, 149 (6) pp. 1207-1220. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C13437B7972C]
 
Nanopore detection of single molecule RNAP-DNA transcription complex.
Raillon C., Cousin P., Traversi F., Garcia-Cordero E., Hernandez N., Radenovic A., 2012. Nano Letters, 12 (3) pp. 1157-1164.
[DOI][WoS][Pmid][serval:BIB_846A9ACCE57B]
Next-generation sequencing of experimental mouse strains.
Yalcin B., Adams D.J., Flint J., Keane T.M., 2012. Mammalian Genome, 23 (9-10) pp. 490-498.
[URN][DOI][WoS][Pmid][serval:BIB_44BEB847113F]
Nuclear phytochrome a signaling promotes phototropism in Arabidopsis.
Kami C., Hersch M., Trevisan M., Genoud T., Hiltbrunner A., Bergmann S., Fankhauser C., 2012. Plant Cell, 24 (2) pp. 566-576.
[URN][DOI][WoS][Pmid][serval:BIB_9AA1E61E7943]
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.
Hornitschek P., Kohnen M.V., Lorrain S., Rougemont J., Ljung K., López-Vidriero I., Franco-Zorrilla J.M., Solano R., Trevisan M., Pradervand S. et al., 2012. Plant Journal, 71 (5) pp. 699-711.
[URN][DOI][WoS][Pmid][serval:BIB_0DD28C80F89C]
Phytochrome Kinase Substrate 4 is phosphorylated by the phototropin 1 photoreceptor.
Demarsy E., Schepens I., Okajima K., Hersch M., Bergmann S., Christie J., Shimazaki K., Tokutomi S., Fankhauser C., 2012. EMBO Journal, 31 (16) pp. 3457-3467.
[URN][DOI][WoS][Pmid][serval:BIB_D17C87E21DB2]
Plac8 is required for white adipocyte differentiation in vitro and cell number control in vivo.
Jimenez-Preitner M., Berney X., Thorens B., 2012. PLoS One, 7 (11) pp. e48767.
[URN][DOI][WoS][Pmid][serval:BIB_EAD35B24DA6A]
Plant development: should I stop or should I grow?
Lorrain S., Fankhauser C., 2012. Current Biology, 22 (16) pp. R645-R647.
[URN][DOI][WoS][Pmid][serval:BIB_BF0986665648]
 
Positional therapy for obstructive sleep apnea: an objective measurement of patients' usage and efficacy at home.
Heinzer R.C., Pellaton C., Rey V., Rossetti A.O., Lecciso G., Haba-Rubio J., Tafti M., Lavigne G., 2012. Sleep Medicine, 13 (4) pp. 425-428. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B7E37B1C5DCA]
 
Potential Role of TRAIL in the Management of Autoimmune Diabetes Mellitus.
Bernardi S., Norcio A., Toffoli B., Zauli G., Secchiero P., 2012. Current Pharmaceutical Design, 18 (35) pp. 5759-5765.
[WoS][Pmid][serval:BIB_EAD665D92C07]
 
PPARs at the crossroads of lipid signaling and inflammation.
Wahli W., Michalik L., 2012. Trends in Endocrinology and Metabolism, 23 (7) pp. 351-363.
[DOI][WoS][Pmid][serval:BIB_EA74394CACCD]
 
PPARβ/δ affects pancreatic β cell mass and insulin secretion in mice.
Iglesias J., Barg S., Vallois D., Lahiri S., Roger C., Yessoufou A., Pradevand S., McDonald A., Bonal C., Reimann F. et al., 2012. Journal of Clinical Investigation, 122 (11) pp. 4105-4117.
[DOI][WoS][Pmid][serval:BIB_185C03FE1024]
Prevalence of diabetes increases with sleep disordered breathing severity in the general population: the HypnoLaus study
Haba-Rubio J., Andries D., Tobback N., Vaucher J., Marques-Vidal P., Vollenweider P., Waeber G., Tafti M., Heinzer R.C., 2012. pp. A293-A294 dans Sleep 2012, 26th Annual Meeting of the Associated Professional Sleep Society, Sleep.
[URN][WoS][serval:BIB_DB02D37223D0]
Probing Rad51-DNA interactions by changing DNA twist.
Atwell S., Disseau L., Stasiak A.Z., Stasiak A., Renodon-Cornière A., Takahashi M., Viovy J.L., Cappello G., 2012. Nucleic Acids Research, 40 (22) pp. 11769-11776.
[URN][DOI][WoS][Pmid][serval:BIB_F52D1167F718]
Promoter architecture of mouse olfactory receptor genes.
Plessy C., Pascarella G., Bertin N., Akalin A., Carrieri C., Vassalli A., Lazarevic D., Severin J., Vlachouli C., Simone R. et al., 2012. Genome Research, 22 (3) pp. 486-497.
[URN][DOI][WoS][Pmid][serval:BIB_24C0752E4BCB]
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.
Orchard S., Kerrien S., Abbani S., Aranda B., Bhate J., Bidwell S., Bridge A., Briganti L., Brinkman F.S., Brinkman F. et al., 2012. Nature Methods, 9 (4) pp. 345-350.
[URN][DOI][WoS][Pmid][serval:BIB_1070A4E32C28]
 
Proteomic and transcriptomic profiling of Staphylococcus aureus surface LPXTG-proteins: correlation with agr genotypes and adherence phenotypes.
Ythier M., Resch G., Waridel P., Panchaud A., Gfeller A., Majcherczyk P., Quadroni M., Moreillon P., 2012. Molecular and Cellular Proteomics, 11 (11) pp. 1123-1139. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_ED98E07ED10F]
RAE-1, a novel PHR binding protein, is required for axon termination and synapse formation in Caenorhabditis elegans.
Grill B., Chen L., Tulgren E.D., Baker S.T., Bienvenut W., Anderson M., Quadroni M., Jin Y., Garner C.C., 2012. Journal of Neuroscience, 32 (8) pp. 2628-2636.
[URN][DOI][WoS][Pmid][serval:BIB_B9594207D4D9]
Rhea-a manually curated resource of biochemical reactions.
Alcántara R., Axelsen K.B., Morgat A., Belda E., Coudert E., Bridge A., Cao H., de Matos P., Ennis M., Turner S. et al., 2012. Nucleic Acids Research, 40 (Database issue) pp. D754-D760.
[URN][DOI][WoS][Pmid][serval:BIB_E9A04015506E]
 
Saccharomyces cerevisiae Dmc1 and Rad51 Proteins Preferentially Function with Tid1 and Rad54 Proteins, Respectively, to Promote DNA Strand Invasion during Genetic Recombination.
Nimonkar A.V., Dombrowski C.C., Siino J.S., Stasiak A.Z., Stasiak A., Kowalczykowski S.C., 2012. Journal of Biological Chemistry, 287 (34) pp. 28727-28737.
[DOI][WoS][Pmid][serval:BIB_D442EA44C09F]
 
Sensing of glucose in the brain.
Thorens B., 2012. pp. 277-294 dans Joost H.G. (eds.) Appetite control, Springer-Verlag.
[DOI][Pmid][serval:BIB_2D4773FC7904]
 
Sensing the long and the short of it.
Benton R., 2012. Nature Neuroscience, 15 (4) pp. 501-503.
[DOI][WoS][Pmid][serval:BIB_18CA31D088ED]
Seventy-five genetic loci influencing the human red blood cell.
van der Harst P., Zhang W., Mateo Leach I., Rendon A., Verweij N., Sehmi J., Paul D.S., Elling U., Allayee H., Li X. et al., 2012. Nature, 492 (7429) pp. 369-375. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A33D6D054D38]
 
Sleep and EEG Phenotyping in Mice.
Mang G.M., Franken P., 2012. Current Protocols in Mouse Biology, 2 (1) pp. 55-74. Peer-reviewed.
[DOI][Pmid][serval:BIB_782201C68610]
 
Sleep and genetics
Franken P., Tafti P., 2012. pp. 43-45 dans Bassetti C.L., Knobl B., Schulz H (eds.) European Sleep Research Society, 1972-2012, European Sleep Research Society.
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Spatially and genetically distinct control of seed germination by phytochromes A and B.
Lee K.P., Piskurewicz U., Turečková V., Carat S., Chappuis R., Strnad M., Fankhauser C., Lopez-Molina L., 2012. Genes and Development, 26 (17) pp. 1984-1996.
[DOI][WoS][Pmid][serval:BIB_92203271BE9B]
 
Structural variation and its effect on expression.
Harewood L., Chaignat E., Reymond A., 2012. Methods in Molecular Biology, 838 pp. 173-186.
[DOI][WoS][Pmid][serval:BIB_D6EAA1BF22E4]
Sustaining sleep spindles through enhanced SK2-channel activity consolidates sleep and elevates arousal threshold.
Wimmer R.D., Astori S., Bond C.T., Rovó Z., Chatton J.Y., Adelman J.P., Franken P., Lüthi A., 2012. Journal of Neuroscience, 32 (40) pp. 13917-13928. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_078D7F363DB5]
Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.
Sawyer S., Krause J., Guschanski K., Savolainen V., Pääbo S., 2012. PLoS One, 7 (3) pp. e34131.
[URN][DOI][WoS][Pmid][serval:BIB_679760A9E00A]
The circadian clock modulates renal sodium handling.
Nikolaeva S., Pradervand S., Centeno G., Zavadova V., Tokonami N., Maillard M., Bonny O., Firsov D., 2012. Journal of the American Society of Nephrology, 23 (6) pp. 1019-1026. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4E9C79612EC0]
 
The death domain-containing protein Unc5CL is a novel MyD88-independent activator of the pro-inflammatory IRAK signaling cascade.
Heinz L.X., Rebsamen M., Rossi D.C., Staehli F., Schroder K., Quadroni M., Gross O., Schneider P., Tschopp J., 2012. Cell Death and Differentiation, 19 (4) pp. 722-731.
[DOI][WoS][Pmid][serval:BIB_7138FF5142AF]
The E3-Ubiquitin Ligase TRIM50 Interacts with HDAC6 and p62, and Promotes the Sequestration and Clearance of Ubiquitinated Proteins into the Aggresome.
Fusco C., Micale L., Egorov M., Monti M., D'Addetta E.V., Augello B., Cozzolino F., Calcagnì A., Fontana A., Polishchuk R.S. et al., 2012. PLoS One, 7 (7) pp. e40440.
[URN][DOI][WoS][Pmid][serval:BIB_6BC9845695E4]
The fine-scale architecture of structural variants in 17 mouse genomes.
Yalcin B., Wong K., Bhomra A., Goodson M., Keane T.M., Adams D.J., Flint J., 2012. Genome Biology, 13 (3) pp. R18.
[URN][DOI][WoS][Pmid][serval:BIB_2D73F306FA68]
The GENCODE pseudogene resource.
Pei B., Sisu C., Frankish A., Howald C., Habegger L., Mu X.J., Harte R., Balasubramanian S., Tanzer A., Diekhans M. et al., 2012. Genome Biology, 13 (9) pp. R51.
[URN][DOI][WoS][Pmid][serval:BIB_C74B18C4594F]
The Gene Ontology: enhancements for 2011.
Gene Ontology Consortium, 2012. Nucleic Acids Research, 40 (Database issue) pp. D559-D564.
[URN][DOI][WoS][Pmid][serval:BIB_883B08092FE5]
 
The hyperstimulated β-cell: prelude to diabetes?
Boitard C., Accili D., Ahrén B., Cerasi E., Seino S., Thorens B., 2012. Diabetes, Obesity and Metabolism, 14 Suppl 3 pp. iv-viii.
[DOI][WoS][Pmid][serval:BIB_B67C9A5A929C]
The nuclear hormone receptor PPARγ counteracts vascular calcification by inhibiting Wnt5a signalling in vascular smooth muscle cells.
Woldt E., Terrand J., Mlih M., Matz R.L., Bruban V., Coudane F., Foppolo S., El Asmar Z., Chollet M.E., Ninio E. et al., 2012. Nature Communications, 3 (1077) pp. 1-10. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E427ADEC633E]
 
The peroxisome proliferator-activated receptor (PPAR) β/δ agonist GW501516 inhibits IL-6-induced signal transducer and activator of transcription 3 (STAT3) activation and insulin resistance in human liver cells.
Serrano-Marco L., Barroso E., El Kochairi I., Palomer X., Michalik L., Wahli W., Vázquez-Carrera M., 2012. Diabetologia, 55 (3) pp. 743-751.
[DOI][WoS][Pmid][serval:BIB_E76280237723]
The UniProt-GO Annotation database in 2011.
Dimmer E.C., Huntley R.P., Alam-Faruque Y., Sawford T., O'Donovan C., Martin M.J., Bely B., Browne P., Mun Chan W., Eberhardt R. et al., 2012. Nucleic Acids Research, 40 (Database issue) pp. D565-D570.
[URN][DOI][WoS][Pmid][serval:BIB_98BC9474447E]
 
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data.
Jungo F., Bougueleret L., Xenarios I., Poux S., 2012. Toxicon, 60 (4) pp. 551-557.
[DOI][WoS][Pmid][serval:BIB_2F98F7136CEF]
 
Toward interoperable bioscience data.
Sansone S.A., Rocca-Serra P., Field D., Maguire E., Taylor C., Hofmann O., Fang H., Neumann S., Tong W., Amaral-Zettler L. et al., 2012. Nature Genetics, 44 (2) pp. 121-126.
[DOI][WoS][Pmid][serval:BIB_02858EC965DD]
UniPathway: a resource for the exploration and annotation of metabolic pathways.
Morgat A., Coissac E., Coudert E., Axelsen K.B., Keller G., Bairoch A., Bridge A., Bougueleret L., Xenarios I., Viari A., 2012. Nucleic Acids Research, 40 (Database issue) pp. D761-D769.
[URN][DOI][WoS][Pmid][serval:BIB_FC8A2825CAF8]
UniProtKB amid the turmoil of plant proteomics research.
Schneider M., Consortium Consortium, Poux S., 2012. Frontiers in Plant Science, 3 p. 270.
[URN][DOI][WoS][Pmid][serval:BIB_72AF5AF5D6EA]
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